mRNA_H-paniculata_contig8714.16649.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE) HSP 1 Score: 418 bits (1075), Expect = 7.940e-137 Identity = 232/290 (80.00%), Postives = 251/290 (86.55%), Query Frame = 1
Query: 1 QEDAAGPSDPQAPGAENAADIVTVRPRASQQLVKLVQVLLPPRLPTTAHGVEDGQEGPMTPPAVRALAFVTLGKLCLRDKVLAKNSVNILVRELDTADDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGGVTMEGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVEGGLPIATN 870
+EDAAGPSDPQAPGA + +T RP AS +LV+LVQVLLPPRLPT+AHGVE+G+EGP TP VRALAFVTLGKLCLRDK LAK SVN+ VRELDTA XXXXXXXXXXXXXX DRHV AMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRF+ATLVD D SV+DLG FTLTRPLI K PGLFAQNFVE LFVLNNYSEHPCY AA AGRAD+ GGVTM+GIDLGGD PAQ+ KRM+VY TMLEHMSDEQKITVTAKLAQEVLSA ++GGLP+A +
Sbjct: 151 KEDAAGPSDPQAPGAGKKSAEITARPTASPRLVELVQVLLPPRLPTSAHGVEEGEEGPETPSPVRALAFVTLGKLCLRDKALAKRSVNLFVRELDTAAAPAVXXXXXXXXXXXXXXXXXXXDRHVAAMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFLATLVDSDASVRDLGAFTLTRPLITKTPGLFAQNFVETLFVLNNYSEHPCYAAAAAGRADAGGGVTMDGIDLGGDDPAQIRKRMSVYSTMLEHMSDEQKITVTAKLAQEVLSAVIDGGLPLANS 440
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI) HSP 1 Score: 416 bits (1069), Expect = 2.680e-130 Identity = 230/290 (79.31%), Postives = 252/290 (86.90%), Query Frame = 1
Query: 1 QEDAAGPSDPQAPGAENAADIVTVRPRASQQLVKLVQVLLPPRLPTTAHGVEDGQEGPMTPPAVRALAFVTLGKLCLRDKVLAKNSVNILVRELDTADDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGGVTMEGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVEGGLPIATN 870
+EDAAGPSDPQAPGA + +T RP AS +LV+LVQVLLPPRLPT+AHGVE+G+EGP TP VRALAFVTLGKLCLRDK LAK SVN+ VRELDTA XXXXXXXXXXXXXX DRHV AMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRF+ATLVD D SV+DLG FTLTRPLI K PGLFAQNFVE LFVLNNYSEHPCY AA AGRAD+ GGVTM+GIDLGGD+PAQ+ +R++VY TMLEHMSDEQKITVTAKLAQEVLSA ++GGLP+A +
Sbjct: 995 KEDAAGPSDPQAPGAGKKSAEITARPTASPRLVELVQVLLPPRLPTSAHGVEEGEEGPETPSPVRALAFVTLGKLCLRDKALAKRSVNLFVRELDTAAAPAVXXXXXXXXXXXXXXXXXXXDRHVAAMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFLATLVDSDASVRDLGAFTLTRPLITKTPGLFAQNFVETLFVLNNYSEHPCYAAAAAGRADAGGGVTMDGIDLGGDNPAQIRRRISVYSTMLEHMSDEQKITVTAKLAQEVLSAVIDGGLPLANS 1284
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: W7TNH2_9STRA (Condensin-2 complex subunit d3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNH2_9STRA) HSP 1 Score: 213 bits (543), Expect = 5.010e-59 Identity = 148/297 (49.83%), Postives = 186/297 (62.63%), Query Frame = 1
Query: 22 SDPQAPGAENAADIVTVR-PRASQQLVKLVQVLLPPRLP---TTAHGVEDGQEGPMT--------PPAVRALAFVTLGKLCLRDKVLAKNSVNILVRELDTADDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGGVTMEGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVE-----GGLPI 861
SD APG+ ++ + P A+ L++L+ LLP LP T G E E ++ P +VRA AF+ LGK+CLRDK LAK +VN+ VREL + XXXXXXXXXXXXXX MA CLQD L+RRHA+ LISQLLLQDY+KWRGLLL+R++A LVD D V ++ + + PL+ KNP LF +FVEAL VLN S+H Y AA A A+S VTMEG+DL G PA KRM +Y ML+HMSDEQ+I VTAKL Q++L AA + GG+ I
