mRNA_H-paniculata_contig8701.16639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8701.16639.1
Unique NamemRNA_H-paniculata_contig8701.16639.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8701.16639.1 vs. uniprot
Match: D7FRI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI8_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-6
Identity = 44/104 (42.31%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:   58 HEIDDDTKTAIPFEVTTCSHDANICMYSNEYFFNDVQGSFDTV------PGTALGTGQRVNLPRPEAYT--IGILPTLIEGQWFDVSEVEIYLDVVDADLVIPA 345
            HE DD T+ +I F                     DV+  +DTV      PGTALG GQRVN+P P+A    + +L  L   Q  DVSEVEIYLDV D D V+ A
Sbjct:   62 HESDDATQLSISF---------------------DVEVGYDTVHTDLTSPGTALGAGQRVNMP-PDASGNYLHLLFDLTSDQAIDVSEVEIYLDVDDPDDVVVA 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8701.16639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRI8_ECTSI1.210e-642.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8701contigH-paniculata_contig8701:209..4456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size478
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8701.16639.1prot_H-paniculata_contig8701.16639.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8701 209..4456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.810864-CDS-H-paniculata_contig8701:208..3211622931092.810864-CDS-H-paniculata_contig8701:208..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 209..321 -
1691481586.691102-CDS-H-paniculata_contig8701:208..3211691481586.691102-CDS-H-paniculata_contig8701:208..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 209..321 -
1622931092.8324165-CDS-H-paniculata_contig8701:797..8641622931092.8324165-CDS-H-paniculata_contig8701:797..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 798..864 -
1691481586.7093534-CDS-H-paniculata_contig8701:797..8641691481586.7093534-CDS-H-paniculata_contig8701:797..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 798..864 -
1622931092.8504598-CDS-H-paniculata_contig8701:2489..27341622931092.8504598-CDS-H-paniculata_contig8701:2489..2734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 2490..2734 -
1691481586.7221377-CDS-H-paniculata_contig8701:2489..27341691481586.7221377-CDS-H-paniculata_contig8701:2489..2734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 2490..2734 -
1622931092.8650746-CDS-H-paniculata_contig8701:4404..44561622931092.8650746-CDS-H-paniculata_contig8701:4404..4456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 4405..4456 -
1691481586.7314637-CDS-H-paniculata_contig8701:4404..44561691481586.7314637-CDS-H-paniculata_contig8701:4404..4456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8701 4405..4456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8701.16639.1

>prot_H-paniculata_contig8701.16639.1 ID=prot_H-paniculata_contig8701.16639.1|Name=mRNA_H-paniculata_contig8701.16639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MLFFDLGGSFTVSYIMIYIHEIDDDTKTAIPFEVTTCSHDANICMYSNEY
FFNDVQGSFDTVPGTALGTGQRVNLPRPEAYTIGILPTLIEGQWFDVSEV
EIYLDVVDADLVIPAAASYGIVKADTVATVTVDASKWVLDTSSQGGGCGV
SGCDPMLTR
