mRNA_H-paniculata_contig8799.16708.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8799.16708.1
Unique NamemRNA_H-paniculata_contig8799.16708.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8799.16708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8799contigH-paniculata_contig8799:5646..8308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8799.16708.1prot_H-paniculata_contig8799.16708.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8799 5646..8308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931102.5316992-CDS-H-paniculata_contig8799:5645..56841622931102.5316992-CDS-H-paniculata_contig8799:5645..5684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 5646..5684 -
1691481591.242176-CDS-H-paniculata_contig8799:5645..56841691481591.242176-CDS-H-paniculata_contig8799:5645..5684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 5646..5684 -
1622931102.551356-CDS-H-paniculata_contig8799:6433..66421622931102.551356-CDS-H-paniculata_contig8799:6433..6642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 6434..6642 -
1691481591.2530506-CDS-H-paniculata_contig8799:6433..66421691481591.2530506-CDS-H-paniculata_contig8799:6433..6642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 6434..6642 -
1622931102.5664494-CDS-H-paniculata_contig8799:8277..83081622931102.5664494-CDS-H-paniculata_contig8799:8277..8308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 8278..8308 -
1691481591.2669926-CDS-H-paniculata_contig8799:8277..83081691481591.2669926-CDS-H-paniculata_contig8799:8277..8308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8799 8278..8308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8799.16708.1

>prot_H-paniculata_contig8799.16708.1 ID=prot_H-paniculata_contig8799.16708.1|Name=mRNA_H-paniculata_contig8799.16708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
ADNGGQVPLTEGLGLQWEHVPHAVAKDRASHFCTGLDTRRSGSCHRQHQQ
RQAQPCEKRTMQLAEQPRGRRRSAAREATQLGDGETTCPPYAT
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mRNA from alignment at H-paniculata_contig8799:5646..8308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8799.16708.1 ID=mRNA_H-paniculata_contig8799.16708.1|Name=mRNA_H-paniculata_contig8799.16708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2663bp|location=Sequence derived from alignment at H-paniculata_contig8799:5646..8308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGACAACGGGGGTCAAGTGCCGCTAACTGGTAAGATAAAAACACGTGG
TACTTGGATGCTGGTGCCAAAGTGTGTGGATCGAGCGCTGGTGCGTTCGC
TACGTCTGGGTTAGGTGTGCCTACTTAATACTGAGGCTGTGTCTGAAATT
GAGAAGTGGCGAGGGATTTTCCAGAGATGCATTAGTGCTCGAAATCGACC
TACTGAGTGGTGAGTGCGGCTGCACTCGCAGGGGGGTTTGCATAGCGAAT
AATGTTGGTCGCTCGCTACGCTCACGTGAAGATTCTTTTTTCAGGAATTA
CTCGAGTAGAGAGTAAAAAACCTGTGCAGAAACGAAGATCATCACCTTAC
ACCTTAAACCTTACACCTTACACCTTACACCTTAAACCTTACACCTTACA
CCTTACACCGTCACGTATAATGTATGTAATAGTAGGGGATATCTGTTCAC
GCCAGCTTCTTGTAGCGCGTGTTCCTCCACATTTCTTCGAACCAACTATT
CTGTTCATTGCTGCGTTGACTGGTGTTTCCTGGCGGGAGGGTGAGCATCA
CCGTTGCCAGGCCGCTACCGAACGATATGTCCAGACCAGTCAATTCATAT
ACCAGGGAGGTGGTTAATCGAAATTCCTATCCGTGGACAGCCGCCGACAG
CCCCCGGAGCTCCCCCCCGAGATAACGCTCCCCCGTGCGGGCACTCCCGG
AGGGAGCGTTTAGAAAAAACGAACGATTTTGCACGAGATTTTTTTTATAG
ATAATATATTTTGAAAAACGACTCAAATTTGTTTTTCCGCCTGAAGGCAA
CAATTAATCCCACCCAAATGTTGCGGCTACAACGGAGTCCGTCAGCGAAT
CTAGAAGATTTATCGGGATAAACTCTTTTTGTCAGGATTTATCAGCGGTT
TCGCCGACACAGCGCTCTATTTATTTCCATTGTTGATAAGTACTGTTGCG
ACCAATGGATGACCACCTTGGGCAATACTGATACATAAATGAAACAATGT
ATTGCTTTGTTTTGCACTATTTTGTGGAATGTACTCCACCACTTCGAAAC
TATAGGTCACTCCTGTGTATCCTCTTTTTTGTATTTTCGCAGAAAGTATG
AAATGAAATAAGAAAAATTGACATTTCGGGTGGAACTGAAGATGCCATTT
TTTCAAGATTCAACATCTCCATGGCGTCGCAAAGGGGAATACCGGATCGA
TTGGAATGTTAGTTTTTGGGGCACACGACAGCTTGGTGTCCTTTGCTTTG
GGGAACGTGTGCCCAAGTGCTTCCGGTGCTTCAATTTGTTGTACATAGTG
GTGGGTACTTGTACAACACTGTTGACCTGTGCTGATTTTTAAGAAGTGTA
CCTTGTGTTTCAATCTTCTTTTGTTTGTTTTGAGGATTGTTTGTGTCTTT
GGTCGCAGGCTCGGTTTTTTTCAATGCTTCATTATTTTCTCCATATTTTC
CCTCAAGTTTACGTATTATTTATTGGAGTCGATCGCATAGTCCAATTAAG
TGCTTGATCGGCTTGACTATTGTGCTAATTTTCATTCACTACCCCACGAA
ACAAACCACAGATGTTCGTGTGTGTGTATCTGTGTTCTGCATCTGTTGTG
GTGTTTATAGTAATTTTCATTTTCTCGTGTGCACGTGCGTGTATGTGTTA
TCCTTGGACGCTCTAGAAGGCTTAGGCTTGCAATGGGAGCATGTGCCGCA
CGCCGTAGCGAAGGACAGGGCTAGCCACTTCTGCACAGGGCTCGACACTC
GGCGATCAGGCAGTTGTCACAGACAACATCAACAACGACAAGCCCAACCG
TGCGAGAAGAGAACCATGCAGCTAGCCGAGCAGCCTCGGGGGCGGCGGCG
GTCAGCAGCAAGGGAAGCGACGCAGGTAAAAAGACACCTACTGTAATGGC
AGTCGTGTAGGACTGTACTGTACTGTACTGTGGTGTTGACCTGGTGTCTG
CTACATTTACTGCTGCAATAAAGTATACCATGTATTGGTATGCTATACGG
ACCTGGGTTGTGCCGTGTTGCGCTGAAAGCTGCTGTGCTCTAGTGGTGTG
TGTGTTGCTGCGCCGGGCTTCATTGCATTGCATTGAACTTTGTGGCATTG
TGTTGTGTTGTTGTACTGTGTTGGGGTTGCACTGCGCTGCATTGTGTTGC
ACACTTTACGTTGCTGTACGGTGCGGTGTGCTGCCGGGCTGTACTTCATT
ATGCTGTATTGCGTTATACTCTGCTGTACTGGATGGCGCTAGGCTATAAT
GTACTGCACTGTACTGTATTATTGCTGCGCTGTACCATGCCGAAGTGCGT
TCTACTACATTGTATTCCATATTATTGGATTGCGATGCGTTATGCTGTGC
TTCATTGTACTGAAATGTACTTTGTCACACTGTGCCATATGGACATGTTC
CAGAGTATCACCAAGGACCCTTGTAATGTATCGTGGTGTACCCAGTAACA
AATCGATGATATGGACACGTACACTTCAATTCGTAACTCCACCTTCGCCT
CTCCAAGCGAGTTAAGATAATGATACTTTATTTGCAGTATCTCTATGTCA
TATTCCTGAATATGTCTCATTATCAGGGGACGCTGATTCAAAATCCCCGT
TTTCCACGCCAACCATAAGGAAAGCTTGGAGACGGAGAGACGACATGCCC
GCCTTATGCCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig8799:5646..8308-

>mRNA_H-paniculata_contig8799.16708.1 ID=mRNA_H-paniculata_contig8799.16708.1|Name=mRNA_H-paniculata_contig8799.16708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig8799:5646..8308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGACAACGGGGGTCAAGTGCCGCTAACTGGCGGACAACGGGGGTCAAG
TGCCGCTAACTGAAGGCTTAGGCTTGCAATGGGAGCATGTGCCGCACGCC
GTAGCGAAGGACAGGGCTAGCCACTTCTGCACAGGGCTCGACACTCGGCG
ATCAGGCAGTTGTCACAGACAACATCAACAACGACAAGCCCAACCGTGCG
AGAAGAGAACCATGCAGCTAGCCGAGCAGCCTCGGGGGCGGCGGCGGTCA
GCAGCAAGGGAAGCGACGCAGAAGGCTTAGGCTTGCAATGGGAGCATGTG
CCGCACGCCGTAGCGAAGGACAGGGCTAGCCACTTCTGCACAGGGCTCGA
CACTCGGCGATCAGGCAGTTGTCACAGACAACATCAACAACGACAAGCCC
AACCGTGCGAGAAGAGAACCATGCAGCTAGCCGAGCAGCCTCGGGGGCGG
CGGCGGTCAGCAGCAAGGGAAGCGACGCAGCTTGGAGACGGAGAGACGAC
ATGCCCGCCTTATGCCACGCTTGGAGACGGAGAGACGACATGCCCGCCTT
ATGCCACG
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