mRNA_H-paniculata_contig8842.16744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8842.16744.1
Unique NamemRNA_H-paniculata_contig8842.16744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: D8LLX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX5_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.380e-33
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEPVYFTPKVGAYDMWAIKYGYMEVEGE 246
            +VGHTLGLRHNF+GST  +L +LQD +KT+E GLTSSVMDYLP+N VSSK+QG+  P YFTP+VG YDMWAIKYGYM VEGE
Sbjct:  390 EVGHTLGLRHNFEGSTLLTLEELQDPTKTAEVGLTSSVMDYLPLNVVSSKMQGSAVPHYFTPRVGEYDMWAIKYGYMAVEGE 471          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A835ZFA7_9STRA (DUF4953 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.270e-24
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGA-------DEPVYFTPKVGAYDMWAIKYGYMEV 237
            +VGHTLGLRHNF+GST  +LA LQ    TS+ GLT+SVMDYLPIN VS+KL+ A        +  YFTP +G+YDMWAI+YGYM+V
Sbjct:    3 EVGHTLGLRHNFRGSTGPTLAQLQSPKYTSKFGLTTSVMDYLPINIVSAKLRAAAGVGPIGPDHNYFTPVLGSYDMWAIEYGYMDV 88          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A3L7V880_9BACT (DUF5117 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7V880_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 5.320e-22
Identity = 45/81 (55.56%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEPVYFTPKVGAYDMWAIKYGYMEVEG 243
            +VGHTLGLRHNF+GS + SLAD+ D SKTS+ G ++SVMDY+P+N V+   +G  +  Y+T K+G YD+WAI+YGY ++ G
Sbjct:  511 EVGHTLGLRHNFKGSIRKSLADINDVSKTSQSGSSTSVMDYIPVNIVA---KGKTQGDYYTAKIGPYDLWAIEYGYKQLPG 588          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A136KL17_9BACT (Uncharacterized protein n=6 Tax=Armatimonadetes TaxID=67819 RepID=A0A136KL17_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 2.530e-21
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEPVYFTPKVGAYDMWAIKYGYMEVEGEH 249
            +VGHTLGLRHNF  ST+ S+A+L + + TSE G+T+SVMDY P+N V + L+GA     + P++G YDMWAIK+GYME+ G H
Sbjct:  534 EVGHTLGLRHNFIASTRLSVAELANDAITSERGVTASVMDYTPVN-VPAILKGAKN--LYAPRIGDYDMWAIKFGYMEIPGAH 613          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A2G4IWJ4_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2G4IWJ4_9PLAN)

HSP 1 Score: 95.1 bits (235), Expect = 6.420e-21
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEPVYFTPKVGAYDMWAIKYGYMEVEG 243
            +VGHTLGLRHNF+GS + SLAD+ D +KTS+ G +SSVMDY+P+N VS   +G  +  Y+   +G YD+WAI+YGY +V G
Sbjct:  509 EVGHTLGLRHNFKGSARQSLADINDVTKTSKSGASSSVMDYIPVNIVS---KGKTQGDYYAAVLGPYDVWAIEYGYKQVAG 586          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A3L7UKX8_9BACT (DUF5117 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7UKX8_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 1.200e-20
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEPVYFTPKVGAYDMWAIKYGYMEVEG 243
            +VGHTLGLRHNF+GS   SLAD+ D +KTS+ G ++SVMDYLP+N      +G  +  Y+T K+G YD+WAI+YGY  + G
Sbjct:  501 EVGHTLGLRHNFKGSAMKSLADINDVTKTSQTGASTSVMDYLPVNIAP---KGKTQGDYYTAKIGPYDVWAIEYGYKPLSG 578          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A7S1SC00_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SC00_ALECA)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-20
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADE------PVYFTPKVGAYDMWAIKYGYMEVEGE 246
            + GHTLGLRHNFQGS      + QD   T   GL+SSVMDYLP+N  S K   + +      P  FTP +GAYD WAI+YGY  +  E
Sbjct:   18 EFGHTLGLRHNFQGSVALPFEESQDPEYTGVHGLSSSVMDYLPLNIASRKRSASRDGKERGPPHLFTPVIGAYDKWAIRYGYTPIADE 105          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A257TT83_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetia bacterium 21-64-5 TaxID=1970542 RepID=A0A257TT83_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 1.630e-20
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEPVYFTPKVGAYDMWAIKYGYMEVEG 243
            +VGHTLGLRHNF+ S+  SLADL D  KT E GLT SVMDY P+N V   ++  D   Y++  +G YD+WAI+YGY  + G
Sbjct:  469 EVGHTLGLRHNFKSSSMLSLADLNDTDKTKETGLTGSVMDYAPVNIVPKGMKQGD---YYSQTIGPYDLWAIEYGYKPLPG 546          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A517TH62_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium MalM25 TaxID=2527998 RepID=A0A517TH62_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 2.230e-20
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEPVYFTPKVGAYDMWAIKYGYMEVEGE 246
            +VGHTLGLRHNF+ STQ+SL ++QD  KT E GL +SVMDY P+  +  +L+  D   Y+T  +GAYD WAI+YGY  ++ E
Sbjct:  516 EVGHTLGLRHNFKASTQYSLEEMQDTEKTRETGLVASVMDYNPVFLLPERLKQVD---YYTTTIGAYDYWAIEYGYKPLKDE 594          
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Match: A0A7S1TU96_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU96_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.990e-20
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSKLQGADEP-VYFTPKVGAYDMWAIKYGYMEVEGE 246
            +VGHTLGLRHNF+GST+ +   L++     + GLTSSVMDYLP+N  +     A +P   FTP++G YD WAI+YGY  VE E
Sbjct:   37 EVGHTLGLRHNFKGSTERTKEQLRNADYVDKHGLTSSVMDYLPMNVWAEDFDAAVQPQTLFTPRIGEYDKWAIRYGYAPVEDE 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8842.16744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLX5_ECTSI4.380e-3374.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFA7_9STRA5.270e-2461.63DUF4953 domain-containing protein n=1 Tax=Tribonem... [more]
A0A3L7V880_9BACT5.320e-2255.56DUF5117 domain-containing protein n=1 Tax=Planctom... [more]
A0A136KL17_9BACT2.530e-2156.63Uncharacterized protein n=6 Tax=Armatimonadetes Ta... [more]
A0A2G4IWJ4_9PLAN6.420e-2155.56Uncharacterized protein n=2 Tax=Planctomycetes Tax... [more]
A0A3L7UKX8_9BACT1.200e-2054.32DUF5117 domain-containing protein n=1 Tax=Planctom... [more]
A0A7S1SC00_ALECA1.350e-2050.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A257TT83_9BACT1.630e-2054.32Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517TH62_9BACT2.230e-2053.66Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7S1TU96_9STRA6.990e-2053.01Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8842contigH-paniculata_contig8842:105..1223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog2880.D8LLX5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Met-zincin
EggNOG OGs2CXMF@1,2RYE2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931108.034238-CDS-H-paniculata_contig8842:104..2501622931108.034238-CDS-H-paniculata_contig8842:104..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8842 105..250 +
1691481593.8270574-CDS-H-paniculata_contig8842:104..2501691481593.8270574-CDS-H-paniculata_contig8842:104..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8842 105..250 +
1622931108.0632386-CDS-H-paniculata_contig8842:1111..12231622931108.0632386-CDS-H-paniculata_contig8842:1111..1223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8842 1112..1223 +
1691481593.8418138-CDS-H-paniculata_contig8842:1111..12231691481593.8418138-CDS-H-paniculata_contig8842:1111..1223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8842 1112..1223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8842.16744.1prot_H-paniculata_contig8842.16744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8842 105..1223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8842.16744.1

>prot_H-paniculata_contig8842.16744.1 ID=prot_H-paniculata_contig8842.16744.1|Name=mRNA_H-paniculata_contig8842.16744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
QVGHTLGLRHNFQGSTQFSLADLQDGSKTSEEGLTSSVMDYLPINFVSSK
LQGADEPVYFTPKVGAYDMWAIKYGYMEVEGEHVLE
back to top

mRNA from alignment at H-paniculata_contig8842:105..1223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8842.16744.1 ID=mRNA_H-paniculata_contig8842.16744.1|Name=mRNA_H-paniculata_contig8842.16744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-paniculata_contig8842:105..1223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTGGGCATACGCTAGGGCTTCGGCACAATTTCCAGGGCTCGACTCA ATTTTCTCTTGCAGATCTCCAGGACGGGTCGAAAACTTCGGAGGAAGGGC TGACATCCTCGGTTATGGACTACCTGCCAATCAACTTCGTGTCGAGGTGG GGCTGGGGCTCGTGTAATCTCTGTATGGGCTTGTTTTCCTCTCGATTCGG GTGTCTAGATTTGCCGTTCGTCCTCTAGTCGTTTTTGTTGACTTGGTGTT CCTCTGAACTTGGCGTGTCTATTACTATTAGTTGTACTATAACGAAATAT TTAAGTTTGTGATGTACAAATATTTAAAGCTGGTCGATTGCCTCTCAATG CGGGGTTGATGAGGGCGGTTGTATGCCGCAAATAATTTCGTTCTCGGTCT AGAATTACCACAGTGCAGGAGTGTATACTCTCGAGCGAAATGAGTTTATC TTGCGCGAAGAAACTCCGAGATTTGGGATTCATTTTGGCGTTTCTTTGTA CCTACTGTTTCGACTTGATATTTGATATGTTCTCCCCCCTGGCATGTCGA AGTTAACAACATAACTTCTTCAGGGTGAGAGGTACTAGCTCTGTAAATTT GTCACGGTGTTATTTCGGTCGGCGGGGAATGAGCGGGAGTGATAAATTTG ATTGGTATATGCAGGGGGAAAGGATCTCATCGAATAACACGAAGCGAAAT ACAGGAACGTTTTGAGAGAAACTTTCCTTGGGGATAAGGCTGGTGTTTCA GTGCGAGTCTATTTCGTCATCCTCCAAAAAGCGTTTAAGAATATACTATA TTTCATAGCTCCAAAGTATGTTCAGTATTGCTGCAGCAGGATCGTACTTT ATCCGCCGTTAAATACCTCAGCTATTTTTCAATCATATTGAGTTTCATTC CGTATTCGGAGAGCGTGCCAATATACTCGATTTCAAATCGTCTATGTTTG AGGCTTGGAGACCATGACTCTCTGTGTGAACTCCTGTGTAAACTCTGTGG GCATCAGCAAGCTCCAAGGCGCCGACGAGCCCGTGTACTTTACCCCCAAG GTCGGTGCGTATGACATGTGGGCCATTAAGTACGGCTACATGGAGGTGGA GGGAGAGCATGTTCTTGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8842:105..1223+

>mRNA_H-paniculata_contig8842.16744.1 ID=mRNA_H-paniculata_contig8842.16744.1|Name=mRNA_H-paniculata_contig8842.16744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig8842:105..1223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTGGGCATACGCTAGGGCTTCGGCACAATTTCCAGGGCTCGACTCA
ATTTTCTCTTGCAGATCTCCAGGACGGGTCGAAAACTTCGGAGGAAGGGC
TGACATCCTCGGTTATGGACTACCTGCCAATCAACTTCGTGTCGAGCAGG
TTGGGCATACGCTAGGGCTTCGGCACAATTTCCAGGGCTCGACTCAATTT
TCTCTTGCAGATCTCCAGGACGGGTCGAAAACTTCGGAGGAAGGGCTGAC
ATCCTCGGTTATGGACTACCTGCCAATCAACTTCGTGTCGAGCAAGCTCC
AAGGCGCCGACGAGCCCGTGTACTTTACCCCCAAGGTCGGTGCGTATGAC
ATGTGGGCCATTAAGTACGGCTACATGGAGGTGGAGGGAGAGCATGTTCT
TGAACAAGCTCCAAGGCGCCGACGAGCCCGTGTACTTTACCCCCAAGGTC
GGTGCGTATGACATGTGGGCCATTAAGTACGGCTACATGGAGGTGGAGGG
AGAGCATGTTCTTGAA
back to top