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Homology
BLAST of mRNA_H-paniculata_contig12689.1684.1 vs. uniprot
Match: A0A6H5KKF7_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF7_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.650e-18 Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 802 GGGVRNPFVAFSSDPKHLLGAS--GKLNETDVRKKTLNPRWLKRYTCPLTVDNPSFLKHSHVSLLVWDRQAVVGSKNELIGVANISLGEVM-LNSYP 1083
GGGVRNP+V FSSDPKHL+ AS GK +T V+KKTL +W K Y+ L + +P L+HSHVSL+V D++ SK E+IGVAN+SL EV+ +N+ P
Sbjct: 375 GGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKWNK-YSFQLAISDPVLLRHSHVSLVVMDKERGRNSKGEVIGVANLSLAEVLWINNSP 470
BLAST of mRNA_H-paniculata_contig12689.1684.1 vs. uniprot
Match: D8LK92_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK92_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 1.840e-17 Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1
Query: 802 GGGVRNPFVAFSSDPKHLLGAS--GKLNETDVRKKTLNPRWLKRYTCPLTVDNPSFLKHSHVSLLVWDRQAVVGSKNELIGVANISLGEVM 1068
GGGVRNP+V FSSDPKHL+ AS GK +T V+KKTL +W RY L + +P L+ SHVSL+V D++ SK E+IGVAN+SL EV+
Sbjct: 423 GGGVRNPYVVFSSDPKHLVKASPAGKPPKTTVKKKTLRAKW-NRYAFQLAISDPVLLRQSHVSLVVMDKERGRKSKGEVIGVANLSLAEVL 512
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 2225 |
Cds size | 1158 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12689.1684.1 >prot_H-paniculata_contig12689.1684.1 ID=prot_H-paniculata_contig12689.1684.1|Name=mRNA_H-paniculata_contig12689.1684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=386bp
MLNSYPHKKPPLHHQPRPSPISISRRRSISSFLLQSKRPSLSPQSVQSMP MSGAHAPAGGGFGPPLSSSPRVGGGWGWRMTKPIAAVATPTTTTEVIRGR AATTGGSSVDWKIDGDILVAKGKYSQYSHRKDCSDGGISGCGSGGGSGGD SGDGARLTGEKYGSRDDDNDSDGCGDDGDPEADDKRSPSTTAMSGCVKVE ELGPCTEAAAAVVAAAAVRCEAQEDSVTRNTDGGREEKGGGAGKDSVKSN RGQQDGADAWGQRRERANTNSSLTSSPRAARGLLLQQRRHRSFSATVSRR FLRHRPNLSYDTASWTGGGGGGGGEGQRCSTQPHEVEVNNNSFHDIFKEG LEFDLPLVRHGLQRGRIRGRCVLVTDRGATFGFGGG back to topmRNA from alignment at H-paniculata_contig12689:47..5371+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12689.1684.1 ID=mRNA_H-paniculata_contig12689.1684.1|Name=mRNA_H-paniculata_contig12689.1684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5325bp|location=Sequence derived from alignment at H-paniculata_contig12689:47..5371+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GTTACACTACATAAAAACTAAGATAAAATGTGTGACGTAGTGTGACGTAA
AGAGCCCTGGTTTTTTTATCCACTTACTCGTATTTGTGGACCGCCACAAT
GATACCGCTCCCATCTCTTTGCCTCAAAAACTGATGTCCCAAACTTTCCC
GTGCCGCCAACGGATTTACAGTAGAGTATAACTGTGCCGGCGACCAATTT
AACGTTATATACCGTTCAAGCCACGATTTACTACTTCGTTGCCGTGGAAA
ATCGCTTTTCATTTTCACTCCAGTAAGTTCCATGAAGATGGCACTCCACC
CAAAATTTACCGCGGAAATTTACCATACCGTTAATCACCGTAGAGATTGC
GCTCTACCCAAAACTTACTGCGGAAAATTATGACTATTCACCGTACCCTT
AGTTACCGTAGAGATGGCGCTCCGCCCAAAACTTACTGCGGAAAATTTAG
TACCATTCAACATGCCGTTAATTACCGTGTTTGCTTTACCGTTACCGTTC
CACCCCATTTTCGGAAATCCTTACCGTGCCCAGCCTTGATGTATTTAGTG
GTTGCTGTCTGAAGAGAAGAAAATGTCCTGTCGATATTAATCCCCCTCTT
TCCCTCCTCCAGTGCAAAAGGGGTCATCGATAAATAGCACATAACGTCAT
GTGCTTCAAAAATTCATGACACCCACAGGCAGACCCCCATGAAACATTTT
TTTCTCGGGATTAGCTTCCCCTGTAAGGATTAAATGCCCTTTTTGTTATA
TACCATACCTTTCGACCGTCGATTTGTTGGCACCGTTGTTGGATTGGATA
GGGCGGAGGGGTGAGAAACCCTTTCGTGGCGTTTTCGTCCGATCCTAAGC
ATCTGCTGGGAGCCTCGGGAAAGCTGAATGAGACGGACGTGAGGAAAAAG
ACCTTGAATCCGAGGTGAGTAAATGAGTGAATAGATGTCGATGAAAGCAT
ATCACGCGTGTTAGATTCCCTGCAAGAGCGCCGTCATTGGTCTATTTTTA
CTTTTGGGTGTAAACAACTCCAGTTTGAAGCGCCCCCCTCGCCTGCAACA
GTCCAAATAGGGACGATAAGAACCACAACAAAAATAAGGTACAGCGCTGA
TTTCGTTGTAAGTGTGTTCGAATAGACATTCTGAGACAAACGTGAATAGC
AATAGTGGGTGGAAGGGGGGGGGGGGGTGTATGGCGAAGTGTGACAAATC
AGGGCCGCGGGACGCGTCTAGCAGATGCGTCGGAGCGTGTCCGAAAATGC
TGGGTATTCAATCGAAATATGATGAGTATCTACTGCAGAATGACACAGTG
TTTGATTCGACGCCATATCTCGAGATCTACAACAAGGAAGGTGACCCGAA
TTTTCGCGTAGCCCTTGTCTGTACACGGGCTAAAACTTTTGTTCGAGGCC
ATCGAGCAAGAATGTGAACCCCGTGAAAATATGGAGAAAAACGGGGAAAA
CGGCATGTAGAGATGTAAATTCAAAGCTAAAATATATATGAGAATATGGA
TGTGGCCAAGAAACAAATTTACCAACATGACCACATCGGCATAGTGGCAC
AGATAAGTACGAAAATATTCGGTTTCAAAATAATGTAGCTGCAGCGAGCT
ATCGTGGAGTATGACTCGCTCCATTTTCCACTATTCCTTTTTTATTGACT
TCGGACAAGCAATGCAGATGAGATGCGTCACGTCAGCTGCCGTTTCAACT
GGGGAATCCCCACATTATCAATAGCGACAATATGCAACAATGCAAAATGG
GGCATTTTAAAGATATTGTCGGAACGTTGTGGTGAAAGGTAAAGGAGATA
GGCCCAAAATGAAGACGGCAGTTACACTTGGGATGACTGTATGTTGTCGG
CACTTGGAAAAATATTTGCACGCACTCTTGTACGCAATACGTAATTGGTG
TTTTAGTTTGTTGCGATCGTTGACTTGTTATCAAACACACCGACGTCTAC
TTACTCATCACTCTCGCCCTCGCACTCGTCTTCCGTCAAAAAGTCGGCCT
CGAACTCGTTGAGTTCATCGCCCAACCCTCTCTTCCCCGCCTCATCCCAA
TCCTCGCCCCAAACACTACCGTGATGTATGATCTAGAAAAAATTGATTTC
GCCGATAAAAAAAAAAACGTGTTCCTCCACCTTGGATTCAAGGTGACCCT
AATGATCAACCCCCAGTTCTTCACCGCCACAGCAGATACAACATAACCTT
AAGGTGACCACATTCGCTATGTCAAGAGGAACACGTCTACGTTGGTTTCA
CTTTCGTACCTGTACCATATGGTCGTGGAGCGTGTTCGAAGTGACGTGCT
CTATTTTTGGGCGACATACCCGAATTCAAACCCCCTTTATTTTGCCCGTA
GATTGTTGGATCTTCGTTATTATTCTGCGTTGCATTGACATCATTTCCAA
CTTTCCAGGCATATAAAGTTTAAAGGAGATAAATAGGTTGTTGGGCCGCC
GCTCCGCGACAACTGGACAACTATGAGTGTAAAATTCGGGGAAAAATGCG
CTTTCAAAATTTGAATAGAACGTCTCTATAGCGTACTAAATACCATGTTA
ATGTGGTAGTAATCCACCTTCCCACTCTCCTGTGTTGTACCATTTTTCTA
TTTTCCTAATGGTTGTGATTCTTACTCTTCGGTCAACCCCCCCCGCTACC
TCCTCCCTTCTGCACGTTCGTTTGTTTTTGTGGCCGTTGTTGCAGGTGGC
TGAAAAGATACACGTGTCCGCTTACGGTGGATAACCCTTCCTTCCTGAAG
CACTCCCATGTTAGCCTGTTGGTATGGGACCGACAAGCGGTGGTCGGTTC
GAAGAACGAGCTCATTGGCGTCGCCAATATATCTCTAGGGGAAGTCATGT
TGTAAGTATGGGAGAGTCTCTGTAGTTTCTCTGTGCCTCTCTTTGTTTCT
CGCTCTGCGTGGACTTGTCTCTGTGAATCTCTTTCCCTATCTCTTGCCTC
TGTCTTTATTTCCTCACTGTCTCTTCCATACTAATATCATTATCTGCTTT
TCTTTTTGAGAAGTGGTAGGAGTAGGAGCGAGGGGGGGGATTGACATCTT
TACTGTAGCATCAACTCAAGGATGATAAAATAAATGTATTGAAAATATAA
AATAAGACGAAGAATCAACCATGAATGTGGGGCCCGGAATTATGCTGAAC
GCTAACGGTGAAGCCACGGGGCTACGTGCAATGCGTGTTTGTCCTCGACC
CACGAACTGCTGCGCTCTCAGTGGCTGTGTTACAAGGACGCTCGCATGAA
GAGTCTTGTTCAGTAGTTTGCTTGAGTGCAGCTGCAAAAATTTGTTCCGA
GAGGACGACTATCTTACCTTCTTGAATATCGATAACATCGATACTGGGTC
AGACGCGACTCACGACAAGAGCGTTTAACAATAATGCCTCATACAGATAT
GTACAGTATAATTATTCGTCCCAGAAATTTGAAACGGGTAACCTACTCCG
CGCGTTTTCTCTCCAAACAGAGCGTTTTGGATACTTTCCGGGGAAAAAAT
GCCTCGTTAGAAGTATTCAATATATACATGTTGAAACTACTACTGTTTTC
ATGAACTATTTAGGCGTTTCGGATTATCGTAGGGGGACAACGCCTCGTTA
GTTAGGAACTTCGAGATGCTGGTGTTGGACATTTCGAGGTGTCTAAAGAA
CGGATTAAGGCCGGTTTTTCAGTACAATCCTTCGTTCGTCTTGAGTCAGG
ATTTGTGCCACGGTCACTTACGACATGGGACGATCGAGCAACTGCAGCGA
GTGGCGCCGCGTGGGATGGGTGAATTCGAACATTGTCCTGAGACTGAACA
GTACCGCCGCGATGTGTGATTCGTTATTTTTTGTGTAGCTATTTGGTTAC
ATCTATTGAGGCACTGCGTCTGTTGGATCTGATTGACCTATTGGATCTGC