Sbjct: 664 SDTPAPGSPGGGPLIRIPIPAATTALIRLL--LLPEILPLNDTKKGGEERSVEATVSADRVPVQIPNSVRAHAFLALGKICLRDKALAKENVNVFVRELSLSSSAAIXXXXXXXXXXXXXXXXXXXXXXXXXMARCLQDESSLIRRHALALISQLLLQDYLKWRGLLLHRYLAILVDEDTRVAEVADYMIFSPLLRKNPSLFVNHFVEALVVLNGCSDHDAYKAALAQGAESGTAVTMEGVDLEGSGPA-ANKRMRIYQAMLQHMSDEQRIQVTAKLTQDILGAATDEDGEAGGIKI 957
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A4D9D835_9STRA (Cnd1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D835_9STRA) HSP 1 Score: 209 bits (533), Expect = 3.370e-58 Identity = 147/297 (49.49%), Postives = 185/297 (62.29%), Query Frame = 1
Query: 22 SDPQAPGAENAADIVTVR-PRASQQLVKLVQVLLPPRLP---TTAHGVEDGQEGPMT--------PPAVRALAFVTLGKLCLRDKVLAKNSVNILVRELDTADDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGGVTMEGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVE-----GGLPI 861
SD APG+ ++ + P A+ L++L+ LLP LP T G E E ++ P +VRA AF+ LGK+CLRDK LAK +VN+ VREL + XXXXXXXXXXXXXXX CLQD L+RRHA+ LISQLLLQDY+KWRGLLL+R++A LVD D V ++ + + PL+ KNP LF +FVEAL VLN S+H Y AA A A+S VTMEG+DL G PA KRM +Y ML+HMSDEQ+I VTAKL Q++L AA + GG+ I
Sbjct: 251 SDTPAPGSPGGGPLIRIPIPAATTALIRLL--LLPEILPLNDTKKGGEETSVEATVSADRVPVQIPNSVRAHAFLALGKICLRDKALAKENVNVFVRELSVSSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCLQDESSLIRRHALALISQLLLQDYLKWRGLLLHRYLAILVDEDTRVAEVADYMIFAPLLRKNPSLFVNHFVEALVVLNGCSDHDAYKAALAQGAESGTAVTMEGVDLEGSGPAAT-KRMRIYQAMLQHMSDEQRIQVTAKLTQDILGAATDEDGEAGGIKI 544
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A7S4T9Y0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T9Y0_9STRA) HSP 1 Score: 186 bits (471), Expect = 8.950e-52 Identity = 119/286 (41.61%), Postives = 156/286 (54.55%), Query Frame = 1
Query: 79 RASQQLVKLVQVLLPPRLPTTAHGVEDGQEGPMTPPAVRALAFVTLGKLCLRDKVLAKNSVNILVRELDTA---DDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQDPHP--------------------------LVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDG-GVTMEGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVE 846
++S +LV+L+Q +LPP LP V+D TP RA AF+TLGKLCLRD+ LAK +N+L REL YT +VD++V MA CLQ +VR+HAILL+S L+LQDY+KWRGLL++RF+ VD D SV L TL PL+++ LF NFVE+LFVLN + HP Y AA A + G V EGI+L G KR+ +Y ML HM+DE+KI +TA+LA+ VL A+E
Sbjct: 4 QSSNRLVQLIQTMLPPTLPK----VDDASVERRTPKTARAYAFITLGKLCLRDESLAKECLNLLARELHQNIENSSPSIQSNALLVMGDLCVKYTNLVDKYVPVMAMCLQSGESSSENFNLDMTTCTYATIPGVPGSSSSMVRKHAILLLSSLILQDYIKWRGLLVHRFLVAYVDDDESVSKLAEMTLCGPLLSRQRNLFFNNFVESLFVLNRCTAHPIYAAAEANGDNGAGLAVGFEGINLSGMYGRM--KRLNIYRMMLNHMTDEEKIGITARLAKVVLGGALE 283
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A7S1ZLL9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLL9_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.840e-49 Identity = 119/286 (41.61%), Postives = 156/286 (54.55%), Query Frame = 1
Query: 79 RASQQLVKLVQVLLPPRLPTTAHGVEDGQEGPMTPPAVRALAFVTLGKLCLRDKVLAKNSVNILVRELDTA---DDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQDPHP--------------------------LVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDG-GVTMEGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVE 846
