mRNA_H-paniculata_contig8867.16758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8867.16758.1
Unique NamemRNA_H-paniculata_contig8867.16758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8867.16758.1 vs. uniprot
Match: D7G6E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E8_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.230e-75
Identity = 121/221 (54.75%), Postives = 154/221 (69.68%), Query Frame = 1 
Query:    1 QMIAAIILCGKIPARSKVRSLFDMFDFDLDGKLNSCEVILMLR*STLSAVAKVTGGVSPTTAGVDNIWRYIVRSGYLGGEDSITLAQWIYFCSRTREVHALGKALDFNKGVCRRALASGTRALLPPLVVAEEDPELVARREELAKSARMKIXXXXXXXXXXXXXAREGKSKFGRSIVLRVKEVFDSAHTDGSGYVDEREWRRLTEGTPLGAPADTFLPTER 663
            +M+A + + GKIPAR KV++LFD+FD DLDGKLNS E I+MLR S L  +AK TGGV P  + +  IW++IVR GY   E  +  A+WI FCS+TREVHALGK+LDFNKGVCR++L SGTRA L  +V+ E+D  + A+R  L K  + +              AREG+++F RS ++++KEVFDS   DGSGYVDE EWRRLTE TPL A  DTFL  ER
Sbjct:   35 EMLAVLTMYGKIPARLKVKNLFDLFDLDLDGKLNSSETIVMLR-SLLHGIAKSTGGVLPNISDIQAIWQHIVRLGYTDEEGLLPFARWITFCSKTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAA-AREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIER 253
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BLAST of mRNA_H-paniculata_contig8867.16758.1 vs. uniprot
Match: A0A6H5JDE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE5_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 5.640e-74
Identity = 119/221 (53.85%), Postives = 156/221 (70.59%), Query Frame = 1 
Query:    1 QMIAAIILCGKIPARSKVRSLFDMFDFDLDGKLNSCEVILMLR*STLSAVAKVTGGVSPTTAGVDNIWRYIVRSGYLGGEDSITLAQWIYFCSRTREVHALGKALDFNKGVCRRALASGTRALLPPLVVAEEDPELVARREELAKSARMKIXXXXXXXXXXXXXAREGKSKFGRSIVLRVKEVFDSAHTDGSGYVDEREWRRLTEGTPLGAPADTFLPTER 663
            +M+A + + GKIPAR KV++LFD+FD D+DGKLNS E I+MLR S L  +AK TGGV P  + ++ IW++IVR GY   E+ +  A+WI FCS+TREVHALGK+LDF+KGVCR++L SGTRA L  +V+ E+D  + A+R  L K  + +              AREG+++F RS ++++KEVFDS   DGSGYVDE EWRRLTE TPL A  DTFL  ER
Sbjct:   86 EMLAVLTMYGKIPARLKVKNLFDLFDLDVDGKLNSSEAIVMLR-SLLHGIAKSTGGVLPNISDIEAIWQHIVRLGYTDEEERLPFARWITFCSKTREVHALGKSLDFSKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAA-AREGRNRFARSSIMKIKEVFDSVDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIER 304
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8867.16758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6E8_ECTSI1.230e-7554.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDE5_9PHAE5.640e-7453.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8867contigH-paniculata_contig8867:5889..9833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-10_001590.1
Exons5
Model size663
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8867.16758.1prot_H-paniculata_contig8867.16758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8867 8269..9833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.4221606-UTR-H-paniculata_contig8867:5888..60191622931109.4221606-UTR-H-paniculata_contig8867:5888..6019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 5889..6019 +
1691481594.4181507-UTR-H-paniculata_contig8867:5888..60191691481594.4181507-UTR-H-paniculata_contig8867:5888..6019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 5889..6019 +
1622931109.4341395-UTR-H-paniculata_contig8867:6486..66011622931109.4341395-UTR-H-paniculata_contig8867:6486..6601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 6487..6601 +
1691481594.427101-UTR-H-paniculata_contig8867:6486..66011691481594.427101-UTR-H-paniculata_contig8867:6486..6601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 6487..6601 +
1622931109.4459393-UTR-H-paniculata_contig8867:7007..71231622931109.4459393-UTR-H-paniculata_contig8867:7007..7123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 7008..7123 +
1691481594.435535-UTR-H-paniculata_contig8867:7007..71231691481594.435535-UTR-H-paniculata_contig8867:7007..7123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 7008..7123 +
1622931109.464298-UTR-H-paniculata_contig8867:8186..82681622931109.464298-UTR-H-paniculata_contig8867:8186..8268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 8187..8268 +
1691481594.452541-UTR-H-paniculata_contig8867:8186..82681691481594.452541-UTR-H-paniculata_contig8867:8186..8268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8867 8187..8268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.4773297-CDS-H-paniculata_contig8867:8268..83701622931109.4773297-CDS-H-paniculata_contig8867:8268..8370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8867 8269..8370 +
1691481594.464206-CDS-H-paniculata_contig8867:8268..83701691481594.464206-CDS-H-paniculata_contig8867:8268..8370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8867 8269..8370 +
1622931109.4934359-CDS-H-paniculata_contig8867:9716..98331622931109.4934359-CDS-H-paniculata_contig8867:9716..9833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8867 9717..9833 +
1691481594.4743912-CDS-H-paniculata_contig8867:9716..98331691481594.4743912-CDS-H-paniculata_contig8867:9716..9833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8867 9717..9833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8867.16758.1

>prot_H-paniculata_contig8867.16758.1 ID=prot_H-paniculata_contig8867.16758.1|Name=mRNA_H-paniculata_contig8867.16758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MKIVVHREQKRAAAAAAREGKSKFGRSIVLRVKEVFDSAHTDGSGYVDER
