mRNA_H-paniculata_contig9165.16979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9165.16979.1
Unique NamemRNA_H-paniculata_contig9165.16979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0F766_9PHAE (Ribosomal protein L24 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F766_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.090e-38
Identity = 68/83 (81.93%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KKVT KK + IKVGEKVKIISGNDKGKEGL+ K  KSTNQIIVEG+NIKVKH K QR GETGEIKR EFPIH SNILRYKE
Sbjct:    1 MKKKVTFKKRINIKVGEKVKIISGNDKGKEGLITKICKSTNQIIVEGVNIKVKHHKPQRPGETGEIKRAEFPIHCSNILRYKE 83
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BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0FAR6_9PHAE (Ribosomal protein L24 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAR6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.940e-29
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KK  L + + +++GEKVK+ISG DKGK GLV K  K  N++IVEGINIKVKH K+ RSG+TGEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKTPLIRKIHVRIGEKVKVISGQDKGKVGLVTKIVKQQNKLIVEGINIKVKHIKANRSGQTGEIKRIEFPIHSSNVSHYEE 83
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BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: D1J741_ECTSI (50S ribosomal protein L24, chloroplastic n=5 Tax=Ectocarpales TaxID=2877 RepID=D1J741_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.200e-28
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KKVTLK    +K+GEKVKIISG DKGK GLVKK  K  N++IVEGINI VKH K  R G+ GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKVTLKLKGHVKIGEKVKIISGKDKGKTGLVKKILKQKNRLIVEGINIGVKHIKPTRPGQNGEIKRIEFPIHSSNVSLYQE 83
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BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A0S0FBF3_COSCS (50S ribosomal protein L24 n=24 Tax=Laminariales TaxID=2886 RepID=A0A0S0FBF3_COSCS)

HSP 1 Score: 104 bits (260), Expect = 9.840e-28
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KK TLK  + +K+GEKVKIISG +KGK GLVKK  K  N++I+EGINI++KH K  R  E GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKATLKMKVHVKIGEKVKIISGQEKGKVGLVKKIIKQENKLIIEGINIRIKHVKPTRPEENGEIKRIEFPIHSSNVSLYQE 83
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BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A2R4QQ49_9PHAE (50S ribosomal protein L24 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ49_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.990e-27
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KK  +KK L +K+GEKVKIISG  KGK GLVKK  K  N++I+EGINIK+KH K+ R GE GEIKR+EFPI  SN+  Y E
Sbjct:    1 MKKKTKIKKKLHVKIGEKVKIISGYQKGKVGLVKKIIKQKNKLIIEGINIKIKHIKASRPGEDGEIKRMEFPIDSSNVSSYNE 83
[Close]
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A2I4Q2I2_9PHAE (50S ribosomal protein L24, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I2_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.940e-26
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   37 IKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            IK+GEKVK+ISG +KGK GL+KK  ++ +++IVEGINI+ KHSKS R G+ GEIKRIEFPIH SN+ +YKE
Sbjct:   15 IKLGEKVKVISGQEKGKIGLIKKIIRAKSKVIVEGINIRFKHSKSTRPGQVGEIKRIEFPIHSSNVSKYKE 85
[Close]
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0F9N2_9PHAE (Ribosomal protein L24 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9N2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.960e-26
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KK+ L+  + IK+GEKVKIISG +KGK GLVK+  K  N++IVEG+NIKVKH K  R  + GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKMKLQIKVNIKLGEKVKIISGREKGKVGLVKEIIKKKNKLIVEGVNIKVKHLKPTRPEQNGEIKRIEFPIHSSNVSLYQE 83
[Close]
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A141BSN0_9PHAE (50S ribosomal protein L24, chloroplastic n=12 Tax=Sargassum TaxID=3015 RepID=A0A141BSN0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-25
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    7 KKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            KK  LK+ + IK+GE VK+ISG +KGK GLVKK  +S N++I++GINI+ KH KS R GE GEIKRIEFPI  SN+  YKE
Sbjct:    2 KKTKLKRKVHIKIGETVKVISGQEKGKIGLVKKIVRSKNKLIIQGINIRTKHIKSNRPGEDGEIKRIEFPIDSSNVSSYKE 82
[Close]
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8F0F7Z5_9PHAE (Ribosomal protein L24 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Z5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.700e-25
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KKV+L   + +K+GEKV +ISG +KGK GLVKK  K  N++I+EGINI+VKH K  R  + GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKVSLPIKVHVKIGEKVTVISGKEKGKVGLVKKILKQQNKLIIEGINIRVKHVKPSRPEQNGEIKRIEFPIHSSNVSLYQE 83
[Close]
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Match: A0A8B0R7D8_SCYLO (50S ribosomal protein L24, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A8B0R7D8_SCYLO)

HSP 1 Score: 97.4 bits (241), Expect = 7.730e-25
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINIKVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE 249
            M+KK  L+    +K+GEKV IISG +KGK GLVKK  K  N++I+EGINI VKH K  R G+ GEIKRIEFPIH SN+  Y+E
Sbjct:    1 MKKKAALQLKAHVKIGEKVIIISGREKGKIGLVKKILKQKNRLIIEGINIGVKHIKPTRPGQNGEIKRIEFPIHSSNVSLYQE 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9165.16979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F766_9PHAE2.090e-3881.93Ribosomal protein L24 n=1 Tax=Protohalopteris sp. ... [more]
A0A8F0FAR6_9PHAE5.940e-2963.86Ribosomal protein L24 n=1 Tax=Desmarestia aculeata... [more]
D1J741_ECTSI1.200e-2867.4750S ribosomal protein L24, chloroplastic n=5 Tax=E... [more]
A0A0S0FBF3_COSCS9.840e-2862.6550S ribosomal protein L24 n=24 Tax=Laminariales Ta... [more]
A0A2R4QQ49_9PHAE1.990e-2762.6550S ribosomal protein L24 n=3 Tax=Fucaceae TaxID=3... [more]
A0A2I4Q2I2_9PHAE4.940e-2666.2050S ribosomal protein L24, chloroplastic n=1 Tax=D... [more]
A0A8F0F9N2_9PHAE9.960e-2661.45Ribosomal protein L24 n=1 Tax=Chorda asiatica TaxI... [more]
A0A141BSN0_9PHAE1.300e-2561.7350S ribosomal protein L24, chloroplastic n=12 Tax=... [more]
A0A8F0F7Z5_9PHAE2.700e-2559.04Ribosomal protein L24 n=2 Tax=Laminariales TaxID=2... [more]
A0A8B0R7D8_SCYLO7.730e-2560.2450S ribosomal protein L24, chloroplastic n=3 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9165contigH-paniculata_contig9165:1469..1720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.2e-21
Seed eggNOG ortholog2880.D1J741
Preferred namerpl24
KEGG koko:K02895
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022625,GO:0022626,GO:0031967,GO:0031975,GO:0032544,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0198@1,KOG1708@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.8037279-CDS-H-paniculata_contig9165:1468..17201622931141.8037279-CDS-H-paniculata_contig9165:1468..1720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9165 1469..1720 +
1691481609.5503557-CDS-H-paniculata_contig9165:1468..17201691481609.5503557-CDS-H-paniculata_contig9165:1468..1720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9165 1469..1720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9165.16979.1prot_H-paniculata_contig9165.16979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9165 1469..1720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9165.16979.1

>prot_H-paniculata_contig9165.16979.1 ID=prot_H-paniculata_contig9165.16979.1|Name=mRNA_H-paniculata_contig9165.16979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MRKKVTLKKILTIKVGEKVKIISGNDKGKEGLVKKTFKSTNQIIVEGINI
KVKHSKSQRSGETGEIKRIEFPIHRSNILRYKE*
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mRNA from alignment at H-paniculata_contig9165:1469..1720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9165.16979.1 ID=mRNA_H-paniculata_contig9165.16979.1|Name=mRNA_H-paniculata_contig9165.16979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig9165:1469..1720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAAAAAGGTTACTTTAAAAAAAATATTAACTATAAAAGTTGGTGA
AAAAGTGAAAATCATTTCTGGAAATGATAAAGGAAAAGAAGGACTGGTTA
AGAAAACATTTAAATCCACAAATCAAATTATTGTTGAAGGAATTAATATA
AAAGTTAAACATAGTAAATCTCAGCGCTCCGGTGAAACTGGGGAAATTAA
AAGAATAGAATTTCCAATTCATCGTTCTAATATCTTACGTTACAAGGAGT
AA
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Coding sequence (CDS) from alignment at H-paniculata_contig9165:1469..1720+

>mRNA_H-paniculata_contig9165.16979.1 ID=mRNA_H-paniculata_contig9165.16979.1|Name=mRNA_H-paniculata_contig9165.16979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig9165:1469..1720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAAAAAGGTTACTTTAAAAAAAATATTAACTATAAAAGTTGGTGA
AAAAGTGAAAATCATTTCTGGAAATGATAAAGGAAAAGAAGGACTGGTTA
AGAAAACATTTAAATCCACAAATCAAATTATTGTTGAAGGAATTAATATA
AAAGTTAAACATAGTAAATCTCAGCGCTCCGGTGAAACTGGGGAAATTAA
AAGAATAGAATTTCCAATTCATCGTTCTAATATCTTACGTTACAAGGAGT
AAATGAGAAAAAAGGTTACTTTAAAAAAAATATTAACTATAAAAGTTGGT
GAAAAAGTGAAAATCATTTCTGGAAATGATAAAGGAAAAGAAGGACTGGT
TAAGAAAACATTTAAATCCACAAATCAAATTATTGTTGAAGGAATTAATA
TAAAAGTTAAACATAGTAAATCTCAGCGCTCCGGTGAAACTGGGGAAATT
AAAAGAATAGAATTTCCAATTCATCGTTCTAATATCTTACGTTACAAGGA
GTAA
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