++S +LV+L+Q +LPP LP V+D TP RA AF+TLGKLCLRD+ LAK +N+L REL YT +VD++V MA CLQ +VR+HAILL+S L+LQDY+KWRGLL++RF+ VD D SV L TL PL+++ LF NFVE+LFVLN + HP Y AA A + G V EGI+L G KR+ +Y ML HM+DE+KI +TA+LA+ VL A+E
Sbjct: 553 QSSNRLVQLIQTMLPPTLPK----VDDASVERRTPKTARAYAFITLGKLCLRDESLAKECLNLLARELHQNIENSSPSIQSNALLVMGDLCVKYTNLVDKYVPVMAMCLQSGESSSENFNLDMTTCTYATIPGVPGSSSSMVRKHAILLLSSLILQDYIKWRGLLVHRFLVAYVDDDESVSKLAEMTLCGPLLSRQRNLFFNNFVESLFVLNRCTAHPIYAAAEANGDNGAGLAVGFEGINLSGMYGRM--KRLNIYRMMLNHMTDEEKIGITARLAKVVLGGALE 832
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A7S0PWK8_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWK8_9STRA) HSP 1 Score: 182 bits (461), Expect = 2.410e-49 Identity = 120/280 (42.86%), Postives = 156/280 (55.71%), Query Frame = 1
Query: 61 IVTVRPRASQQLVKLVQVLLPPRLPTTAHGVEDGQEGPMTPPAVRALAFVTLGKLCLRDKVLAKNSVNILVREL-DTADDXXXXXXXXXXXXXXXXX--YTAMVDRHVGAMAACLQDPHP-------------LVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGGVTM--EGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVE 846
I + R S L+ L Q +L LP D + +TP A RA AF+ LGKLCLRD+ LAKN +NIL REL DD YT +VDR++ MAACLQ + LVR+H +L++S LLLQDY+KWRGLL +RF+ D D V L TL PL+ + P LF NFVE+LFVLN S HP Y AA A D+ G+ + +GI+L G S R+ +Y ML +MSDE+KI VTA++A+E+L A+E
Sbjct: 159 IAGIYERPSNLLLNLSQSMLSKYLPKNDS---DHSKQRLTPDAARAHAFIALGKLCLRDESLAKNCLNILARELHQNMDDMSPSVQSNALLVLGDLCVKYTNLVDRYLPVMAACLQSGNASSDSSAASSQGTALVRKHGVLMLSTLLLQDYIKWRGLLFHRFLVASADKDEGVAKLAEMTLCGPLLGRYPKLFFNNFVESLFVLNRCSAHPIYAAA-ASTGDNGAGIAVGFDGINLHGSSGRN--SRIQMYKLMLSNMSDEEKIGVTARIAKEILGGALE 432
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A1Z5KQ42_FISSO (Condensin-2 complex subunit D3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ42_FISSO) HSP 1 Score: 176 bits (445), Expect = 6.470e-46 Identity = 112/275 (40.73%), Postives = 154/275 (56.00%), Query Frame = 1
Query: 94 LVKLVQVLLPPRLPTTAHGVEDGQEGPMTPPAVRALAFVTLGKLCLRDKVLAKNSVNILVRELDT---ADDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQ---------------DPHP-LVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGG-VTMEGIDLGGDSPAQVGK--RMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVEGG 852
L +L+Q LP H V G G TP ++RA A++ +GK+CLRD+ L K S+NIL REL YT+MVDR++ MAAC+Q +P +VR+HA+ +++ LLLQDY+KWRGLL YRF+ VD D V +L L PLI K P LF+ NFVEA+FVLN + HP Y AA A G + EGI L G+ VG+ RM +Y +L +SDE+K+ +TA++ +EVL +A++GG
Sbjct: 998 LARLIQAFLP-------HHVA-GTSGVPTPESLRAHAYLAVGKICLRDETLCKQSLNILARELHENMQQGSWRVQSNALLVLSDLCVQYTSMVDRYLPVMAACMQAGLKDLSGSVLNVAVEPDSAIVRKHAVTVLASLLLQDYIKWRGLLFYRFLVATVDEDEEVANLAEMLLCGPLITKQPRLFSNNFVEAIFVLNRCTAHPIYLAATANDDQGSGAFIGFEGIYLSGE----VGRARRMQIYQLLLSRVSDEEKLGLTARITKEVLGSALKGG 1260
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A1S3I599_LINUN (condensin-2 complex subunit D3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I599_LINUN) HSP 1 Score: 173 bits (438), Expect = 5.640e-45 Identity = 93/231 (40.26%), Postives = 138/231 (59.74%), Query Frame = 1
Query: 187 AVRALAFVTLGKLCLRDKVLAKNSVNILVRELDTADDXXXXXXXXXXXXXXXXXYTAMVDRHVGAMAACLQDPHPLVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGGVTMEGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQKITVTAKLAQEVLSAAVEGGLPIATNSSA 879
++RA AFVTLGKLCL+++ +AK + + REL+T DD YT +VDR+VG +AACL+D +PL+R+ + L+++LL +D++KW+G L +RF+ +VD D +K F L L+ +NPG+F Q+FVE +F N Y H Y + TM L G A+ KRM +Y MLEHMSDE + +TAK+ QE+L V+G +P+ ++SA
Sbjct: 939 SIRAHAFVTLGKLCLQNEDIAKKCIAAMARELETCDDPAVRNNVVVIMCDLCIRYTTLVDRYVGNIAACLKDENPLIRKQTLTLLTRLLQEDFLKWKGSLFFRFITAVVDKDPDIKTFAEFCLVHLLLQRNPGMFNQHFVECIFHFNAYEGHNVYNKFSQSERER----TM--FSLKGKDNAE--KRMYMYRFMLEHMSDEHRFQLTAKICQEILGGLVDGVMPLDPDTSA 1161
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Match: A0A7S0L0J3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0L0J3_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.600e-44 Identity = 111/263 (42.21%), Postives = 142/263 (53.99%), Query Frame = 1
Query: 61 IVTVRPRASQQLVKLVQVLLPPRLPTTAHGVEDGQEGPMTPPAVRALAFVTLGKLCLRDKVLAKNSVNILVREL-DTADDXXXXXXXXXXXXXXXXX--YTAMVDRHVGAMAACLQDPHP-------------LVRRHAILLISQLLLQDYVKWRGLLLYRFVATLVDVDVSVKDLGFFTLTRPLINKNPGLFAQNFVEALFVLNNYSEHPCYTAAGAGRADSDGGVTM--EGIDLGGDSPAQVGKRMAVYLTMLEHMSDEQK 795
I + R S L+ L Q +L LP D + +TP A RA AF+ LGKLCLRD+ LAKN +NIL REL DD YT +VDR++ MAACLQ + LVR+H +L++S LLLQDY+KWRGLL +RF+ D D V L TL PL+ + P LF NFVE+LFVLN S HP Y AA A D+ G+ + +GI+L G S R+ +Y ML +MSDE+K
Sbjct: 159 IAGIYERPSNLLLNLSQSMLSKYLPKNDS---DHSKQRLTPDAARAHAFIALGKLCLRDESLAKNCLNILARELHQNMDDMSPSVQSNALLVLGDLCVKYTNLVDRYLPVMAACLQSGNASSDSSAASSQGTALVRKHGVLMLSTLLLQDYIKWRGLLFHRFLVASADKDEGVAKLAEMTLCGPLLGRYPKLFFNNFVESLFVLNRCSAHPIYAAA-ASTGDNGAGIAVGFDGINLHGSSGRN--SRIQMYKLMLSNMSDEEK 415 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8714.16649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8714.16649.1 >prot_H-paniculata_contig8714.16649.1 ID=prot_H-paniculata_contig8714.16649.1|Name=mRNA_H-paniculata_contig8714.16649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=294bp QEDAAGPSDPQAPGAENAADIVTVRPRASQQLVKLVQVLLPPRLPTTAHGback to top mRNA from alignment at H-paniculata_contig8714:985..8269- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8714.16649.1 ID=mRNA_H-paniculata_contig8714.16649.1|Name=mRNA_H-paniculata_contig8714.16649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7285bp|location=Sequence derived from alignment at H-paniculata_contig8714:985..8269- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8714:985..8269- >mRNA_H-paniculata_contig8714.16649.1 ID=mRNA_H-paniculata_contig8714.16649.1|Name=mRNA_H-paniculata_contig8714.16649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig8714:985..8269- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |