mRNA_H-paniculata_contig8709.16643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8709.16643.1
Unique NamemRNA_H-paniculata_contig8709.16643.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8709.16643.1 vs. uniprot
Match: D7FWI2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWI2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 7.170e-10
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   16 EDNLNKRKKGGGAVAGA--GAEGGAADGDEGVKRQRRAGFEGKKQDFINKEKPSRSFGKDAGGRG 204
            E+NLN+RKKGG AV      A GG A   +G KRQRRAGFEGKKQDFINKE+PS++ G+  GG G
Sbjct:  488 EENLNRRKKGGPAVGETDKAASGGDAASGQGGKRQRRAGFEGKKQDFINKERPSKA-GEQGGGGG 551
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8709.16643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWI2_ECTSI7.170e-1063.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8709contigH-paniculata_contig8709:7823..8951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue5e-09
Seed eggNOG ortholog2880.D7FWI2
Preferred nameSURF6
KEGG koko:K10848
KEGG Pathwayko03420,ko03460,map03420,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0001652,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015934,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044452,GO:0044464,GO:0065003,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG2885@1,KOG2885@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size208
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.3667848-CDS-H-paniculata_contig8709:7822..79301622931093.3667848-CDS-H-paniculata_contig8709:7822..7930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8709 7823..7930 +
1691481586.932326-CDS-H-paniculata_contig8709:7822..79301691481586.932326-CDS-H-paniculata_contig8709:7822..7930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8709 7823..7930 +
1622931093.3796473-CDS-H-paniculata_contig8709:8853..89491622931093.3796473-CDS-H-paniculata_contig8709:8853..8949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8709 8854..8949 +
1691481586.9439628-CDS-H-paniculata_contig8709:8853..89491691481586.9439628-CDS-H-paniculata_contig8709:8853..8949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8709 8854..8949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8709.16643.1prot_H-paniculata_contig8709.16643.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8709 7823..8949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8709.16643.1

>prot_H-paniculata_contig8709.16643.1 ID=prot_H-paniculata_contig8709.16643.1|Name=mRNA_H-paniculata_contig8709.16643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
RQAKREDNLNKRKKGGGAVAGAGAEGGAADGDEGVKRQRRAGFEGKKQDF
INKEKPSRSFGKDAGGRG
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mRNA from alignment at H-paniculata_contig8709:7823..8951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8709.16643.1 ID=mRNA_H-paniculata_contig8709.16643.1|Name=mRNA_H-paniculata_contig8709.16643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-paniculata_contig8709:7823..8951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAGGCCAAGCGGGAGGATAATCTCAATAAACGGAAAAAGGGTGGGGG
GGCTGTTGCTGGAGCTGGGGCGGAAGGGGGAGCTGCGGATGGTGATGAGG
GGGTGAAGGTAAGAGTGAGAAAGTAGATGGGAGGGGTATTTTTCTTGTCT
TTGGCAGGGTGTAATCACAGCATGTGAAATTATCTAGTTTTTTGCTTATT
GTGTATGCCATTTAAGTTTGAGGTTAGCTGCATAGCCTTAACGTAGGTAG
GGTGTAGTTAGTATGTGAGCACAGCTACAGTTGCCCTATTTTGTTCAATT
TTGCTGATGAGTGAGCACAGCTGGAGATTCAAGTCATCTGCATATCCCAT
GGTTGATGCGTGTGACCCCGAGGCGGTTGGCAAATTGGGTTGCTGGATTG
GAAGTTGATTTGCGAGACGTGACTGTTGGAGCCCATGTGTCGTGAGACTC
GTGTGTTAACTCTTGAGGATGTACTGGGTGATATCAACAGCCAGCAGCAG
TTCTAAATGTTTTTGTGGCGTCCGAAACTGCTATGGCTGCTGTCGACGTT
GCATCTCGTATCTTGGCGTGTACTCTGCGGTACGTTAGTGTGGTGACGAT
TCATCTGATGCAATGGGTTCATGACATGTGTGTTGGGATTAAAGGTAATG
ACGCCGTAGACGTTGTTGCCTAGCCTGTGCTGCATTGCAAGCCAACTCCG
TGGTATTACGTTTGGCTGATGATTTGAACATTTCGTGTACCGCAACACAA
CATCTAAAGACCTGTAACTTCATGTTGTCTTTTTCATGTGTACCGACTGA
CTCGAGCCACCCTTTCCGTATTGTTGGCCCCGTTAGGGTGTTTCGCATTC
GGTTTTGATCGTTAATATATATATACCAAGCCTTCAAATTCCTATAGCTG
TACCGAAACGTTGAGGCTTTCGTCTGCTTAAACAATTCTCTGATTTTGTG
TAAATTTTGCTCATAACTGCGTCGAACTTCGCCCGCTTTTTTCCCCGTTG
CACTCTTCCGTTTGTTTCATCGGTACGGCAGCGCCAAAGACGCGCCGGAT
TCGAGGGTAAAAAGCAAGACTTCATCAACAAGGAAAAACCCAGCAGAAGC
TTCGGCAAAGATGCCGGAGGGAGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8709:7823..8951+

>mRNA_H-paniculata_contig8709.16643.1 ID=mRNA_H-paniculata_contig8709.16643.1|Name=mRNA_H-paniculata_contig8709.16643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig8709:7823..8951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCAGGCCAAGCGGGAGGATAATCTCAATAAACGGAAAAAGGGTGGGGG
GGCTGTTGCTGGAGCTGGGGCGGAAGGGGGAGCTGCGGATGGTGATGAGG
GGGTGAAGAGGCAGGCCAAGCGGGAGGATAATCTCAATAAACGGAAAAAG
GGTGGGGGGGCTGTTGCTGGAGCTGGGGCGGAAGGGGGAGCTGCGGATGG
TGATGAGGGGGTGAAGCGCCAAAGACGCGCCGGATTCGAGGGTAAAAAGC
AAGACTTCATCAACAAGGAAAAACCCAGCAGAAGCTTCGGCAAAGATGCC
GGAGGGAGAGGGCGCCAAAGACGCGCCGGATTCGAGGGTAAAAAGCAAGA
CTTCATCAACAAGGAAAAACCCAGCAGAAGCTTCGGCAAAGATGCCGGAG
GGAGAGGG
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