EWRRLTEGTPLGAPADTFLPTER
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mRNA from alignment at H-paniculata_contig8867:5889..9833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8867.16758.1 ID=mRNA_H-paniculata_contig8867.16758.1|Name=mRNA_H-paniculata_contig8867.16758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3945bp|location=Sequence derived from alignment at H-paniculata_contig8867:5889..9833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGATTGCCGCGATAATCTTGTGCGGGAAGATACCTGCGCGCTCCAA
AGTACGGAGCCTGTTTGACATGTTCGACTTCGACTTGGATGGAAAGCTCA
ACTCTTGCGAGGTCATCCTTATGCTCAGGTGGTAAATATGTTAATCTTGG
AAATGTAATCATGCTCATAACAATCACGACCTGGAGTGCGCTCCAGAGTG
CGAAGATAGGTATACTCCGTGCGGGGGTAACGATTACAGCAAGGTTGCGA
CGGCGAAATCGCATGGCCATTCTGCGAGGACCACAAAATAAAATCAGAAT
GCAAGAGAACACATCCAACAACGATTCACACCACAGACTTGTACGATACC
GGAAGATGAAGAGGATATCGTGGACTCCATCGTTTGCGTAGACGTTCTAA
TTCCCATTTCAACGGTGTTCTTACTTCTACCCTGGCAATACGATCGATAG
CAGTAAGCTTATGATTGTCTTGTATATGTCTCGGTCGATGTCCTCTGTTT
ATGCCACCGCAAGGAGAAACGTGCCTGCTTGTGGAAGTAACTGTTCATCA
CCGATCGATTCTCCCCACGACCTCATCCTTCCTGCCTCTCGCCGCTAGAT
CAACTTTGTCCGCAGTAGCCAAGGTGACCGGGGGCGTTTCACCAACCACA
GCAGGTGTCGATAATATTTGGAGATACATCGTGCGATCGGGATACCTCGG
CGGCGAAGATTCGGTGAGGAAATTATTGGCAGGCAAGAGCGTTTTCGGGG
ACCGTGCGGCAATGTCCCTACACGGTTGAACAAGGTCGCGTTCAATTCTC
ACTTCAGACCGAAAAGCAGCGATCGGATGCAACTGTAACGGATAGCCAGT
CGGTTGTTGCATAACATGTTATTATCCAAGTTGTCGCATAGGAGATGAGA
CAGAAGCTTGCGTGTCGCTTGACCGGACGTATACTCTTAGGGACAACAAA
TGACACCACTTTCGCGCATTTTCCGAACCCGTTCTTGATGCACCACCGTA
GGCCAAAACCTTGAATATCTGAGCGTTGTCAGTCATGGTCGCTGCCACAG
GCCAGTCTGATCGCTGCTCGATCGTTACAAGATTTTAACTTTCCGTTACA
CTTTCGCGGATCGCCGCAGATCACCCTCGCCCAGTGGATTTATTTCTGTT
CGAGAACTCGCGAAGTACATGCCTTGGGAAAAGCGCTTGACTTCAACAAG
GGAGTCTGTCGAAGAGCCCTGGCTTCTGGAACACGGTGAATGAACTCTAA
GAATACGGCATATCTGTTGACTTGGCGTCAGAATGACCCAGGTATAGTTT
TTGTGAAGTAGACAAGCAAGGCACGTTTCAACATAATAGGGAACGCTCAC
TGGTGAAAGTGGCGTTTTTTTCTGGTACTTGAAAACACATCTTACGTGGC
AGACCAGCACGTGGCCAAGTAAACCCCGGCTAGACAATTTTCCGTACGCT
GTACAACAACAACAACAAACACTCAGCGCTTACCCGAAGAGCGATTGGAC
GTTGGCAAAAAATGAGCGGCAGTAGGTACTACCACGGTGGTGCAACCATG
TGCTGAGAAAGCCCTACTATTTGATTAATGCATCGAACGAGCATGTCTTG
ATTCGTACTGCATCGTTATGTACACGCAAATACTGGTGCCGGGAATCCCG
TTTGGTTAGTTCGGTATGGTTAGGTTGACTGGGCCCTATTCGCTTTATAC
CATAATTTCAGCGTGGAGTCGTTTTCGCAATCGCCTCGGGGCCACAACGA
TCAACCCCGAAACGACATCTATTTTTCGTCTAATCGCCCCCTGAACGGGA
AGATCGCCCCGGGGCGTTCAATGTATGTATTTATGTTGAAGACTGAGGAT
GCGATACGATAATGCAGAGTATCGACCGTCGGGAGGTTGACACGGGATAT
TGTTTGAATGTTCTAGAGTCGGAACCGTCCGCGGTTTGTTGCTTATTGGA
TGTTCAGTAGCTGGAACGTCCCGCGAGTTATTTGGGGATTTCTAGAGCAA
GATGTTGTCCACGACACGGGAGGTGCACCGGTCTCCTCTTTCTCGCTCTC
GTCTGTACATCACAATAATTGAACAAATAAAATACTGCGCCTGTACTACT
GTGTCATAAGCCACAGAGATATCTGTATATCCCAACATTTTATTCGAGAG
AAAAAAGTGTTTCGCCCCTGGGGGAGTGCTGGCGGCGCTTTACGGTATAG
AAAATTTTCTTCCCTGAAAAATCTACGTTTGTTTGTCTTTGTTTCTTCCG
CATCCCTCAAACCGTTGGAAACACCAAAAACACATACAAAAAACATAGAG
CGTTGCTTCCGCCGTTGGTCGTCGCCGAGGAAGATCCCGAACTGGTCGCA
CGGCGAGAAGAGCTGGCGAAAAGTGCCAGAATGAAGATTGTTGTCCACCG
CGAGCAGAAGAGAGCGGCGGCGGCGGCGGCGCGCGAGGGCAAGAGCAAAT
TTGGGCGGTCTATCGTCCTTAGGGTCAAGGAGGTGCGCGCCTCGCGACGG
TTCGTGGGTCATAGCCCAGGCTTCTGGCATACAGTATCTGAAAATACAGT
TAAGGCTTCTGGTACTGGGTACATGAAGTTTTACGGTAGCTAGCTGTGTG
TTTTCCTTATGGTGGGGGTTCGACTTGCAGGTGTGCGATACGGGCTGCTG
TTGTGCCCACCACCTGAAAAACATACCAAATGTCGTTTTCTAGCCGCCGC
TTTTCAGGCCCATGGACGAACGAACGCACCAAAAAGTACACGATAATTCG
TGTTTAGGTAGCTGCGAGTTAGCCCTTGAGAGGCTTATACCTTGAGAATC
TGTTTTCTGGAATCTGTTCTTTTACCGCTGTTTCCACGCAAATAGCTAAT
AATATGCTTGAAAAGAGCGAGAGAGATGACTTTACAGGCGAGGGAGTGAT
CCGTTGGTTGATTCGTCGGCATTTTTCTCTCCACCGAGAAAGCAACAGCG
GTTGATTTTTGTACTTATGTCGCGCCCCGAAATGGGCGATCAATCACTTC
TGTACTCTCTTATGGATTTGAAAAATGCTGATGACTATATTTAGCTGTGA
TTTGGGGCTAAGTAAACAACCTCAGCATGAAATGCGTACATGTCGTTACA
TCAATATTTATACACGACTGTTTAGAGCATAGCATATATATATATATATA
TATATGTGTGTGTGTGTGTATGTATATATGTATGTATATATGTATGTAAT
ACCTCTGGCCCATAAGTCTGGTTGTAACGGTATTTTGTAAATATCTGATG
CATTCTTGGGTTTCATGAAAGATGAAGCATATCATCCGAAGACCTACACG
TGCAGCTTGCATTTCCGATTAACAGAGCCACTGACGACGCGGCCTTCCCT
TGGTGGATTGATGAGGAGAATGATAGTAATGAAGAAGGGATGTATTGTGT
TTATGCAGTATGAAACGACAAGGAATACAAAGCAAAAAATCGTTCTTAAT
CGGAGATCTATTTGAGGCTCTATTTACTATTAAGAATGATTTTCAGCGGA
TATCGGCCTATTCGGTTGTTTTTGCAAAATCTGCCATTTCCGAAAGAGAA
AAACGTGTTGAGATACCTGGCTTTCATCCGAATTAGAAAAATAGTTTACT
TATGGGACAGAGGGGTCGTATGTATCAACACTTTTACTAGGATCCAGGGC
GGGGTTATCATGCGCTTGCTTGTTTGTGCTATACCAACTCATGTATATTC
TATCTGTTACACACGGAAGTGATGATAGGGTCATACTTCTTCATGAATGC
GGTAGTCTGAGTGCTGTCTCTAGTCCGAACTTCTCTATATGGTGTTGCCA
TCAATTTGCACACGATATTACTGTAAAGGTATTCGACAGCGCACATACAG
ACGGCAGCGGGTACGTTGATGAGCGAGAGTGGCGAAGGCTGACCGAAGGC
ACACCACTTGGGGCACCGGCGGACACTTTCCTTCCGACAGAACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig8867:5889..9833+

>mRNA_H-paniculata_contig8867.16758.1 ID=mRNA_H-paniculata_contig8867.16758.1|Name=mRNA_H-paniculata_contig8867.16758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig8867:5889..9833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGATTGTTGTCCACCGCGAGCAGAAGAGAGCGGCGGCGGCGGCGGC
GCGCGAGGGCAAGAGCAAATTTGGGCGGTCTATCGTCCTTAGGGTCAAGG
AGATGAAGATTGTTGTCCACCGCGAGCAGAAGAGAGCGGCGGCGGCGGCG
GCGCGCGAGGGCAAGAGCAAATTTGGGCGGTCTATCGTCCTTAGGGTCAA
GGAGGTATTCGACAGCGCACATACAGACGGCAGCGGGTACGTTGATGAGC
GAGAGTGGCGAAGGCTGACCGAAGGCACACCACTTGGGGCACCGGCGGAC
ACTTTCCTTCCGACAGAACGTGTATTCGACAGCGCACATACAGACGGCAG
CGGGTACGTTGATGAGCGAGAGTGGCGAAGGCTGACCGAAGGCACACCAC
TTGGGGCACCGGCGGACACTTTCCTTCCGACAGAACGT
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