mRNA_H-paniculata_contig871.16645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig871.16645.1
Unique NamemRNA_H-paniculata_contig871.16645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig871.16645.1 vs. uniprot
Match: A0A6H5L446_9PHAE (UDENN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L446_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.710e-10
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 1 
Query: 1309 WEGLKLKHPLTRDEKEQTFMEFAVVGVGEEVLSGARPLQNWGQDTEVISRFPSADRDVDAGGG 1497
            WEGL L  PLT DEK  TFMEFAVVGV    LSG +PL+ WGQ  EV+S FP  + D  +G G
Sbjct:   29 WEGLTLTPPLTGDEKNLTFMEFAVVGVSPSTLSGTQPLEPWGQAPEVLSGFPVTEGDDASGRG 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig871.16645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L446_9PHAE6.710e-1058.73UDENN domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig871contigH-paniculata_contig871:2161..5943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue7.8e-20
Seed eggNOG ortholog2880.D7FZZ2
KEGG koko:K20161
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons4
Model size1503
Cds size1251
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig871.16645.1prot_H-paniculata_contig871.16645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig871 2161..5691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.4174228-CDS-H-paniculata_contig871:2160..23041622931093.4174228-CDS-H-paniculata_contig871:2160..2304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 2161..2304 -
1691481586.9534633-CDS-H-paniculata_contig871:2160..23041691481586.9534633-CDS-H-paniculata_contig871:2160..2304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 2161..2304 -
1622931093.4320748-CDS-H-paniculata_contig871:3051..32591622931093.4320748-CDS-H-paniculata_contig871:3051..3259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 3052..3259 -
1691481586.9637806-CDS-H-paniculata_contig871:3051..32591691481586.9637806-CDS-H-paniculata_contig871:3051..3259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 3052..3259 -
1622931093.447223-CDS-H-paniculata_contig871:3896..47101622931093.447223-CDS-H-paniculata_contig871:3896..4710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 3897..4710 -
1691481586.9722626-CDS-H-paniculata_contig871:3896..47101691481586.9722626-CDS-H-paniculata_contig871:3896..4710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 3897..4710 -
1622931093.4641745-CDS-H-paniculata_contig871:5606..56911622931093.4641745-CDS-H-paniculata_contig871:5606..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 5607..5691 -
1691481586.9804022-CDS-H-paniculata_contig871:5606..56911691481586.9804022-CDS-H-paniculata_contig871:5606..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig871 5607..5691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.4791505-UTR-H-paniculata_contig871:5691..59431622931093.4791505-UTR-H-paniculata_contig871:5691..5943Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig871 5692..5943 -
1691481586.9894397-UTR-H-paniculata_contig871:5691..59431691481586.9894397-UTR-H-paniculata_contig871:5691..5943Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig871 5692..5943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig871.16645.1

>prot_H-paniculata_contig871.16645.1 ID=prot_H-paniculata_contig871.16645.1|Name=mRNA_H-paniculata_contig871.16645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=417bp
MASGTMASGEPGLQGQQHELSSGLSNEEAGLYMDGLTQTCAALRRRIAEL
ESDNTLLRRANKASTTAAAHPAQACSTLLRATTVSGASSTLPATAAAAAA
PPHQQGKTRRRNSVSVRGKNSDDVNDNANKRGSVLPTVGVTAGDQASSAH
GIGIDTLDSEEGEDDEERMGSGRLHAVGRRYNPAVPVGHDKQQQHNHQHQ
RNSGPITRRSGSVLPSSKLDYDDKMSLLSPSAAGSTDDGDGFVLGRDGLG
VKSREAGCEDVDEWASDDSNGSPEGVVSSPKGRNSRGSLFARIEDLAATR
RLSAVPNRKRYSVGVSRYSLPPSMSPNISPTKSEERYDARSNFLQQYRVG
GVWEGLKLKHPLTRDEKEQTFMEFAVVGVGEEVLSGARPLQNWGQDTEVI
SRFPSADRDVDAGGGDG
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mRNA from alignment at H-paniculata_contig871:2161..5943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig871.16645.1 ID=mRNA_H-paniculata_contig871.16645.1|Name=mRNA_H-paniculata_contig871.16645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3783bp|location=Sequence derived from alignment at H-paniculata_contig871:2161..5943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACGTGGCGAGGGGTCGCTGGTAGAATACCAATCCTCCAGTCGTTCTGT
AGTTTTTTTTATGGAATAGCATCTGAGGTTGGTCGCTTCTAGCAAAAAAC
AGAGATAGAAAAATATACCCTCGACGGGCAGGTACGGGGTAAAGACCAAC
GACAAACAACAATCTCTCTCGGACACAAGGTGTCGAGACCAGCTTGATGA
CGTCTCCATGTTAAAAGGCTTGACACCTTGCTAGTTGCTCAATATCGCTG
ACATGGCGAGTGGCACTATGGCTTCTGGTGAGCCTGGATTGCAGGGCCAA
CAACATGAATTGTCTTCTGGATTGTCCAACGAAGAAGGTGAGCTGCAATC
AGGGAGGGCGCTGGTATTCATCCATCAATTCAAGTCATGATACAGACTAA
ACATGCTGGATGGTGAATGGTCTGTGCATAGATGCAGTCCAAATCTCCAT
CATTTGTGAAACGGTGCCACGATTAGCCCGCAGCCTGCTCAAAGAGCGGA
GGTGATTTTTTAGTGCAGGGAAGAGGTGGTGCTAATTGCTAGCTTGGGCC
AGCTGCTTGCGTGATGACACAGGAAACCTTCGTCGTAACGTGTCGCAAGT
GAGAAATACCGACTACAGCCTACCTGGGACACGAGAGTGGTGAGGGAACG
GGGCCTCCTCTTACGTCCATTCGGCTCGGCTACCAACCCCAACCTGCACG
ACAGTCGATTCACAACCACTTGAGAACGTTGCTTGTGGTTGAATGCTGTG
AATTGCCATGCAAATATGGACACTCGGCAAAACATACAGCGCCCTCTCCT
AGATGTGATGTATGAGTTGGTCCATGAGGAACGCAAGTATTGATGTGACT
GCTCCCTCTCTGGTTACGATGTTTGAGTCCCAACATATTATGCTGTGGGC
GCGGACCTACTTATTTATGATCACGGTCGGTCGTGGTTTGCATCCCTATG
ATGGAGCCTCTATTTGCAAACCTGGAGCTTGTTTGGTAGCCTCACTGGGA
TATAGAGAGTTAAAGGAGAAATACCTATCGCACCATGTCGCACGAAGTTT
CGATGACCAAACTCGAAAAATACAAACTGTATGTACAAACTGCATGTGTA
TGTGCCTCAACTGCTGCCATGTTTCCTTTCCTGCTGGTATGTACATGGAC
TCCAACTCTTAACTCATTCTTGTATCCCTTGCTTTCGCTGCCTCTTTGCG
TGCTCGCGCTGTCCCGATTCCCTATGTCGCCAGCCGGACTATACATGGAC
GGACTGACACAGACATGCGCGGCCCTCCGACGACGCATCGCCGAGTTAGA
ATCCGACAATACTTTGTTGAGGAGGGCCAACAAGGCATCGACGACCGCCG
CCGCCCACCCCGCTCAAGCATGTTCTACCTTACTCAGGGCTACTACCGTC
TCTGGGGCGTCGTCAACGCTCCCCGCCACCGCAGCCGCAGCCGCCGCCCC
TCCCCACCAACAGGGGAAAACTCGGAGGAGAAACTCCGTGTCGGTGCGAG
GAAAAAATAGCGATGACGTGAACGACAACGCCAACAAGCGAGGTAGTGTG
CTACCGACGGTGGGTGTAACTGCGGGGGATCAAGCAAGCTCAGCACACGG
TATTGGAATAGACACCCTAGACTCCGAAGAAGGCGAGGATGACGAGGAAC
GGATGGGTTCGGGCAGGTTACATGCGGTAGGACGACGTTATAACCCGGCG
GTACCCGTTGGACACGACAAGCAGCAGCAGCACAACCACCAACACCAACG
CAACAGCGGCCCCATCACGCGGAGAAGCGGCTCCGTGTTGCCATCGTCCA
AGTTGGATTATGACGATAAGATGTCCCTTTTGTCACCCTCTGCGGCCGGA
TCGACTGATGACGGGGATGGGTTTGTTTTGGGCAGAGACGGTCTCGGAGT
GAAAAGCCGAGAGGCCGGGTGTGAGGACGTGGATGAGTGGGCATCAGACG
ACTCGAATGGAAGCCCGGAAGGCGTCGTATCGTCTCCGAAAGGGCGTAAT
TCTCGCGGCAGCTTGTTTGCTAGGATTGAGGATCTGGCAGCCACGAGGCG
CGTATGTGGTTTTGCTCGCGCTGTTGTGGTTGGTTCATTGAATTCTGGTC
GTTGAACTCTGGTCGTTAAACTCTGGTCGCTGGCAGAGTTTAGTCGTTGG
TGATGTTCCAACTGGGGTAAAGCACAATAATGCGTAGACATTCATGCATG
AATACTTCATACCACGAACAGCAAAATCAAAAGAAACCTAGGCCTGGTCA
TCGTTTCGTGTGCAAGGGATGTTTCTAGCGGAGCTTCTCCTGTTGCGAAC
AAACGCAACAGGAGGCTGTGTTTGACTTTTCTGGCCATTGATAAATATTG
ACGGCCACAGAGTTACTGTAGAGTCTTTTCGTGCAAGCAGATAAATAACA
CAAAGGTCCAAGAATATGGTACCGGTACACAGGCATTATTCGGGATCTTC
TCTTCATAGCGGGAGAAAGCGATAGCAAGCAACGCTGCTGCCAGCACGTG
ACTCAATGTTATCTGGAAACAACAGGTGCAGCAATGAACTCTATCGGAGC
CAGCGTTCATCTTTCTGTCTCCGTGTGCCGTGCTAAACCATTTGCGCGCC
GAATCTCTACGTTCGCTCGACTCTGTTACTCCGTGTTGATTTTCCCACGC
GCATCCCACGGGACCGATTCCTTTGTCCGCGCAGGCGCTTATCAGCCGTC
CCCAACCGTAAGCGTTACTCGGTCGGGGTGTCTCGATATTCGTTGCCTCC
CAGCATGTCTCCGAATATATCTCCGACCAAGTCAGAGGAGCGCTATGACG
CAAGATCCAATTTTCTTCAGCAGTATCGGGTAGGCGGTGTGTGGGAGGGG
TTGAAGCTCAAGCATCCCCTAACGCGGGACGAGAAGGAGCAGGTGGATTG
TGTTTTGGTTTGTTCTTTTTCGGAATGAACAGAATGGTTATCAGTCGCAT
TCCATGGATAACAGTAGCTGGGGAAACGTACGGGGGACAACGGAGAGTGC
ACAGGGTGCTTGGGTTGGCATTTCAATCCCGTGATGTCCTAGTCACGTCT
GTACGTCACATCAGGAGCAGCGCCGTACCTGGTGATGACTAGCTCTTGTC
GTGACTGTCGTCCTACTTTGTCGGAACTGTCGTGACTAACAACATTGGAC
TAGCGGTTGACCAAGGCCAGGAACATGCAGCCAGTGTTTTATCCCCGATA
TTTATAGGTACAGCCCATGAGACACGGTACTGCCACGGCTGGGTAGGATC
GAAGTTCGATGTGACTTGGGGAGGAGAGACCCACAACACTTGGACCCACA
TTTTAAATAGTACCGAGGATGGCTCCCTACCATGACAACGATTACAATGA
TGAGCGTATCAGGTAACCGTCGACATTTGTGTTTTTCGCGCTTGTCAAAA
TTGGTTGCGTTGTCGAAAACCCCGCAAACCCCTCGTGCTCGTCTCCTGCT
GATTGCCCGAACTCCCCGGTCTTCAACCCACATCTCCCCGCTTTCCATTC
ACATCTCCCCGCTTCGCCCCGCCTTAATATCTTCTGCACTGCTTAATCGC
AATTTCACTGCTTCTCTGGTTCTCCTGTGCATCACACCACACCATACGAC
CATTACTTGCACGGCATTGGCGTGGGCGATGATGGGCAGACTTTTATGGA
GTTTGCCGTTGTCGGCGTTGGAGAAGAGGTACTCTCTGGTGCTCGGCCTC
TTCAGAACTGGGGTCAAGATACTGAAGTCATCTCGCGGTTTCCAAGTGCC
GACAGGGACGTCGACGCGGGGGGCGGGGATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig871:2161..5943-

