mRNA_H-paniculata_contig12699.1688.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12699.1688.1
Unique NamemRNA_H-paniculata_contig12699.1688.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12699.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12699contigH-paniculata_contig12699:3139..3896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.3712962-UTR-H-paniculata_contig12699:3138..34941622928991.3712962-UTR-H-paniculata_contig12699:3138..3494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12699 3139..3494 +
1691480693.4598072-UTR-H-paniculata_contig12699:3138..34941691480693.4598072-UTR-H-paniculata_contig12699:3138..3494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12699 3139..3494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.3843684-CDS-H-paniculata_contig12699:3494..38961622928991.3843684-CDS-H-paniculata_contig12699:3494..3896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12699 3495..3896 +
1691480693.4700558-CDS-H-paniculata_contig12699:3494..38961691480693.4700558-CDS-H-paniculata_contig12699:3494..3896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12699 3495..3896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12699.1688.1prot_H-paniculata_contig12699.1688.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12699 3495..3896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12699.1688.1

>prot_H-paniculata_contig12699.1688.1 ID=prot_H-paniculata_contig12699.1688.1|Name=mRNA_H-paniculata_contig12699.1688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MASLEEWQTLITSALGVVVAAVEYMDEEDRRIQLLGEGAISLAALAAVEK
TEREDHDEPRVKRTRRLYPRKDYGASAWAAMLRCDSLADPSSNAARQFRP
ISCPSCALSRPNEPSEGEEVVPLCSLRRRRMCRD
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mRNA from alignment at H-paniculata_contig12699:3139..3896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12699.1688.1 ID=mRNA_H-paniculata_contig12699.1688.1|Name=mRNA_H-paniculata_contig12699.1688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=758bp|location=Sequence derived from alignment at H-paniculata_contig12699:3139..3896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGATTATACCGTCTCTTATAGGGTTGATAAAATACACTCGAAAATGTA
AATTTGATTTTTTTGTATGAGAGATTTTGGATTCTTCATCTTGTAGACTC
GAAAAACTCGAAAACTGGTCTGGAGAAAATCGTTTTGGGAGGACCGACAA
CCCCCAGCTACAAAAATCTGGGAATTTTCGAAAACCCTCGCATTTCATCA
ACAGAATCGATTTTGTGGGAATTCAACGAGATACGCAGGCGTTACTCTGC
TTTTCTCTCAGATTGTCGATCTTTCATAGCACACAGTGGGACACCCACGC
TGGTCGCAGATGCCACGAGCATATAGAATTTTCCAACGTGTGGGCCCGTT
CGCCTTATGGCAAGTCTGGAGGAATGGCAGACGCTTATTACGTCGGCGCT
TGGTGTTGTAGTGGCGGCTGTCGAATACATGGACGAAGAGGACAGGCGTA
TTCAATTGCTGGGCGAAGGGGCGATTTCTCTTGCCGCCCTTGCGGCGGTT
GAGAAGACTGAGCGCGAAGACCATGATGAGCCTCGTGTAAAGCGCACGCG
ACGTCTATACCCCCGAAAAGACTACGGAGCGTCGGCGTGGGCAGCCATGC
TTCGCTGTGATTCCCTTGCCGATCCTTCCTCCAACGCGGCTAGGCAGTTC
AGGCCGATTTCGTGTCCTTCATGTGCTCTTTCTCGGCCTAATGAGCCTAG
CGAAGGAGAAGAGGTGGTTCCACTCTGCAGCCTGCGACGTCGCAGGATGT
GCAGGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig12699:3139..3896+

>mRNA_H-paniculata_contig12699.1688.1 ID=mRNA_H-paniculata_contig12699.1688.1|Name=mRNA_H-paniculata_contig12699.1688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig12699:3139..3896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGTCTGGAGGAATGGCAGACGCTTATTACGTCGGCGCTTGGTGT
TGTAGTGGCGGCTGTCGAATACATGGACGAAGAGGACAGGCGTATTCAAT
TGCTGGGCGAAGGGGCGATTTCTCTTGCCGCCCTTGCGGCGGTTGAGAAG
ACTGAGCGCGAAGACCATGATGAGCCTCGTGTAAAGCGCACGCGACGTCT
ATACCCCCGAAAAGACTACGGAGCGTCGGCGTGGGCAGCCATGCTTCGCT
GTGATTCCCTTGCCGATCCTTCCTCCAACGCGGCTAGGCAGTTCAGGCCG
ATTTCGTGTCCTTCATGTGCTCTTTCTCGGCCTAATGAGCCTAGCGAAGG
AGAAGAGGTGGTTCCACTCTGCAGCCTGCGACGTCGCAGGATGTGCAGGG
ATATGGCAAGTCTGGAGGAATGGCAGACGCTTATTACGTCGGCGCTTGGT
GTTGTAGTGGCGGCTGTCGAATACATGGACGAAGAGGACAGGCGTATTCA
ATTGCTGGGCGAAGGGGCGATTTCTCTTGCCGCCCTTGCGGCGGTTGAGA
AGACTGAGCGCGAAGACCATGATGAGCCTCGTGTAAAGCGCACGCGACGT
CTATACCCCCGAAAAGACTACGGAGCGTCGGCGTGGGCAGCCATGCTTCG
CTGTGATTCCCTTGCCGATCCTTCCTCCAACGCGGCTAGGCAGTTCAGGC
CGATTTCGTGTCCTTCATGTGCTCTTTCTCGGCCTAATGAGCCTAGCGAA
GGAGAAGAGGTGGTTCCACTCTGCAGCCTGCGACGTCGCAGGATGTGCAG
GGAT
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