TGGATCTGTTGGACTTGCCGCCTACTGCTTGACAACGGATAGCGCTTTGG
TTGTCCGTGACTGTTTAACGTCAGAGAGCGATTGCGGATCAAGTGTCATC
ATTTGCTGGTGGTGGGATGTCGGTCGTTTGCTATTTTTTCCGTTTTGGGG
TGGCTTCCACCGTTTTATTCCTCATTTCACAAAACGTCACCCGACTCAAA
TGTTGTTGAAAAATCACGTCAAAAACCACGCAGGAATAGCTACCCTCACA
AAAAACCGCCGCTTCACCATCAACCACGGCCAAGCCCCATCTCCATCTCC
CGGCGACGCTCCATTTCCAGCTTCCTGCTGCAATCGAAGCGCCCCTCCCT
CTCCCCCCAGAGCGTGCAGAGCATGCCGATGAGTGGCGCGCATGCCCCGG
CGGGCGGAGGCTTCGGCCCGCCTCTATCGTCGTCACCAAGAGTAGGGGGA
GGTTGGGGCTGGAGAATGACCAAACCAATAGCAGCAGTGGCAACGCCAAC
AACAACAACGGAGGTAATTCGAGGGCGAGCTGCTACCACCGGGGGAAGTA
GTGTGGATTGGAAAATTGACGGGGATATTCTGGTGGCGAAGGGAAAGTAC
AGTCAGTACAGTCATCGTAAGGATTGCAGCGATGGTGGTATCAGTGGTTG
TGGTAGTGGAGGTGGTAGTGGTGGTGATAGTGGTGATGGTGCTAGGTTAA
CGGGTGAAAAATATGGCAGTCGTGATGATGATAATGATAGTGATGGCTGT
GGCGACGACGGTGACCCCGAAGCTGATGATAAGAGGTCGCCGTCTACGAC
AGCGATGTCAGGGTGCGTCAAGGTGGAGGAATTGGGACCTTGTACAGAGG
CGGCGGCGGCGGTGGTAGCGGCTGCAGCAGTGCGATGTGAGGCACAAGAA
GACTCGGTTACTAGGAATACAGACGGTGGTAGAGAGGAGAAAGGAGGCGG
GGCGGGTAAGGACAGCGTTAAGAGTAACCGCGGGCAGCAGGACGGCGCGG
ATGCGTGGGGGCAGAGACGCGAGAGGGCAAATACAAACAGTTCTCTCACG
TCGTCCCCACGCGCGGCACGCGGCCTCTTGCTGCAGCAGCGGCGACACAG
ATCATTTTCGGCCACCGTCTCCCGGCGATTCCTGCGACATCGGCCGAATC
TGTCGTACGACACTGCGAGCTGGACGCCAGGTGGTGGCGAGACGGGTGAC
GACGGTGGTGGCAGTGGTGGTGGTGGTGGTGGTGGTGGCGAGGGACAGAG
ATGCTCTACTCAACCCCATGAAGTCGAAGTGAACAACAATAGTTTTCACG
ACATCTTCAAGGAAGGACTGGAGTTTGACTTACCTCTGGTGAGGCATGGC
TTGCAGCGGGGCAGGATCCGTGGGCGCTGCGTCCTGGTGACGGACAGAGG
GGCCACTTTTGGGTTCGGCGGTGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig12689:47..5371+ >mRNA_H-paniculata_contig12689.1684.1 ID=mRNA_H-paniculata_contig12689.1684.1|Name=mRNA_H-paniculata_contig12689.1684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at H-paniculata_contig12689:47..5371+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTTATGTTGAATAGCTACCCTCACAAAAAACCGCCGCTTCACCATCAA CCACGGCCAAGCCCCATCTCCATCTCCCGGCGACGCTCCATTTCCAGCTT CCTGCTGCAATCGAAGCGCCCCTCCCTCTCCCCCCAGAGCGTGCAGAGCA TGCCGATGAGTGGCGCGCATGCCCCGGCGGGCGGAGGCTTCGGCCCGCCT CTATCGTCGTCACCAAGAGTAGGGGGAGGTTGGGGCTGGAGAATGACCAA ACCAATAGCAGCAGTGGCAACGCCAACAACAACAACGGAGGTAATTCGAG