>mRNA_H-paniculata_contig871.16645.1 ID=mRNA_H-paniculata_contig871.16645.1|Name=mRNA_H-paniculata_contig871.16645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at H-paniculata_contig871:2161..5943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGTGGCACTATGGCTTCTGGTGAGCCTGGATTGCAGGGCCAACA
ACATGAATTGTCTTCTGGATTGTCCAACGAAGAAGATGGCGAGTGGCACT
ATGGCTTCTGGTGAGCCTGGATTGCAGGGCCAACAACATGAATTGTCTTC
TGGATTGTCCAACGAAGAAGCCGGACTATACATGGACGGACTGACACAGA
CATGCGCGGCCCTCCGACGACGCATCGCCGAGTTAGAATCCGACAATACT
TTGTTGAGGAGGGCCAACAAGGCATCGACGACCGCCGCCGCCCACCCCGC
TCAAGCATGTTCTACCTTACTCAGGGCTACTACCGTCTCTGGGGCGTCGT
CAACGCTCCCCGCCACCGCAGCCGCAGCCGCCGCCCCTCCCCACCAACAG
GGGAAAACTCGGAGGAGAAACTCCGTGTCGGTGCGAGGAAAAAATAGCGA
TGACGTGAACGACAACGCCAACAAGCGAGGTAGTGTGCTACCGACGGTGG
GTGTAACTGCGGGGGATCAAGCAAGCTCAGCACACGGTATTGGAATAGAC
ACCCTAGACTCCGAAGAAGGCGAGGATGACGAGGAACGGATGGGTTCGGG
CAGGTTACATGCGGTAGGACGACGTTATAACCCGGCGGTACCCGTTGGAC
ACGACAAGCAGCAGCAGCACAACCACCAACACCAACGCAACAGCGGCCCC
ATCACGCGGAGAAGCGGCTCCGTGTTGCCATCGTCCAAGTTGGATTATGA
CGATAAGATGTCCCTTTTGTCACCCTCTGCGGCCGGATCGACTGATGACG
GGGATGGGTTTGTTTTGGGCAGAGACGGTCTCGGAGTGAAAAGCCGAGAG
GCCGGGTGTGAGGACGTGGATGAGTGGGCATCAGACGACTCGAATGGAAG
CCCGGAAGGCGTCGTATCGTCTCCGAAAGGGCGTAATTCTCGCGGCAGCT
TGTTTGCTAGGATTGAGGATCTGGCAGCCACGAGCCGGACTATACATGGA
CGGACTGACACAGACATGCGCGGCCCTCCGACGACGCATCGCCGAGTTAG
AATCCGACAATACTTTGTTGAGGAGGGCCAACAAGGCATCGACGACCGCC
GCCGCCCACCCCGCTCAAGCATGTTCTACCTTACTCAGGGCTACTACCGT
CTCTGGGGCGTCGTCAACGCTCCCCGCCACCGCAGCCGCAGCCGCCGCCC
CTCCCCACCAACAGGGGAAAACTCGGAGGAGAAACTCCGTGTCGGTGCGA
GGAAAAAATAGCGATGACGTGAACGACAACGCCAACAAGCGAGGTAGTGT
GCTACCGACGGTGGGTGTAACTGCGGGGGATCAAGCAAGCTCAGCACACG
GTATTGGAATAGACACCCTAGACTCCGAAGAAGGCGAGGATGACGAGGAA
CGGATGGGTTCGGGCAGGTTACATGCGGTAGGACGACGTTATAACCCGGC
GGTACCCGTTGGACACGACAAGCAGCAGCAGCACAACCACCAACACCAAC
GCAACAGCGGCCCCATCACGCGGAGAAGCGGCTCCGTGTTGCCATCGTCC
AAGTTGGATTATGACGATAAGATGTCCCTTTTGTCACCCTCTGCGGCCGG
ATCGACTGATGACGGGGATGGGTTTGTTTTGGGCAGAGACGGTCTCGGAG
TGAAAAGCCGAGAGGCCGGGTGTGAGGACGTGGATGAGTGGGCATCAGAC
GACTCGAATGGAAGCCCGGAAGGCGTCGTATCGTCTCCGAAAGGGCGTAA
TTCTCGCGGCAGCTTGTTTGCTAGGATTGAGGATCTGGCAGCCACGAGGC
GCTTATCAGCCGTCCCCAACCGTAAGCGTTACTCGGTCGGGGTGTCTCGA
TATTCGTTGCCTCCCAGCATGTCTCCGAATATATCTCCGACCAAGTCAGA
GGAGCGCTATGACGCAAGATCCAATTTTCTTCAGCAGTATCGGGTAGGCG
GTGTGTGGGAGGGGTTGAAGCTCAAGCATCCCCTAACGCGGGACGAGAAG
GAGCAGGCGCTTATCAGCCGTCCCCAACCGTAAGCGTTACTCGGTCGGGG
TGTCTCGATATTCGTTGCCTCCCAGCATGTCTCCGAATATATCTCCGACC
AAGTCAGAGGAGCGCTATGACGCAAGATCCAATTTTCTTCAGCAGTATCG
GGTAGGCGGTGTGTGGGAGGGGTTGAAGCTCAAGCATCCCCTAACGCGGG
ACGAGAAGGAGCAGACTTTTATGGAGTTTGCCGTTGTCGGCGTTGGAGAA
GAGGTACTCTCTGGTGCTCGGCCTCTTCAGAACTGGGGTCAAGATACTGA
AGTCATCTCGCGGTTTCCAAGTGCCGACAGGGACGTCGACGCGGGGGGCG
GGGATGGCACTTTTATGGAGTTTGCCGTTGTCGGCGTTGGAGAAGAGGTA
CTCTCTGGTGCTCGGCCTCTTCAGAACTGGGGTCAAGATACTGAAGTCAT
CTCGCGGTTTCCAAGTGCCGACAGGGACGTCGACGCGGGGGGCGGGGATG
GC
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