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Homology
BLAST of mRNA_H-paniculata_contig127.1692.1 vs. uniprot
Match: D7FJN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN7_ECTSI) HSP 1 Score: 276 bits (705), Expect = 6.010e-91 Identity = 129/221 (58.37%), Postives = 155/221 (70.14%), Query Frame = 1
Query: 16 LLTLVALALATNVLVGPSLRWRPMFVSGALAAIVVFEYYYIFFAVMKLPRDWVQRTGVEIQRLDCRRSTKGGKNAQDLVSKSSLNPCFCPSDGYCYNLSTERWVSPSLCPTDYTAWCFDSNLTYVHLYISDDRDCKAGQGAQCTKDEPCTPCDLESIQGFLNAG---------VPGASRCRQCGAGNRGACNFVIDEGPYCKKYPWSMEVVPCTVCCTEPE 651
LLTLVALAL+ NV+VGPS+RWRP+FVSG L AIV+ EYYY+FFA++K+P DW R G I+R DC +STKGGK A S +NPCFCP +C NL++ WV PS+CP D TA C+D N T V+LYI RDC A QG C+ PCTPC L++++G++ A G SRCR CGAGN GACNFVI EGPYC K P S EV PC+VCCTEPE
Sbjct: 15 LLTLVALALSANVIVGPSVRWRPVFVSGLLVAIVICEYYYLFFAIVKVPTDWASRRGASIERWDCLQSTKGGKRADSSGSSFDINPCFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVNLYIKSTRDCTAAQGPSCSLAAPCTPCGLDTLEGYIKASGGDANSNNATDGVSRCRSCGAGNSGACNFVIGEGPYCWKEPGSREVEPCSVCCTEPE 235
BLAST of mRNA_H-paniculata_contig127.1692.1 vs. uniprot
Match: A0A7S2CU36_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU36_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.100e-30 Identity = 85/250 (34.00%), Postives = 117/250 (46.80%), Query Frame = 1
Query: 10 FQLLTLVALALATNVLVGPSLRWRPMFVSGALAAIVVFEYYYIFFAVMK-LPRDWVQRTGVEIQRLDCRRSTKGGKNAQDLV---SKSSLNPCFCPSDGYC-YNLSTERWVS--PSLCPTDYTAWCFDS-----------------NLTYVHLYISDD-------RDCKAGQGAQCTKDEPCTPCDLESIQGFLNAGVPGASRCRQCGAGNRGACNFVIDEGPYCKKYP------WSMEVVPCTVCCTEP 648
F + LV L ++ + G +WR F L +VV +YY +F M+ P D GVE R DC +STKGGK ++ + S+ +LNPC+C ++ C Y + + P CP C + V YI+ + RDCK GQ A+CT+ +PC+PC+LE + F G +RC C N G CNFV GPYC + P S +VVPC CCTEP
Sbjct: 131 FMMYVLVCLV-SSRYMNGVGSKWRSNFSGSLLLGMVVIQYYSVFMTAMQNYPYD-----GVEAYRWDCLQSTKGGKISRAMFYEGSERALNPCYCHANATCKYKSGVKEYNGSHPLGCPLTDEFTCLEQYAFQAFKTETXXXXXXXXXXKVWPYIAREALDEGFRRDCKKGQAARCTRQDPCSPCELEKVLAF------GVTRCETCSVFNNGDCNFVPGVGPYCWESPDYDERGGSRKVVPCKQCCTEP 368
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 277.3 |
| Seed ortholog evalue | 6e-72 |
| Seed eggNOG ortholog | 2880.D7FJN7 |
| Hectar predicted targeting category | signal peptide |
| EggNOG OGs | 2CAJ7@1,2STMA@2759 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-09_000510.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 651 |
| Cds size | 651 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig127.1692.1 >prot_H-paniculata_contig127.1692.1 ID=prot_H-paniculata_contig127.1692.1|Name=mRNA_H-paniculata_contig127.1692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
CLCFQLLTLVALALATNVLVGPSLRWRPMFVSGALAAIVVFEYYYIFFAV
MKLPRDWVQRTGVEIQRLDCRRSTKGGKNAQDLVSKSSLNPCFCPSDGYC
YNLSTERWVSPSLCPTDYTAWCFDSNLTYVHLYISDDRDCKAGQGAQCTK
DEPCTPCDLESIQGFLNAGVPGASRCRQCGAGNRGACNFVIDEGPYCKKY
PWSMEVVPCTVCCTEPE back to topmRNA from alignment at H-paniculata_contig127:36539..40730- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig127.1692.1 ID=mRNA_H-paniculata_contig127.1692.1|Name=mRNA_H-paniculata_contig127.1692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4192bp|location=Sequence derived from alignment at H-paniculata_contig127:36539..40730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCTCTGTTTTCAGCTACTCACACTGGTGGCTCTAGCATTGGCGACGAA
TGTGCTCGTTGGCCCATCGCTGCGGTGGAGGCCCATGTTCGTATCTGGCG
CTCTCGCTGCCATCGTTGTATTCGAGGTTAGCACTCTACAACAGCGCTAG
CACTTGGTAACAGATATTGGGTTGTCCCTCAAACAACAGCCCACGGTGTA
GCAGAGCATCCTTGTACTAAGATGTTGTTTTTTGTGAAGAAGGAAAGTAA
GCTTTGCGAAATGCTCACAACTTGTAGAGTCCACACAATCTCTGTCCAAA
TCTGTAGTTCATTAGCTAGTCTGCTAATAGTCTTCCTACAAAAGCGGTTG
CTGCTGTAGCTGGTTTATTATGTCAATAGATGCCCTTCTGACGACGAAAA
CCGATATGGCTAATACTGAGCATGGACGCGAACAAGATGCTCCCTGCAGA
ACACCCGGATACTTCGTGTGCTAGAAGTAACGCCATTGGGCCAAGTACAC
CATGCGGATATGCTAGAAGAAGGAAGATTGACATACTAGTACTGACGCTT
GGTATCTCATGTTGACTTTGTCGGTGTCGACCCGGTTGCCCTGTGTCGTG
AACTGTGTGGGGTGTATCAACTTTAACACTTGGTGTTTTGCAAAGGACGG
CCAGGAACTACAGTCTCCCAGTGATCGGCCCCTATCATGTTGCATTGTCA
TAATGCATACACCCCTGTCTCCCACCTGATGGGTTTAACGATTTTATCAG
ATCATACGAGCACAACCATTCTAAACCCATGTCCTGCGACTGGAACGATT
ATTGCTCGTGTCCACAATTGTACTACAGGGGATGATACCTACCGCACGTC
CACCAAGATGATGTCGCTGATTTTCTCAAAATTAGGTTGCGACAAGCCGC
CTTACCTCGTCACTTTGGACAACTTGGTCCTTGTCAACGCTCGCCTGTTT
TTCCCGTCCTCACTCCAGTACTACTACATATTTTTCGCTGTGATGAAGCT
ACCACGAGATTGGGTGCAAAGAACGGTAAGCAAGCCACTTTGACGCCGCG
TTAGCATCAACAGTATTGTAAATCCCACATCGAGATATGTGAATGCAAGA
AGAGATGAAGAATCGAGGCGGAAACGAAAGTATCGTGTTCACGAGTTATT
TGACCTCCAACGATGTCGTTGGTCAGACATCGGTACTGGAGAGAAGCCGT
GATTTCTATATTTTCTGTTACGGTAATGCACCGATGTCCAACTCTTTTAT
GGTGACTTACAGGCAGTAGAAGACGTTTTTGGGAGCTTACTCAGATCACA
ATGCTGTAAAGCCATGTTGTTGTCGAATCGGATGACACCTGGGGGTTATC
AAAAGTTACGTCAAGTCACCCACGCACTAAGTCGAGCTAACGTATTCCTG
TATACTGTGATGAAGTCTATAAACAGATGATTTTTCCCTTGGCGCGCCAC
TCGACCACATTGACTTGGGGTTCTTATTCATCGTTAGAAGCGATGTATAC
TTGATTGATGTATACGAACTCTTCCGTGGTATGCATCCCGAGTGAATGAT
CGGTACACTATTGGTAAGGGGATAACACCACTCCGTTCCGTGTCTGGTCA
AATGAGAGTTTAAAGTTTTCCTGCAGGAGATAGGATAATGTATAGACAGC
ATGTGATCAGTTGTCTACACTGCAAGGGGCTCCGGCAGAGTTGCTGCTAT
TACTGTGACCTTCGTATCACTAAGCTAATAGGTTCCTGCGCGCTGCAAGG
CTGTACCCCACGAGAGTGTAGTATGAAAATCGAAGCATAGCACTATTCAG
TCAACGTCTGACAGAATCAGATCTTCAAGTTAACCTGCAAGTATCGCCTA
ACCGTTTTGGGGCTCACCCATGGGATAAGAGCACTGGCTGGCACATGGTC
CATTTTTTCCAGCGTAAGGGGGTGAAGGTGTCTTTAGGGAGCGTATTTTA
GCGAACAGTCTATGATTAATCGCTTCATATATGAAGTTGAAAACGTGCGA
CGAGCAAATCGTTTCGATATTGTTGGTGAATTAAAATTACCACGTCTCGC
TAAAAACGTTGATTGGTTACTAGAGTGAGACTTCTTTTCTTGTGTGCATG
GGTTGTACAATACGGTCATAAGGATATTCTTATTGCCAACGTGAGCCTTG
GTTTTCGTTTTCCCTATTATCATGCAGGGTGTTGAAATTCAAAGACTAGA
CTGTCGACGGAGCACCAAAGGTGGAAAAAACGCGCAAGACCTAGTCAGTA
AGTCCAGCCTTAACCCATGCTTCTGCCCCAGCGACGGCTACTGCTACAAT
CTAAGTACAGGTGAGCAGACGCTCTAATACTGACAGGGAAAAATCGCTCG
TTTTGCCACGTAACATAAATATCAGGTGGCACAGTTTAGCTAGCGTCTGA
TATGATTATCAGAATAGCAGCTACGCGTGCAAGCAGTATCTACCTACCCA
ATTGTATCGGCTTGGAAAGCCCTCGCCGTTTTCCCGTGTCTTCAGCAATA
CCGCAGGTTGTCCACTCAATATTCCTATCCCACCATCGGTACACTCATTG
CGTCATAGAAACAGTACAAGTGACTCCTTGTTTACATCAAGTCACGCCTT
GACAACGAGGGTATCCAATAACATGGAGCTTGACCGCCAATGGAAAAATA
TTACTTTGCTACCCTCCCACCCCACCACCCCACCGCTCCCATCGTAACGC
TGTTTCTCTTATGTTAAACTCCTTGATTTCTCGTAGAACGATGGGTTTCT
CCCAGCTTGTGCCCTACCGATTACACCGCGTGGTGCTTCGACAGCAACTT
GACTTATGTGAGATGTGTCTTACAAGCAAGGTACCGTGGGCTGTGTGGCA
GTTGAAACCGTCAAACTACTCAAGAATTAGAGAATGACGGGGAAGCGACA
ATAGTGAATCGAGTGCGTTTATTTTCTGGGAGGAGGGGGGCATCGTACGC
TGTGATCAGGACCGACATAGCTGGATGCACGCCGTTTTCTTTGTACCCAA
GCATATTTTATCATCTAAAGGAATTCGGCCTATATCTGATAGGTAAAAAG
CCCCGCCCAGAATGTGGATAGCACAGGGATATATACTCCGAAGCACTTGA
AAAAAATTCCAATTTGGCGTGCAGCCAAGGGTAATAAAATTTACAGCAAA
CAAGATACTGGTCTGGCCACCACGCGTAGAACAGGGGTAAAGAAGAGATA
CAAAGAGCTCTCCGAAAGATAAAGGGAGAAAAGGACTTCGTTACCTGATC
CGCTGTCGTTGTCACGCATGTTGTTCGTGTAACTATAGGTACATTTATAC
ATTTCAGATGACCGAGACTGCAAAGCTGGCCAGGGAGCACAGTGCACAAA
AGACGAACCGTGTACACCTTGCGATCTGGAGAGTATCCAGGTACATTCCC
TGGATTTACCTTGATCCTTTCTGACGGGTAGTGTACAAATAATGCCGCTG
ATAAATTGAAAAGTGTGGCGCATGACGTTTCTTTGGGGAGCTACAACGAC
CGTCCTCGGAGGTTTTGAAACCTCTACGATCATTTGGACGAATGAGTGAG
ACGTTGTAATTCGCACGAGTCTTTGTGTTGGAATGGCTGTAGAGTCGCAC
GCAACACGTGTCATATTCGAAAGCCATTCTTGGTTCTCACCCTGTCATAC
TATTGCCTCGTGACGTTCGATTTTTCCCCGACCACGCACAGTCGATCCAT
ACCAAATCCAAGCATGCTGAAACAGAAGGCCATGACTATCCCCATGAATG
CGCTGACATGAATAAATAAGCGCGCATGTTGACATCTCTCTTAAAATAAA
TCTCGTCCGAAGCTTGTCTTTCGTTTATCGTGAAACGCGTAGCACTCCAT
CCTCTTTAACTGTTTGACCCCTCACGTATTGCGGAGGTAACTTCTGGATG
CATCCTGTTGTTTCCCGCTGTGCGCTAAGCGTGCTTTTTCAACGCGAGAG
CGCTACCCCTATCCGCTCTCACCGTGTCATTTCTTTCAAACATCTCGTTA
TACGGACGTATCCTCCCTCTTCATGTGAAGGGATTTCTGAACGCTGGTGT
ACCTGGGGCGTCTCGATGTCGACAGTGCGGGGCCGGGAACCGGGGCGCAT
GTAACTTTGTCATTGATGAGGGCCCCTACTGCAAAAAATATCCATGGTCA
ATGGAAGTCGTACCATGCACCGTCTGCTGCACCGAACCAGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig127:36539..40730- >mRNA_H-paniculata_contig127.1692.1 ID=mRNA_H-paniculata_contig127.1692.1|Name=mRNA_H-paniculata_contig127.1692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig127:36539..40730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCTCTGTTTTCAGCTACTCACACTGGTGGCTCTAGCATTGGCGACGAA
TGTGCTCGTTGGCCCATCGCTGCGGTGGAGGCCCATGTTCGTATCTGGCG
CTCTCGCTGCCATCGTTGTATTCGAGTGCCTCTGTTTTCAGCTACTCACA
CTGGTGGCTCTAGCATTGGCGACGAATGTGCTCGTTGGCCCATCGCTGCG
GTGGAGGCCCATGTTCGTATCTGGCGCTCTCGCTGCCATCGTTGTATTCG
AGTACTACTACATATTTTTCGCTGTGATGAAGCTACCACGAGATTGGGTG
CAAAGAACGTACTACTACATATTTTTCGCTGTGATGAAGCTACCACGAGA
TTGGGTGCAAAGAACGGGTGTTGAAATTCAAAGACTAGACTGTCGACGGA
GCACCAAAGGTGGAAAAAACGCGCAAGACCTAGTCAGTAAGTCCAGCCTT
AACCCATGCTTCTGCCCCAGCGACGGCTACTGCTACAATCTAAGTACAGG
GTGTTGAAATTCAAAGACTAGACTGTCGACGGAGCACCAAAGGTGGAAAA
AACGCGCAAGACCTAGTCAGTAAGTCCAGCCTTAACCCATGCTTCTGCCC
CAGCGACGGCTACTGCTACAATCTAAGTACAGAACGATGGGTTTCTCCCA
GCTTGTGCCCTACCGATTACACCGCGTGGTGCTTCGACAGCAACTTGACT
TATAACGATGGGTTTCTCCCAGCTTGTGCCCTACCGATTACACCGCGTGG
TGCTTCGACAGCAACTTGACTTATGTACATTTATACATTTCAGATGACCG
AGACTGCAAAGCTGGCCAGGGAGCACAGTGCACAAAAGACGAACCGTGTA
CACCTTGCGATCTGGAGAGTATCCAGGTACATTTATACATTTCAGATGAC
CGAGACTGCAAAGCTGGCCAGGGAGCACAGTGCACAAAAGACGAACCGTG
TACACCTTGCGATCTGGAGAGTATCCAGGGATTTCTGAACGCTGGTGTAC
CTGGGGCGTCTCGATGTCGACAGTGCGGGGCCGGGAACCGGGGCGCATGT
AACTTTGTCATTGATGAGGGCCCCTACTGCAAAAAATATCCATGGTCAAT
GGAAGTCGTACCATGCACCGTCTGCTGCACCGAACCAGAGGGATTTCTGA
ACGCTGGTGTACCTGGGGCGTCTCGATGTCGACAGTGCGGGGCCGGGAAC
CGGGGCGCATGTAACTTTGTCATTGATGAGGGCCCCTACTGCAAAAAATA
TCCATGGTCAATGGAAGTCGTACCATGCACCGTCTGCTGCACCGAACCAG
AG back to top
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