GGCGAGCTGCTACCACCGGGGGAAGTAGTGTGGATTGGAAAATTGACGGG GATATTCTGGTGGCGAAGGGAAAGTACAGTCAGTACAGTCATCGTAAGGA TTGCAGCGATGGTGGTATCAGTGGTTGTGGTAGTGGAGGTGGTAGTGGTG GTGATAGTGGTGATGGTGCTAGGTTAACGGGTGAAAAATATGGCAGTCGT GATGATGATAATGATAGTGATGGCTGTGGCGACGACGGTGACCCCGAAGC TGATGATAAGAGGTCGCCGTCTACGACAGCGATGTCAGGGTGCGTCAAGG TGGAGGAATTGGGACCTTGTACAGAGGCGGCGGCGGCGGTGGTAGCGGCT GCAGCAGTGCGATGTGAGGCACAAGAAGACTCGGTTACTAGGAATACAGA CGGTGGTAGAGAGGAGAAAGGAGGCGGGGCGGGTAAGGACAGCGTTAAGA GTAACCGCGGGCAGCAGGACGGCGCGGATGCGTGGGGGCAGAGACGCGAG AGGGCAAATACAAACAGTTCTCTCACGTCGTCCCCACGCGCGGCACGCGG CCTCTTGCTGCAGCAGCGGCGACACAGATCATTTTCGGCCACCGTCTCCC GGCGATTCCTGCGACATCGGCCGAATCTGTCGTACGACACTGCGAGCTGG ACGAATAGCTACCCTCACAAAAAACCGCCGCTTCACCATCAACCACGGCC AAGCCCCATCTCCATCTCCCGGCGACGCTCCATTTCCAGCTTCCTGCTGC AATCGAAGCGCCCCTCCCTCTCCCCCCAGAGCGTGCAGAGCATGCCGATG AGTGGCGCGCATGCCCCGGCGGGCGGAGGCTTCGGCCCGCCTCTATCGTC GTCACCAAGAGTAGGGGGAGGTTGGGGCTGGAGAATGACCAAACCAATAG CAGCAGTGGCAACGCCAACAACAACAACGGAGGTAATTCGAGGGCGAGCT GCTACCACCGGGGGAAGTAGTGTGGATTGGAAAATTGACGGGGATATTCT GGTGGCGAAGGGAAAGTACAGTCAGTACAGTCATCGTAAGGATTGCAGCG ATGGTGGTATCAGTGGTTGTGGTAGTGGAGGTGGTAGTGGTGGTGATAGT GGTGATGGTGCTAGGTTAACGGGTGAAAAATATGGCAGTCGTGATGATGA TAATGATAGTGATGGCTGTGGCGACGACGGTGACCCCGAAGCTGATGATA AGAGGTCGCCGTCTACGACAGCGATGTCAGGGTGCGTCAAGGTGGAGGAA TTGGGACCTTGTACAGAGGCGGCGGCGGCGGTGGTAGCGGCTGCAGCAGT GCGATGTGAGGCACAAGAAGACTCGGTTACTAGGAATACAGACGGTGGTA GAGAGGAGAAAGGAGGCGGGGCGGGTAAGGACAGCGTTAAGAGTAACCGC GGGCAGCAGGACGGCGCGGATGCGTGGGGGCAGAGACGCGAGAGGGCAAA TACAAACAGTTCTCTCACGTCGTCCCCACGCGCGGCACGCGGCCTCTTGC TGCAGCAGCGGCGACACAGATCATTTTCGGCCACCGTCTCCCGGCGATTC CTGCGACATCGGCCGAATCTGTCGTACGACACTGCGAGCTGGACTGGTGG TGGTGGTGGTGGTGGTGGCGAGGGACAGAGATGCTCTACTCAACCCCATG AAGTCGAAGTGAACAACAATAGTTTTCACGACATCTTCAAGGAAGGACTG GAGTTTGACTTACCTCTGGTGAGGCATGGCTTGCAGCGGGGCAGGATCCG TGGGCGCTGCGTCCTGGTGACGGACAGAGGGGCCACTTTTGGGTTCGGCG GTGGGTGGTGGTGGTGGTGGTGGTGGTGGCGAGGGACAGAGATGCTCTAC TCAACCCCATGAAGTCGAAGTGAACAACAATAGTTTTCACGACATCTTCA AGGAAGGACTGGAGTTTGACTTACCTCTGGTGAGGCATGGCTTGCAGCGG GGCAGGATCCGTGGGCGCTGCGTCCTGGTGACGGACAGAGGGGCCACTTT TGGGTTCGGCGGTGGG back to top
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