mRNA_H-paniculata_contig8864.16754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8864.16754.1
Unique NamemRNA_H-paniculata_contig8864.16754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8864.16754.1 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.040e-29
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:  229 EEKAVVALEALYSGPLQERSLAQAREIFSFHRAKGQGHLLEKVPSLDGGVTVLDTVALFDIVTKLGGVRHVHTQNLWKEVMDELGIQFDRQALVGVTMHYKAFLFGYEQV 558
            +E+AV ALE+LYSGP++ R L +AREIF+F R+ GQG +L  VP ++G   +LD VAL + +TK GGVR V  + LW EV  ELG+   +Q L  +++HYK FL+G+EQV
Sbjct:    2 DERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQV 109
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BLAST of mRNA_H-paniculata_contig8864.16754.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.900e-27
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:  229 EEKAVVALEALYSGPLQERSLAQAREIFSFHRAKGQGHLLEKVPSLDGGVTVLDTVALFDIVTKLGGVRHVHTQNLWKEVMDELGIQFDRQALVGVTMHYKAFLFGYEQVK 561
            +E+AV ALE+LYSGP++   L +AREIF+F R  GQG +L  VP ++G   +LD VAL + +TK GGVR V  + LW EV  ELG+   +Q L  +++HYK FL+G+EQ +
Sbjct:    2 DERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8864.16754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0R8_9PHAE7.040e-2951.82ARID domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEX2_ECTSI2.900e-2749.55ARID/BRIGHT DNA binding domain containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8864contigH-paniculata_contig8864:1216..6609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size579
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8864.16754.1prot_H-paniculata_contig8864.16754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8864 1216..6396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.1348763-CDS-H-paniculata_contig8864:1215..13291622931109.1348763-CDS-H-paniculata_contig8864:1215..1329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 1216..1329 -
1691481594.2906547-CDS-H-paniculata_contig8864:1215..13291691481594.2906547-CDS-H-paniculata_contig8864:1215..1329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 1216..1329 -
1622931109.1515698-CDS-H-paniculata_contig8864:2249..23781622931109.1515698-CDS-H-paniculata_contig8864:2249..2378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 2250..2378 -
1691481594.29927-CDS-H-paniculata_contig8864:2249..23781691481594.29927-CDS-H-paniculata_contig8864:2249..2378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 2250..2378 -
1622931109.1691537-CDS-H-paniculata_contig8864:6273..63961622931109.1691537-CDS-H-paniculata_contig8864:6273..6396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 6274..6396 -
1691481594.3078458-CDS-H-paniculata_contig8864:6273..63961691481594.3078458-CDS-H-paniculata_contig8864:6273..6396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8864 6274..6396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.1890366-UTR-H-paniculata_contig8864:6396..66091622931109.1890366-UTR-H-paniculata_contig8864:6396..6609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8864 6397..6609 -
1691481594.3191652-UTR-H-paniculata_contig8864:6396..66091691481594.3191652-UTR-H-paniculata_contig8864:6396..6609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8864 6397..6609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8864.16754.1

>prot_H-paniculata_contig8864.16754.1 ID=prot_H-paniculata_contig8864.16754.1|Name=mRNA_H-paniculata_contig8864.16754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MAAAGEEKAVVALEALYSGPLQERSLAQAREIFSFHRAKGQGHLLEKVPS
LDGGVTVLDTVALFDIVTKLGGVRHVHTQNLWKEVMDELGIQFDRQALVG
VTMHYKAFLFGYEQVKVFVCD*
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mRNA from alignment at H-paniculata_contig8864:1216..6609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8864.16754.1 ID=mRNA_H-paniculata_contig8864.16754.1|Name=mRNA_H-paniculata_contig8864.16754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5394bp|location=Sequence derived from alignment at H-paniculata_contig8864:1216..6609- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAATTGCTACATACGGGACTACGTTTATTTGCCGCGAGAAGGAGTTTA
CGTACGTAGATACGAATATATCAGCATATGCCCTGAGCAGCCGGTTGCTT
TCTCGCGGAACTTTCCTTATTGACCGTGGGTCTGACTTAGAATATTAACA
TATGAAAAACAAAATAACATATTAGATGTCCTGAAGGTCATTTTGGAGGT
GATACTTGAGGTGATGGCGGCCGCTGGCGAGGAGAAGGCGGTGGTAGCGC
TAGAGGCATTGTACTCGGGTCCTCTTCAAGAGCGCTCGCTTGCACAAGCT
CGTGAGATATTTTCTTTTCATCGTGCGAAGGGACAGGTGCAGCATAGCAT
TGGCAACGTGTATATAGGTCTGGTCTTTGTATGGGAGAGGTAGTTGTACT
CGTGTCGGGGTAGATATCAGACGAGTGTTATCAGACGTATGAAGGATTTA
GTGCCTCCGGGTCGTTGGTCACAATACATGGAAGTAGTAGTGAACTCGTT
TGATTCTTACTCTCCCTTGATTTCTTGGCTTTTCTGTGCTTTTGCGGTCC
CTGCAGCTGGGCTGTGCAGTATTTCCAGCTGTACAGTACAATCGTCTCTT
CAAAGTGCAAGTTCACGATACAGTATTCTGAGAGACCTGTACCGTAGGTA
AGAGAGGGGTGTTGTCTGGCGTATGCACAACTCAGGCTTGGGGCTGTCTA
GTTGGTGACAATACATAGGTGAACCATGAAATCAGTTTGACTCTTGCTTG
TGTAGACCTCTAGTTTATTTGCTTTGCTTCTTGAAGTCCCTGCAGTTCTC
TGTTCTGACTGTCAATCCATTTTGAATGTCCGATTTAAACCCTTTTCGTA
CCACTCGAGTCTCTCGTGTGTGAGGTCGTTCCGCAAGGGCGCGCTTGCGC
ATGAAATGCCGTTACAGGGTTACGTACAGCAGTTGGTGAAATATAAGATC
TATAGACGTTCACTGGGTGGTGCTTGTGTTTTATTTTCAAAAGATATACG
TCGGCCATGGCAGATTTTTAAAAAATAGCGCCGCTCGGAGAAACCTATAC
AGTAGTGGACCCGATATAAGGCGGTAATTAATAAGGCAGGATTGTATATA
AGGCGGATGATTTTGTGGCGTCTCCCGATTTTTTACTCTATAAGACGGGT
TCTCTATTTTACATCATAACCTGCCTTATCCCGGGTCCGCCACCCCCCTA
TAGCAACGAGTTTTTTTATTGTATCGCCACCATCCGCCTTATTTCCAGGG
CTCTTTACGTCACACTACGTCACACATTTTATCTTAGTTTTTATGTAGTG
TAACGTTCGTTACACTACATAAAAACTAAGATAAAATGTGTGACGTAGTG
TGACGTAAAGAGCCCTGCTTATTTCAAGTAGCTGACCAGCTAAACACACA
CGGCAGCGTACCCGCCATGCCCTGCGTAGCTGGCAGTCGCTGCAAATTCC
CAGCGCTCGCGCTGGACCCGCTGGGTTCTACCAGTCACAAGTGCCGCAAG
TGCGGCGAGCAACTACATGGGGTATGCGGCCTGCCAGACCCTCTAGGCGA
CCGCGAAACCAAGCGTGTTTTGTGATTTGACCCAATATAAGGCGGTACCT
GCCTTATAAAGGAGTAAAGCGGGGTTCGCTATAAGGCGGTTGATTTTGGC
TTGTCCCTAGGCCGCCTTATGTCGGGTCTACTACTGCAATCAATTCAAGT
GTGACTGTAAACCCCTGGACACCCTAAAGTTTGTAACTTTCTTTTTTTTT
CGGTCCCCGGGAGACCAGGAAGGAACCCCTCCCATGCACTTATACAATAA
TGAAAATGCTGTCGTACGGCGCTTTGCCGGTTTCTCGGTGCGCCCCGCTT
TCACCTCGTTTTGACCCCTATTTGGGACGTCATCACAAAGATTTCCGCGG
ACGGGTAGGCACCTAGGTGAGCTCTTCTCCGTTCTTACTCAGGTAGTCTC
GGAGTCAAACCGAGTAAACCTCCTGCAAACACTCCCAGCTCGACTCTGTA
CACGAGTCACCCTACCCATCCGGGCGTCGATCCTCCAAAGTGTGTAACTT
GGATCCATTTGCATCCAAAGATTTGAAAGTGCACTGTACAGGGGGGCAGT
ATAGCCCCCGAGATAATGAGAAACACTTTTATCGGGTGAGACTCAAAACC
TTATTTCGGCGAGAACCGCGAGCTGTAAGCACTGTTTATCACTATTACAC
AGGATTATTGTAGTACTGGGCGTCATAACTTGAGCCGGATTTCTCATGGA
TCCAATAGGCGGTATCTTATCGGGGGCACTTTGAACGTGATGTTGCACCG
TTTTTCAAAACCAATTTTGAAAAAGTGCTTACTGCGTCATAATAGTGAGC
CGTGTCTCAGTCATCGAGATACACAACGAAACGATTCTAGATTGGTTTTA
ATACAGGACCCGAAATCGCTTTTTAAAGTGCCCCGACAAGGCACGACCTT
AGGAGCCGTTCTAAACCAGGTCGTTTTTTGTCCAATTTTTCCGTTCTCCG
AAAATCGTCAGTTGCAATAGCAAGCTCAAAATCGAGGGAAACGTGCAGAA
ACACTGCAGCATGCTGCCCTCATCCGTACGTCTGGTGCACTTTGGTCACA
GGCGTCAAGTTGTTCAGCTCGCTATCGCGATTGCCGTTCTTCGGGAAACG
GAAAGAAACGAAAAACATAGGACAAAAAACGTCCTCGTTTAGATTAGAAC
ATGCCTTAGCAATAAAAATCAATCGATCGAGTCTCACTTTCTCGTGGTTG
GATAAGAACTTTCTTGTCAGCAGGCCGGCACTGTGCCCAAAAAATATAAT
CGAATCATCGTGCACCCTTCCTCTCAGAACGTGAGGGTACAAGACTGATG
CTGAGCCGAAACAAAGCCAGGTGACTTTAGCCAAGAGGTATATAGATCTA
GGCAACATGATATAGCAACTCGTTACCCCCAGCGCTACGTCCAGAATTTC
GCAATTCCGCGCCCGATAAAGGAGACGAGACCGGCCGCCATCGAGGCAGA
CATACATTCCACCGGCCAATAGGCCAATTTTTCCAGAGTTTTAGATCTCT
TCCATTTTTCGAGGGTAACCGAAAAAATGGCGGAATGATGCTTTGCCAGA
GTGAGCTTACTGTAGCCCCTATAATACGATAGCGCGCTACTATTTTGATA
TCTTTACCGCGGAAGCTGTCATATACATTGACCAAGTATATATGGTGCTC
AACACCAATTTTCAATCATCAATAATGTAGCCCATCAACAAATGAAAAAT
ACGAAATACTTGTTACAGTATTGATGCAGCGTTGGATTGATTGCACATAA
ATGTTGTCAATGTTATTTTTTACAATTTGAAATGGTTGAAAAACTGTCCT
CCGAATCCGGTTTTTTTTTTTTTCGTCTCGAATGACATATTTCGAAAAAA
AAAAGCGAAATTGGCCCGAATTTCAATATGCCATTGGAAAATTTTAGATT
CATCAAGATCCAGGCATGCCGTCCGAAAGCCGAATTACATGCTGGGATTT
GAAGAATCTCGAATTTGAAAGTATATATATATTTTTTTAACGTAATGGGT
CAGACTTGACGAGACGGAAGAAGTGTATATGTATATATATATACACACAT
AATCAGATTACTAAGGGCATTTTTGCAGAGTTAAATTTGGCTTTCGGATT
AGTCAAGCTCCGAAGATGTTAGTACTACCGTAATATTCGAACATAAAAAT
AGGTTAAACAAGCCAATAAAATGGCTCTCCGTTCGTTCGATGTTGACAGA
AATAGCGATTAACGCCATCATCCAGTTCATTTCCGTTCAAACAGTTTTTT
CCAGTCAACCGTCAAGTTCGAGATGTAGCTATCTATATATAGTTGAAATA
AGTACCGTGAACAACACCATCCAGTTAACGTACGATTAATCATAACTGCC
TGTTAACCGAAACCTTCAAGTAGTGTATATCTGACTGTTATTAGCAGAAG
TGTTGACGAAACAAGGACCCAGCAATACTCGGAACAAGCTGCAAATCTAC
GCCTTACAACACAACAGGTGAAGCCAGAAAAAACATAAAACGCGCGCGAC
GTGTCAAATATTTTTTGGATAATGACCTTCAAGGCTAAAAATCACACTGC
GAAGTTGACTTGCAACGCTCCACGAGCCAAATGTTAACTCTCGCGGCGTT
TTTTTTTTTTTTTTTTCGAGTTTTAGTCTGACACTGGCTGGATGTAACGG
TATCGCCGTCATATTTTTCGTTTATCCCCAGGGGCATCTGCTGGAGAAGG
TGCCATCCCTCGATGGCGGAGTCACCGTGCTGGATACCGTAGCCCTATTC
GACATCGTCACCAAACTCGGAGGAGTGCGCCATGTTCATACCCAGAATTT
GTGGAAAGAGGTCGGCCAGTCAGTCACGTCACCATACCGAGAGCGGAGAA
AAAAACAAACAAACGTTGTTGTCTCTTGTGGTTATGTAAACAGTAGTTTT
ATCGTTGGGAGATGACTGGAGCGGGGGGGGGGATGTCAACCAAGTATTAG
CTCTAGTGCCCGTATGATAACTCAACCATCGTACCCATCTTGAAGGTTAT
GCAGCTTTCCTCGAACTCCACTTGTATACATTTATCTATCAAAACTAGAA
CATGACCAATATGGGGGGTGGGTGTACTCATAAAAACGCATGCCGTAGTC
TTCCGGCCATTGACATTGTATTCCTACAATGCCAGGACGGAGCATGACGG
GTTTTTGTCGCCCAGGCTATGTTTCACAAGGGTGACAGTAGCCACTATGC
AGTCATCAGTTATTCTGGCGTTGCTGTGCCTATCGGGTTTGTCGTTGGGG
TTTAGAGCACCCCGGGAACCAAATGTTATACATTCGGCGGGGGTGACTGT
GCCCGCAAGTACCACACGAGGTTTTGGTCTTCGTGCGTATGTGTGTCCTC
AACAACGTCGCGCCACACACAGCGAGACACATAGTTTCGTGTGTGATACA
CACTTGGAGTATAATCTGATTATGTACTCTTGATGGAGCACGTCGTAGGC
GTTTTTGCTCTAGTGCGTTGCAACTACCGGTTGAGCAGGCATCCCGCAGG
GTGTGATCTATTCGGTGGAGGTCGATAAGCTCACCGGATATACCACATTA
ACCATGGGAGAGGGGGAGATGGGCAAAACCGGCAAACATCGAGGAATGCT
TGAAGTTTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGAGGGAAATGAT
ATACACAGTAAAGACAGTAATTATCAGAAAACCATGAGACGAAAATGTCA
TAACACGTAACACGCTGATTGACACAACAGGTGATGGATGAGCTGGGTAT
CCAGTTCGACAGGCAGGCTTTGGTCGGCGTGACGATGCACTACAAGGCAT
TCCTCTTCGGCTACGAGCAGGTAAAAGTGTTTGTTTGTGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8864:1216..6609-

>mRNA_H-paniculata_contig8864.16754.1 ID=mRNA_H-paniculata_contig8864.16754.1|Name=mRNA_H-paniculata_contig8864.16754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig8864:1216..6609- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCCGCTGGCGAGGAGAAGGCGGTGGTAGCGCTAGAGGCATTGTA
CTCGGGTCCTCTTCAAGAGCGCTCGCTTGCACAAGCTCGTGAGATATTTT
CTTTTCATCGTGCGAAGGGACAGATGGCGGCCGCTGGCGAGGAGAAGGCG
GTGGTAGCGCTAGAGGCATTGTACTCGGGTCCTCTTCAAGAGCGCTCGCT
TGCACAAGCTCGTGAGATATTTTCTTTTCATCGTGCGAAGGGACAGGGGC
ATCTGCTGGAGAAGGTGCCATCCCTCGATGGCGGAGTCACCGTGCTGGAT
ACCGTAGCCCTATTCGACATCGTCACCAAACTCGGAGGAGTGCGCCATGT
TCATACCCAGAATTTGTGGAAAGAGGGGCATCTGCTGGAGAAGGTGCCAT
CCCTCGATGGCGGAGTCACCGTGCTGGATACCGTAGCCCTATTCGACATC
GTCACCAAACTCGGAGGAGTGCGCCATGTTCATACCCAGAATTTGTGGAA
AGAGGTGATGGATGAGCTGGGTATCCAGTTCGACAGGCAGGCTTTGGTCG
GCGTGACGATGCACTACAAGGCATTCCTCTTCGGCTACGAGCAGGTAAAA
GTGTTTGTTTGTGATTAAGTGATGGATGAGCTGGGTATCCAGTTCGACAG
GCAGGCTTTGGTCGGCGTGACGATGCACTACAAGGCATTCCTCTTCGGCT
ACGAGCAGGTAAAAGTGTTTGTTTGTGATTAA
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