mRNA_H-paniculata_contig8721.16653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 94.7 bits (234), Expect = 5.450e-20 Identity = 50/133 (37.59%), Postives = 81/133 (60.90%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYR-EFPGVVGRLDKAIYGLVQA 396
EM L EN+ W V+ P K VV ++ K+G DGK+++YK RLVA G Q G ++E +P + S + ++SLAA DW+L +D + A+L L++ +++++P + E VV RL+K++YGL Q+
Sbjct: 871 EMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQS 1003
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A4S4N6A1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4N6A1_9APHY) HSP 1 Score: 94.4 bits (233), Expect = 7.120e-20 Identity = 48/132 (36.36%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
E++ ++ +++T V+RP ++ V+++ ++K K+G DG++EKYK RLVA G Q++G + + +P S +S +T+L+LA D E+ +D + A+L L++ IF+E+P +++ V L K+IYGL QA
Sbjct: 300 ELEAFVKAKLYTAVDRPRNRKVIDSKWVFKYKLGPDGQIEKYKARLVAKGFTQVEGLDYNDTFAPVSKFSSIRTLLALADKLDLEVHQMDVKSAFLNGDLEEEIFMEMPPGFKD-DSQVWSLHKSIYGLKQA 430
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A5N6PPX5_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PPX5_9ASTR) HSP 1 Score: 94.4 bits (233), Expect = 7.440e-20 Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYRE--FPGVVGRLDKAIYGLVQA 396
E+ L +N+ W V RP + VV + L++ K DG +++YK RLVA G Q+ G + SP A + + +LSLA + +W+LR +D A+L + + +F+E P + FP V L KAIYGL QA
Sbjct: 915 ELNALYKNDTWVLVPRPATHNVVGSKWLFRTKFRADGSIDRYKARLVAQGYSQVPGLDYSHTFSPVVKATTVRVVLSLAVVNNWKLRQLDVNNAFLHGKITERVFMEQPPGFANPHFPNHVCLLKKAIYGLKQA 1048
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 91.7 bits (226), Expect = 5.070e-19 Identity = 49/132 (37.12%), Postives = 81/132 (61.36%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
EM ++ ++ +VE P ++ VV + +++ K G +GK+EKYK RLVA G Q+KG + E +P + S +T+LSLAA D E+ +D + A+L LD+ I+++ P + G+V +L K++Y L QA
Sbjct: 16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQA 147
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY) HSP 1 Score: 91.3 bits (225), Expect = 5.640e-19 Identity = 46/132 (34.85%), Postives = 84/132 (63.64%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
E++ ++ +++T+V +P + +V+ +Y K G DG+V KYK RLVA G QI+G + E +P S S +++L+LAA+ + E+ +D + A+L L++ I+++ P ++ G V +L+K++YGL QA
Sbjct: 167 EIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQA 298
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY) HSP 1 Score: 91.3 bits (225), Expect = 8.870e-19 Identity = 46/132 (34.85%), Postives = 84/132 (63.64%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQA 396
E++ ++ +++T+V +P + +V+ +Y K G DG+V KYK RLVA G QI+G + E +P S S +++L+LAA+ + E+ +D + A+L L++ I+++ P ++ G V +L+K++YGL QA
Sbjct: 991 EIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQA 1122
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 90.1 bits (222), Expect = 2.140e-18 Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQAG 399
E L++N + V+ P K ++ +YK K + + +YK RLV G Q+ G FQE SP +S + ++S+AA++DW++ H+D + AYL L++ I+V P + E G V RL KA+YGL QAG
Sbjct: 247 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAG 377
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 90.1 bits (222), Expect = 2.250e-18 Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYREFPGVVGRLDKAIYGLVQAG 399
E L++N + V+ P K ++ +YK K + + +YK RLV G Q+ G FQE SP +S + ++S+AA++DW++ H+D + AYL L++ I+V P + E G V RL KA+YGL QAG
Sbjct: 852 ERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAG 982
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A151R0M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R0M8_CAJCA) HSP 1 Score: 89.4 bits (220), Expect = 3.410e-18 Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVE-YREFPGVVGRLDKAIYGLVQA 396
E+Q L N W +E P +K + +YK K DG +E+YK RLVA G QI+G + + SP + + + +L+ AA Q W LR +D A+L L + I++ +P Y++ G++ +L K++YGL QA
Sbjct: 355 EIQALESNHTWVLIELPPNKNAIGCRWVYKIKHRADGSIERYKARLVAKGYTQIEGQDYLDTFSPVAKLTTIRLLLAFAATQQWNLRQLDVNNAFLHGDLHEEIYMILPPGMYQDKQGMLCKLQKSLYGLKQA 487
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Match: A0A8J5ZA79_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZA79_9ROSI) HSP 1 Score: 89.4 bits (220), Expect = 4.200e-18 Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 1 EMQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNRQIKGAHFQEASSPASAAASTKTILSLAAIQDWELRHVDFEQAYLQAPLDQ*IFVEIPVEYR-EFPGVVGRLDKAIYGLVQA 396
E++ L EN W V P K+ + +YK K DG +E++K RLV G RQ G FQE SP + + +T++S+AA+ DW L +D A+LQ L + +++++P +R + + RL K++YGL QA
Sbjct: 889 EIRALEENGTWEVVSLPRGKVPIGCKWVYKVKYQSDGSIERFKARLVGKGYRQRAGLDFQETFSPVAKQVTVRTVISVAAMNDWPLFQMDVYNAFLQGDLYEEVYMDLPEGFRKQGKHKMCRLLKSLYGLKQA 1021 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8721.16653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8721.16653.1 >prot_H-paniculata_contig8721.16653.1 ID=prot_H-paniculata_contig8721.16653.1|Name=mRNA_H-paniculata_contig8721.16653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp MQGLIENEVWTQVERPNSKLVVNTMMLYKGKIGKDGKVEKYKCRLVAHGNback to top mRNA from alignment at H-paniculata_contig8721:6061..6459- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8721.16653.1 ID=mRNA_H-paniculata_contig8721.16653.1|Name=mRNA_H-paniculata_contig8721.16653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig8721:6061..6459- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8721:6061..6459- >mRNA_H-paniculata_contig8721.16653.1 ID=mRNA_H-paniculata_contig8721.16653.1|Name=mRNA_H-paniculata_contig8721.16653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig8721:6061..6459- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |