mRNA_H-paniculata_contig8721.16653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8721.16653.1
Unique NamemRNA_H-paniculata_contig8721.16653.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 94.7 bits (234), Expect = 5.450e-20
Identity = 50/133 (37.59%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYR-EFPGVVGRLDKAIYGLVQA 396
            EM  L EN+ W  V+ P  K VV    ++  K+G DGK+++YK RLVA G  Q  G  ++E  +P +   S + ++SLAA  DW+L  +D + A+L   L++ +++++P  +  E   VV RL+K++YGL Q+
Sbjct:  871 EMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQS 1003          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A4S4N6A1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4N6A1_9APHY)

HSP 1 Score: 94.4 bits (233), Expect = 7.120e-20
Identity = 48/132 (36.36%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
            E++  ++ +++T V+RP ++ V+++  ++K K+G DG++EKYK RLVA G  Q++G  + +  +P S  +S +T+L+LA   D E+  +D + A+L   L++ IF+E+P  +++    V  L K+IYGL QA
Sbjct:  300 ELEAFVKAKLYTAVDRPRNRKVIDSKWVFKYKLGPDGQIEKYKARLVAKGFTQVEGLDYNDTFAPVSKFSSIRTLLALADKLDLEVHQMDVKSAFLNGDLEEEIFMEMPPGFKD-DSQVWSLHKSIYGLKQA 430          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A5N6PPX5_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PPX5_9ASTR)

HSP 1 Score: 94.4 bits (233), Expect = 7.440e-20
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYRE--FPGVVGRLDKAIYGLVQA 396
            E+  L +N+ W  V RP +  VV +  L++ K   DG +++YK RLVA G  Q+ G  +    SP   A + + +LSLA + +W+LR +D   A+L   + + +F+E P  +    FP  V  L KAIYGL QA
Sbjct:  915 ELNALYKNDTWVLVPRPATHNVVGSKWLFRTKFRADGSIDRYKARLVAQGYSQVPGLDYSHTFSPVVKATTVRVVLSLAVVNNWKLRQLDVNNAFLHGKITERVFMEQPPGFANPHFPNHVCLLKKAIYGLKQA 1048          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 91.7 bits (226), Expect = 5.070e-19
Identity = 49/132 (37.12%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
            EM   ++  ++ +VE P ++ VV +  +++ K G +GK+EKYK RLVA G  Q+KG  + E  +P +   S +T+LSLAA  D E+  +D + A+L   LD+ I+++ P  +    G+V +L K++Y L QA
Sbjct:   16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQA 147          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 5.640e-19
Identity = 46/132 (34.85%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
            E++  ++ +++T+V +P  + +V+   +Y  K G DG+V KYK RLVA G  QI+G  + E  +P S   S +++L+LAA+ + E+  +D + A+L   L++ I+++ P  ++   G V +L+K++YGL QA
Sbjct:  167 EIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQA 298          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 8.870e-19
Identity = 46/132 (34.85%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
            E++  ++ +++T+V +P  + +V+   +Y  K G DG+V KYK RLVA G  QI+G  + E  +P S   S +++L+LAA+ + E+  +D + A+L   L++ I+++ P  ++   G V +L+K++YGL QA
Sbjct:  991 EIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQA 1122          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 90.1 bits (222), Expect = 2.140e-18
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQAG 399
            E   L++N  +  V+ P  K  ++   +YK K  +  +  +YK RLV  G  Q+ G  FQE  SP    +S + ++S+AA++DW++ H+D + AYL   L++ I+V  P  + E  G V RL KA+YGL QAG
Sbjct:  247 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAG 377          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 90.1 bits (222), Expect = 2.250e-18
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQAG 399
            E   L++N  +  V+ P  K  ++   +YK K  +  +  +YK RLV  G  Q+ G  FQE  SP    +S + ++S+AA++DW++ H+D + AYL   L++ I+V  P  + E  G V RL KA+YGL QAG
Sbjct:  852 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAG 982          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A151R0M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R0M8_CAJCA)

HSP 1 Score: 89.4 bits (220), Expect = 3.410e-18
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVE-YREFPGVVGRLDKAIYGLVQA 396
            E+Q L  N  W  +E P +K  +    +YK K   DG +E+YK RLVA G  QI+G  + +  SP +   + + +L+ AA Q W LR +D   A+L   L + I++ +P   Y++  G++ +L K++YGL QA
Sbjct:  355 EIQALESNHTWVLIELPPNKNAIGCRWVYKIKHRADGSIERYKARLVAKGYTQIEGQDYLDTFSPVAKLTTIRLLLAFAATQQWNLRQLDVNNAFLHGDLHEEIYMILPPGMYQDKQGMLCKLQKSLYGLKQA 487          
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A8J5ZA79_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZA79_9ROSI)

HSP 1 Score: 89.4 bits (220), Expect = 4.200e-18
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYR-EFPGVVGRLDKAIYGLVQA 396
            E++ L EN  W  V  P  K+ +    +YK K   DG +E++K RLV  G RQ  G  FQE  SP +   + +T++S+AA+ DW L  +D   A+LQ  L + +++++P  +R +    + RL K++YGL QA
Sbjct:  889 EIRALEENGTWEVVSLPRGKVPIGCKWVYKVKYQSDGSIERFKARLVGKGYRQRAGLDFQETFSPVAKQVTVRTVISVAAMNDWPLFQMDVYNAFLQGDLYEEVYMDLPEGFRKQGKHKMCRLLKSLYGLKQA 1021          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T5R4_CAJCA5.450e-2037.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A4S4N6A1_9APHY7.120e-2036.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PPX5_9ASTR7.440e-2037.31Integrase catalytic domain-containing protein n=2 ... [more]
A0A2R6NNP3_9APHY5.070e-1937.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4KBB0_9APHY5.640e-1934.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6NZJ8_9APHY8.870e-1934.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5GI29_9HEMI2.140e-1837.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI2.250e-1837.59Integrase catalytic domain-containing protein (Fra... [more]
A0A151R0M8_CAJCA3.410e-1836.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5ZA79_9ROSI4.200e-1836.84Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8721contigH-paniculata_contig8721:6061..6459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.3
Seed ortholog evalue9.5e-12
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size399
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8721.16653.1prot_H-paniculata_contig8721.16653.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8721 6151..6456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.6380968-UTR-H-paniculata_contig8721:6060..61501622931094.6380968-UTR-H-paniculata_contig8721:6060..6150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8721 6061..6150 -
1691481587.5804417-UTR-H-paniculata_contig8721:6060..61501691481587.5804417-UTR-H-paniculata_contig8721:6060..6150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8721 6061..6150 -
1622931094.6864629-UTR-H-paniculata_contig8721:6456..64591622931094.6864629-UTR-H-paniculata_contig8721:6456..6459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8721 6457..6459 -
1691481587.6214707-UTR-H-paniculata_contig8721:6456..64591691481587.6214707-UTR-H-paniculata_contig8721:6456..6459Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8721 6457..6459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931094.6600082-CDS-H-paniculata_contig8721:6150..64561622931094.6600082-CDS-H-paniculata_contig8721:6150..6456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8721 6151..6456 -
1691481587.609334-CDS-H-paniculata_contig8721:6150..64561691481587.609334-CDS-H-paniculata_contig8721:6150..6456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8721 6151..6456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8721.16653.1

>prot_H-paniculata_contig8721.16653.1 ID=prot_H-paniculata_contig8721.16653.1|Name=mRNA_H-paniculata_contig8721.16653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGN
RQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLD
Q*
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mRNA from alignment at H-paniculata_contig8721:6061..6459-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8721.16653.1 ID=mRNA_H-paniculata_contig8721.16653.1|Name=mRNA_H-paniculata_contig8721.16653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig8721:6061..6459- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATGCAAGGCCTCATCGAAAACGAGGTTTGGACGCAGGTGGAGCGCCC GAATAGCAAGCTGGTCGTGAACACGATGATGCTCTACAAAGGGAAAATCG GCAAGGACGGCAAAGTGGAGAAATACAAGTGCCGCCTGGTCGCCCACGGG AACCGTCAGATCAAGGGCGCCCACTTCCAGGAAGCTTCGTCCCCTGCATC CGCAGCGGCCAGCACAAAAACGATTTTGTCGCTTGCGGCAATCCAGGACT GGGAGCTTCGGCACGTCGACTTTGAACAAGCATATCTGCAGGCGCCCCTC GACCAGTAGATTTTCGTCGAAATTCCCGTAGAATATCGGGAATTCCCAGG AGTGGTGGGGCGCCTCGACAAGGCAATCTATGGATTGGTGCAAGCCGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8721:6061..6459-

>mRNA_H-paniculata_contig8721.16653.1 ID=mRNA_H-paniculata_contig8721.16653.1|Name=mRNA_H-paniculata_contig8721.16653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig8721:6061..6459- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCCTCATCGAAAACGAGGTTTGGACGCAGGTGGAGCGCCCGAA
TAGCAAGCTGGTCGTGAACACGATGATGCTCTACAAAGGGAAAATCGGCA
AGGACGGCAAAGTGGAGAAATACAAGTGCCGCCTGGTCGCCCACGGGAAC
CGTCAGATCAAGGGCGCCCACTTCCAGGAAGCTTCGTCCCCTGCATCCGC
AGCGGCCAGCACAAAAACGATTTTGTCGCTTGCGGCAATCCAGGACTGGG
AGCTTCGGCACGTCGACTTTGAACAAGCATATCTGCAGGCGCCCCTCGAC
CAGTAGATGCAAGGCCTCATCGAAAACGAGGTTTGGACGCAGGTGGAGCG
CCCGAATAGCAAGCTGGTCGTGAACACGATGATGCTCTACAAAGGGAAAA
TCGGCAAGGACGGCAAAGTGGAGAAATACAAGTGCCGCCTGGTCGCCCAC
GGGAACCGTCAGATCAAGGGCGCCCACTTCCAGGAAGCTTCGTCCCCTGC
ATCCGCAGCGGCCAGCACAAAAACGATTTTGTCGCTTGCGGCAATCCAGG
ACTGGGAGCTTCGGCACGTCGACTTTGAACAAGCATATCTGCAGGCGCCC
CTCGACCAGTAG
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