mRNA_H-paniculata_contig9097.16929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A6H5JUP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP4_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.000e-9 Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 7 PLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVETVRRDV 150
PLP GWEMQ T+QG YYVDH+ K+T W+ P +S+ ++V+ + R D+
Sbjct: 840 PLPEGWEMQTTDQGIPYYVDHMNKRTSWDPPMMSSGGMSVIASERPDI 887
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: D7G818_ECTSI (Ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G818_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 1.780e-8 Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 7 PLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVETVRRDV 150
PLP GWEMQ T+QG YYVDH+ K+T W+ P +S+ ++V+ + D+
Sbjct: 885 PLPEGWEMQTTDQGIPYYVDHLNKRTSWDPPMMSSGGMSVIASELPDI 932
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A8C0YTT2_CYPCA (E3 ubiquitin-protein ligase Itchy-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C0YTT2_CYPCA) HSP 1 Score: 54.3 bits (129), Expect = 4.030e-7 Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query: 4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
CPLP GWE + + G +YYVDHV+K+T WE P
Sbjct: 291 CPLPPGWEQRVDQNGRVYYVDHVEKRTAWERP 322
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A672NLY7_SINGR (HECT-type E3 ubiquitin transferase n=2 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NLY7_SINGR) HSP 1 Score: 54.3 bits (129), Expect = 4.050e-7 Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query: 4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
CPLP GWE + + G +YYVDHV+K+T WE P
Sbjct: 95 CPLPSGWEQRVDQNGRVYYVDHVEKRTAWERP 126
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A672NPV9_SINGR (E3 ubiquitin-protein ligase n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NPV9_SINGR) HSP 1 Score: 54.3 bits (129), Expect = 4.060e-7 Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query: 4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
CPLP GWE + + G +YYVDHV+K+T WE P
Sbjct: 197 CPLPSGWEQRVDQNGRVYYVDHVEKRTAWERP 228
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A672NMH6_SINGR (E3 ubiquitin-protein ligase n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NMH6_SINGR) HSP 1 Score: 54.3 bits (129), Expect = 4.060e-7 Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query: 4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
CPLP GWE + + G +YYVDHV+K+T WE P
Sbjct: 291 CPLPSGWEQRVDQNGRVYYVDHVEKRTAWERP 322
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: UPI001C56E35A (E3 ubiquitin-protein ligase Itchy n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C56E35A) HSP 1 Score: 54.3 bits (129), Expect = 4.070e-7 Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query: 4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
CPLP GWE + + G +YYVDHV+K+T WE P
Sbjct: 291 CPLPPGWEQRVDQNGRVYYVDHVEKRTAWERP 322
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: UPI000595EEE6 (transcriptional coactivator YAP1-A isoform X1 n=7 Tax=Solenopsis invicta TaxID=13686 RepID=UPI000595EEE6) HSP 1 Score: 53.9 bits (128), Expect = 5.530e-7 Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 1 LCPLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNV 126
L PLP GWE +T++G IY+++HV + T WE+PR +A NV
Sbjct: 222 LGPLPTGWEQARTQEGQIYFLNHVTRTTTWEDPRKTAAAANV 263
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A5A9NVH7_9TELE (Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NVH7_9TELE) HSP 1 Score: 53.9 bits (128), Expect = 5.580e-7 Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1
Query: 10 LPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVET 135
LP WEM TE G IY++DHV +KT +ENP + AR N +ET
Sbjct: 127 LPDNWEMAYTENGEIYFIDHVNRKTQYENPLLEARRKNQLET 168
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A819Z1C7_9BILA (Hypothetical protein n=6 Tax=Rotaria socialis TaxID=392032 RepID=A0A819Z1C7_9BILA) HSP 1 Score: 53.1 bits (126), Expect = 1.020e-6 Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 1
Query: 7 PLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARD 117
PLP W+++ G YY+DHV K+T W+NPR+ +RD
Sbjct: 314 PLPTPWDVRTAPSGRCYYIDHVNKRTTWQNPRVISRD 350 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9097.16929.1 >prot_H-paniculata_contig9097.16929.1 ID=prot_H-paniculata_contig9097.16929.1|Name=mRNA_H-paniculata_contig9097.16929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp MQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVETVRRDVRECTLback to top mRNA from alignment at H-paniculata_contig9097:267..431+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9097.16929.1 ID=mRNA_H-paniculata_contig9097.16929.1|Name=mRNA_H-paniculata_contig9097.16929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig9097:267..431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9097:267..431+ >mRNA_H-paniculata_contig9097.16929.1 ID=mRNA_H-paniculata_contig9097.16929.1|Name=mRNA_H-paniculata_contig9097.16929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig9097:267..431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |