prot_H-paniculata_contig8864.16754.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8864.16754.1
Unique Nameprot_H-paniculata_contig8864.16754.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length122
Homology
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BLAST of mRNA_H-paniculata_contig8864.16754.1 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.310e-30
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 0 
Query:    6 EEKAVVALEALYSGPLQERSLAQAREIFSFHRAKGQGHLLEKVPSLDGGVTVLDTVALFDIVTKLGGVRHVHTQNLWKEVMDELGIQFDRQALVGVTMHYKAFLFGYEQV 115
            +E+AV ALE+LYSGP++ R L +AREIF+F R+ GQG +L  VP ++G   +LD VAL + +TK GGVR V  + LW EV  ELG+   +Q L  +++HYK FL+G+EQV
Sbjct:    2 DERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQV 109
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BLAST of mRNA_H-paniculata_contig8864.16754.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.820e-28
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:    6 EEKAVVALEALYSGPLQERSLAQAREIFSFHRAKGQGHLLEKVPSLDGGVTVLDTVALFDIVTKLGGVRHVHTQNLWKEVMDELGIQFDRQALVGVTMHYKAFLFGYEQVK 116
            +E+AV ALE+LYSGP++   L +AREIF+F R  GQG +L  VP ++G   +LD VAL + +TK GGVR V  + LW EV  ELG+   +Q L  +++HYK FL+G+EQ +
Sbjct:    2 DERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8864.16754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0R8_9PHAE4.310e-3051.82ARID domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEX2_ECTSI1.820e-2849.55ARID/BRIGHT DNA binding domain containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01014ARID_2coord: 24..113
e-value: 1.8E-4
score: 30.9
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 23..118
e-value: 7.4E-4
score: 20.6
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 31..113
e-value: 5.1E-10
score: 39.9
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 22..117
score: 15.195
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 7..118
e-value: 1.5E-14
score: 55.4
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 31..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8864contigH-paniculata_contig8864:1216..6396 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8864.16754.1mRNA_H-paniculata_contig8864.16754.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8864 1216..6609 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8864.16754.1 ID=prot_H-paniculata_contig8864.16754.1|Name=mRNA_H-paniculata_contig8864.16754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MAAAGEEKAVVALEALYSGPLQERSLAQAREIFSFHRAKGQGHLLEKVPS
LDGGVTVLDTVALFDIVTKLGGVRHVHTQNLWKEVMDELGIQFDRQALVG
VTMHYKAFLFGYEQVKVFVCD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf