mRNA_H-paniculata_contig8807.16719.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8807.16719.1
Unique NamemRNA_H-paniculata_contig8807.16719.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8807.16719.1 vs. uniprot
Match: D8LC50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC50_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.480e-9
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  154 LEDISKDELSALRENILMPRARRSAAIVSQRRTASEIGKFV 276
            LE +SKDELSAL+ NI+ PRARR AAI SQRRTASEIGKFV
Sbjct:   67 LEAVSKDELSALKGNIIYPRARRKAAIASQRRTASEIGKFV 107
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BLAST of mRNA_H-paniculata_contig8807.16719.1 vs. uniprot
Match: A0A6H5J8X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.340e-8
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  154 LEDISKDELSALRENILMPRARRSAAIVSQRRTASEIGKFV 276
            LE +SKDELSAL+ N++ PRARR AAI SQRRTASEIGKFV
Sbjct:  159 LEAVSKDELSALKGNVIYPRARRKAAIASQRRTASEIGKFV 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8807.16719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC50_ECTSI2.480e-980.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8X7_9PHAE1.340e-878.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8807contigH-paniculata_contig8807:326..1527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_004470.1
Exons2
Model size442
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.06622-CDS-H-paniculata_contig8807:325..4971622931104.06622-CDS-H-paniculata_contig8807:325..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8807 326..497 +
1691481592.026369-CDS-H-paniculata_contig8807:325..4971691481592.026369-CDS-H-paniculata_contig8807:325..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8807 326..497 +
1622931104.0834343-CDS-H-paniculata_contig8807:1258..15271622931104.0834343-CDS-H-paniculata_contig8807:1258..1527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8807 1259..1527 +
1691481592.039029-CDS-H-paniculata_contig8807:1258..15271691481592.039029-CDS-H-paniculata_contig8807:1258..1527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8807 1259..1527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8807.16719.1prot_H-paniculata_contig8807.16719.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8807 326..1527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8807.16719.1

>prot_H-paniculata_contig8807.16719.1 ID=prot_H-paniculata_contig8807.16719.1|Name=mRNA_H-paniculata_contig8807.16719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
EPPYTRDEEGGEAVASSNGKGKGKGKGASIVEQRPKKRAKRSKQDDDDDS
HLEDISKDELSALRENILMPRARRSAAIVSQRRTASEIGKFVAAGNDDDD
DSDEDGDVGGGAFGGGGGSGASGGGGGSAGGGLGDDGSDEEAELEF*
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mRNA from alignment at H-paniculata_contig8807:326..1527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8807.16719.1 ID=mRNA_H-paniculata_contig8807.16719.1|Name=mRNA_H-paniculata_contig8807.16719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1202bp|location=Sequence derived from alignment at H-paniculata_contig8807:326..1527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCGCCATACACAAGAGACGAAGAAGGGGGAGAGGCGGTGGCATCAAG
CAACGGCAAGGGCAAGGGCAAGGGAAAGGGGGCGAGCATCGTGGAGCAGC
GGCCTAAGAAGCGAGCGAAGCGAAGCAAGCAAGACGACGACGACGATAGC
CATCTGGAGGACATTTCAAAAGGTGAGTTTGTTGGCCGTGGGTGGGTCAG
TAGGGGGTGGTCCTTCCTGCTCTTGGGGAGTTGTGAGTGTTTCAACGGTG
ATGTGAACATAATTTGTGCGTCTCGACAGGGTTAATAGTCATTATCATGC
GTTGTGCGTGGTACTGTTGCTGCTGTCAGAGTGATGATTGATGTTGATGC
TGCTCGTAAATAGCGGTAGTGAGGTTTTGCTGTTTGGCGGCGGGGAGGGG
GGGATGATGGTCACCTATATATATATATTTTTTTTTGCAAATGGTGTTTT
AACTAAAAAAAAAAAATGCTTTTTTTTGTCTTTTTTTTGTTGTCTTTTCT
TTTTGCTGCCTACTCAATTAAACATGCTAGCTTAGTTCATTTATTGTAAT
TTTTTTTCCCCTTTTTTTTTTTTTACAAATACGTTCACCAGATGTCCTCC
ACCCACACGCAACGACTCCCTCCCTTTTTTTTGAAGTGGTTTGTTATGCT
CTACGCTGTCAAAGAAAACGTGGGAGGCAATGGTTGGTGCCCCTTGAATT
GTTGAAGGAATTTTTGTTGACAGTAAAGGGTTGAATATATATATATTACG
TAATTTGATATTTTGGTATATGTATCTTTGACTCTTTTTTTTCAATCAGT
TTATTTTTTAATACTTTTTTTTTTTATCAAGTCGTCGCTTGTCATAGTGT
AGACGCTGTGCGGCTGGTGAAGCTGTCCTCAAAACCGTACCCCCGTACCC
CCGTACCCCCTCCCCCGCATATACCCCCGCTAGACGAACTGTCCGCTCTG
AGAGAGAACATCCTCATGCCCCGCGCACGGCGCAGCGCCGCGATCGTGTC
ACAACGGCGGACGGCAAGCGAAATCGGAAAGTTCGTTGCGGCGGGAAACG
ACGACGACGATGATTCGGACGAGGACGGTGACGTTGGCGGCGGAGCTTTC
GGAGGGGGCGGGGGCTCAGGTGCCAGCGGGGGTGGCGGCGGGTCGGCGGG
GGGAGGGCTAGGTGATGATGGAAGTGATGAAGAAGCGGAACTCGAGTTCT
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig8807:326..1527+

>mRNA_H-paniculata_contig8807.16719.1 ID=mRNA_H-paniculata_contig8807.16719.1|Name=mRNA_H-paniculata_contig8807.16719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig8807:326..1527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCGCCATACACAAGAGACGAAGAAGGGGGAGAGGCGGTGGCATCAAG
CAACGGCAAGGGCAAGGGCAAGGGAAAGGGGGCGAGCATCGTGGAGCAGC
GGCCTAAGAAGCGAGCGAAGCGAAGCAAGCAAGACGACGACGACGATAGC
CATCTGGAGGACATTTCAAAAGGAACCGCCATACACAAGAGACGAAGAAG
GGGGAGAGGCGGTGGCATCAAGCAACGGCAAGGGCAAGGGCAAGGGAAAG
GGGGCGAGCATCGTGGAGCAGCGGCCTAAGAAGCGAGCGAAGCGAAGCAA
GCAAGACGACGACGACGATAGCCATCTGGAGGACATTTCAAAAGACGAAC
TGTCCGCTCTGAGAGAGAACATCCTCATGCCCCGCGCACGGCGCAGCGCC
GCGATCGTGTCACAACGGCGGACGGCAAGCGAAATCGGAAAGTTCGTTGC
GGCGGGAAACGACGACGACGATGATTCGGACGAGGACGGTGACGTTGGCG
GCGGAGCTTTCGGAGGGGGCGGGGGCTCAGGTGCCAGCGGGGGTGGCGGC
GGGTCGGCGGGGGGAGGGCTAGGTGATGATGGAAGTGATGAAGAAGCGGA
ACTCGAGTTCTGAACGAACTGTCCGCTCTGAGAGAGAACATCCTCATGCC
CCGCGCACGGCGCAGCGCCGCGATCGTGTCACAACGGCGGACGGCAAGCG
AAATCGGAAAGTTCGTTGCGGCGGGAAACGACGACGACGATGATTCGGAC
GAGGACGGTGACGTTGGCGGCGGAGCTTTCGGAGGGGGCGGGGGCTCAGG
TGCCAGCGGGGGTGGCGGCGGGTCGGCGGGGGGAGGGCTAGGTGATGATG
GAAGTGATGAAGAAGCGGAACTCGAGTTCTGA
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