mRNA_H-paniculata_contig9097.16929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9097.16929.1
Unique NamemRNA_H-paniculata_contig9097.16929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A6H5JUP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.000e-9
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    7 PLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVETVRRDV 150
            PLP GWEMQ T+QG  YYVDH+ K+T W+ P +S+  ++V+ + R D+
Sbjct:  840 PLPEGWEMQTTDQGIPYYVDHMNKRTSWDPPMMSSGGMSVIASERPDI 887          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: D7G818_ECTSI (Ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G818_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-8
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    7 PLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVETVRRDV 150
            PLP GWEMQ T+QG  YYVDH+ K+T W+ P +S+  ++V+ +   D+
Sbjct:  885 PLPEGWEMQTTDQGIPYYVDHLNKRTSWDPPMMSSGGMSVIASELPDI 932          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A8C0YTT2_CYPCA (E3 ubiquitin-protein ligase Itchy-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C0YTT2_CYPCA)

HSP 1 Score: 54.3 bits (129), Expect = 4.030e-7
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
            CPLP GWE +  + G +YYVDHV+K+T WE P
Sbjct:  291 CPLPPGWEQRVDQNGRVYYVDHVEKRTAWERP 322          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A672NLY7_SINGR (HECT-type E3 ubiquitin transferase n=2 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NLY7_SINGR)

HSP 1 Score: 54.3 bits (129), Expect = 4.050e-7
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
            CPLP GWE +  + G +YYVDHV+K+T WE P
Sbjct:   95 CPLPSGWEQRVDQNGRVYYVDHVEKRTAWERP 126          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A672NPV9_SINGR (E3 ubiquitin-protein ligase n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NPV9_SINGR)

HSP 1 Score: 54.3 bits (129), Expect = 4.060e-7
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
            CPLP GWE +  + G +YYVDHV+K+T WE P
Sbjct:  197 CPLPSGWEQRVDQNGRVYYVDHVEKRTAWERP 228          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A672NMH6_SINGR (E3 ubiquitin-protein ligase n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NMH6_SINGR)

HSP 1 Score: 54.3 bits (129), Expect = 4.060e-7
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
            CPLP GWE +  + G +YYVDHV+K+T WE P
Sbjct:  291 CPLPSGWEQRVDQNGRVYYVDHVEKRTAWERP 322          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: UPI001C56E35A (E3 ubiquitin-protein ligase Itchy n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C56E35A)

HSP 1 Score: 54.3 bits (129), Expect = 4.070e-7
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:    4 CPLPVGWEMQKTEQGTIYYVDHVKKKTVWENP 99
            CPLP GWE +  + G +YYVDHV+K+T WE P
Sbjct:  291 CPLPPGWEQRVDQNGRVYYVDHVEKRTAWERP 322          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: UPI000595EEE6 (transcriptional coactivator YAP1-A isoform X1 n=7 Tax=Solenopsis invicta TaxID=13686 RepID=UPI000595EEE6)

HSP 1 Score: 53.9 bits (128), Expect = 5.530e-7
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 LCPLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNV 126
            L PLP GWE  +T++G IY+++HV + T WE+PR +A   NV
Sbjct:  222 LGPLPTGWEQARTQEGQIYFLNHVTRTTTWEDPRKTAAAANV 263          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A5A9NVH7_9TELE (Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NVH7_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 5.580e-7
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1
Query:   10 LPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVET 135
            LP  WEM  TE G IY++DHV +KT +ENP + AR  N +ET
Sbjct:  127 LPDNWEMAYTENGEIYFIDHVNRKTQYENPLLEARRKNQLET 168          
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Match: A0A819Z1C7_9BILA (Hypothetical protein n=6 Tax=Rotaria socialis TaxID=392032 RepID=A0A819Z1C7_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 1.020e-6
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 1
Query:    7 PLPVGWEMQKTEQGTIYYVDHVKKKTVWENPRISARD 117
            PLP  W+++    G  YY+DHV K+T W+NPR+ +RD
Sbjct:  314 PLPTPWDVRTAPSGRCYYIDHVNKRTTWQNPRVISRD 350          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9097.16929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUP4_9PHAE2.000e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G818_ECTSI1.780e-847.92Ubiquitin-protein ligase n=1 Tax=Ectocarpus silicu... [more]
A0A8C0YTT2_CYPCA4.030e-759.38E3 ubiquitin-protein ligase Itchy-like n=1 Tax=Cyp... [more]
A0A672NLY7_SINGR4.050e-759.38HECT-type E3 ubiquitin transferase n=2 Tax=Sinocyc... [more]
A0A672NPV9_SINGR4.060e-759.38E3 ubiquitin-protein ligase n=1 Tax=Sinocyclocheil... [more]
A0A672NMH6_SINGR4.060e-759.38E3 ubiquitin-protein ligase n=1 Tax=Sinocyclocheil... [more]
UPI001C56E35A4.070e-759.38E3 ubiquitin-protein ligase Itchy n=1 Tax=Cyprinus... [more]
UPI000595EEE65.530e-750.00transcriptional coactivator YAP1-A isoform X1 n=7 ... [more]
A0A5A9NVH7_9TELE5.580e-754.76Membrane-associated guanylate kinase, WW and PDZ d... [more]
A0A819Z1C7_9BILA1.020e-648.65Hypothetical protein n=6 Tax=Rotaria socialis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9097contigH-paniculata_contig9097:267..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size138
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.2952423-UTR-H-paniculata_contig9097:266..2931622931134.2952423-UTR-H-paniculata_contig9097:266..293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9097 267..293 +
1691481605.9226918-UTR-H-paniculata_contig9097:266..2931691481605.9226918-UTR-H-paniculata_contig9097:266..293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9097 267..293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.3110561-CDS-H-paniculata_contig9097:293..4311622931134.3110561-CDS-H-paniculata_contig9097:293..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9097 294..431 +
1691481605.935905-CDS-H-paniculata_contig9097:293..4311691481605.935905-CDS-H-paniculata_contig9097:293..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9097 294..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9097.16929.1prot_H-paniculata_contig9097.16929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9097 294..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9097.16929.1

>prot_H-paniculata_contig9097.16929.1 ID=prot_H-paniculata_contig9097.16929.1|Name=mRNA_H-paniculata_contig9097.16929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MQKTEQGTIYYVDHVKKKTVWENPRISARDLNVVETVRRDVRECTL
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mRNA from alignment at H-paniculata_contig9097:267..431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9097.16929.1 ID=mRNA_H-paniculata_contig9097.16929.1|Name=mRNA_H-paniculata_contig9097.16929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig9097:267..431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTGCCCGCTGCCGGTAGGGTGGGAGATGCAGAAGACAGAGCAGGGCAC TATTTATTACGTGGACCATGTCAAGAAGAAAACGGTGTGGGAAAACCCTC GGATCTCTGCGCGTGACTTGAACGTCGTGGAGACGGTTCGGCGAGATGTC CGTGAGTGCACTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig9097:267..431+

>mRNA_H-paniculata_contig9097.16929.1 ID=mRNA_H-paniculata_contig9097.16929.1|Name=mRNA_H-paniculata_contig9097.16929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig9097:267..431+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAAGACAGAGCAGGGCACTATTTATTACGTGGACCATGTCAAGAA
GAAAACGGTGTGGGAAAACCCTCGGATCTCTGCGCGTGACTTGAACGTCG
TGGAGACGGTTCGGCGAGATGTCCGTGAGTGCACTCTTATGCAGAAGACA
GAGCAGGGCACTATTTATTACGTGGACCATGTCAAGAAGAAAACGGTGTG
GGAAAACCCTCGGATCTCTGCGCGTGACTTGAACGTCGTGGAGACGGTTC
GGCGAGATGTCCGTGAGTGCACTCTT
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