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mRNA from alignment at H-paniculata_contig8701:209..4456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8701.16639.1 ID=mRNA_H-paniculata_contig8701.16639.1|Name=mRNA_H-paniculata_contig8701.16639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4248bp|location=Sequence derived from alignment at H-paniculata_contig8701:209..4456- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTTTTCGACCTAGGAGGCTCGTTCACGGTCTCTTACATCATGAT
ATGTAAGTCGTATCTCCGTCACGGCACATGGACAACCCGTGATTGGGTTT
ATGGTTGAGAGGGAGGGAAGTGATCGACAGTAGCAGCAGATATGCATATT
TTATTGTCAAAAATATAACGATAACCGTAAAACAAAGCAGAGGCATGCTC
AACATCTCCAAGCTACTGGGTTACTCAAGTCATTATCCAGAAACTGATCA
AATTTGGGGGCCATGGGAATATGCTTCCCCCCGCCCCCCCCTGTACGCTT
AGAAAGGGGAAGATGTGAAGCACAGAAAGTTCACGTTGGGTACCCAACCC
TCGATCAAATCTCCTTGGCTCATCACCAAACCGAGTTCATGGTTTCATAT
AATTCGGTGTTCCTATTTTTCGATATTTTTGGTTTGGTTTGATTCCCGAC
CATGCCGCGAACCTGGTTCTCCCCTGCCGCCCGCCGTACCCCGCCCCCAA
TTTCGGACATGCACATGTATTTTTTCATTTTTGATATGTCGTATGCTGTG
GGGAAATCTTGGAAACGGAAAATAGAGTGAAGAAAAACGGGGGGGAGGGT
CAGCTGCTTGCTATGAACAGGGCATTCGTTGTCGTCGTGCCGCATCTGGT
TGCCCGTGCATGCCACCTGCCCCAGCTCTAAACGAGCTTCCAGCAACTCC
ACGTTGTATTCCAGAACTCCATACCAGAAGAAACGATCGATCTAATGTTG
ACCACTCCGCTCGACCAAAGGTTGGCCACATTGCTAACTATATTCGTAGT
TCCCCCCCGTTCCCCGCACAGATGACATATTTCGTGAGCTGTAGCTGACC
ACTCACATATAAACATGGGGCTGAAGGGATTGTGGAGAAGATCTCATGTT
CGTGCTCGCGGCGCAGATCGTAATTTTTCCCGCTACTATCACACTCCAGG
ATTGCTCAAATTTCATCACCCACAGCATAAGTTGGTTGGTGGATGTGGGG
TTCCGTTGTCTAAGTAAATTCATTGCATGGATAATCCCCGCACGTAACGT
TTTTGTTGAGAATATTTAATGATACACCTGCAGGTAGCTGCAAGGGCGGG
CGCCGGTAGCTGTTAAGCTGACCGAACAAGCACGCTGCGCCGAGGATACA
AACAGTTGATGTTGATTGAAAAGTGCCGCTTGTGGGCTAGTGAAGAAGAG
TAACTCAAGAGGTATCTTACAAGGAGTGAGAGATAGTGCGGCGCACCCCA
TGGTGTATCCGCTCTCTACTAAGCTACGTACACCCATTCTCCCCGTAGAA
GCGCATCGTTTCTACCGTTCCGCGATTTACAGGAACTTCTCGAAGAACTG
TTGGATCAACCTCTTCTACGAGTAGATTTCCCAATATGTGGAAACAGAAA
ACTGACTATGAAACGTCACGAATTGCGCCGTTATTCTGTCGTTACTCCTT
ACAGCATATAATTCCTATCCATCCTCGTATACTGAGTCACAGCAACACTT
ACTTTCAAGACTAGGCAATCATGTATATAGTGCTACACTCGTGATCTTCG
ACAGACAGGTACTACTGCTGCGTAGAGTTCAATACACTCCATGCTACGAA
GTATTCACTACAAAATCATACTTGTCTAGTAACAGTTTTTACTTCTCAAT
ACTGTTTTTTCTGTTCTATATAAATGCGTTTCTTCCTTTTCCGCACACCC
GCCTCGGTACGATTCCTTACAGATATCCACGAGATCGACGACGACACCAA
GACAGCAATTCCGTTTGAGGTGACCACTTGCTCGCACGACGCAAACATAT
GCATGTACTCCAATGAATATTTTTTCAACGATGTACAGGGGAGTTTCGAC
ACTGTGCCGGGAACAGCTCTCGGGACGGGCCAGCGGGTCAACCTTCCAAG
GCCCGAGGCGTACACCATAGGCATTCTTCCGACCCTCATAGAAGGGCAGT
GGTTCGACGTCAGCGAGGTGCGACGTCCCCGTGTGCTCGCAGTACCCCTT
TTTGGTCATGTTCTAATTTTGCTGATAAGGGTAAACAACTGAAATTTGAA
GTCAGCTGCGTAACCTCATGTGGTACCGCTTGTTGATTCACTTCAGCTAA
TAGGTCTAATAAGAAATGCGGTAAGGCACCTCTGTGGTGGTGACAGAGGC
TGACGCTGGTGGCGGTTATGCCAACGAGAAGGAACGCTGTGACGAGGGTA
TAGACGGAGATGATGTTGGAAAGGTGCCACTTTCTGGGCAAGACAAGCTT
TAGACAACGAACGGTGATGTTCGGGCACAAGAGAAGAGGGACAGCAGAGA
AGGCCAGAGGCAGGAACTGATGGGTCCCAAACGCTCATCTGACAGTCCCG
TAACAATCTACGATATAATCCACCGCACCTCCCATTCCACTCATGACATA
TGTATCCAACGATGCTGTTGCAGATGTCGCTTGATCTCAGACAGCACATC
GCGCTACGAAGCGTTGACTACATGAGCTGCAGAGCCTTACTCCTCAACAA
GATCTACACAAGTGGAGATTACAGTCAGCTGCATAACGTCAACATGGGTA
CAACACAGTTATCGTATGAAGGTTAGAGTTGTGGTGTAATTGGCTGGAAG
GTACCCCCCCCCCGTCTCCCCCGGCCCCTACGTACCTCTCGTTTGTGCAT
CGACGATACGTTGATAGTTACCTGTATTCCCGATATGCCGACACATGTTG
TGTGGTAATGGGAAAGAGCACTGAGGCAACTCAACATGTTACCATCATCG
ATACTCATCAGACGTAAAAACCTAGTACGCAGCAGCGGAGATTCGTACCG
GATCACTGAAGTTTATGTTTTCATCCAATAAACCACATCAAGCGTTGACA
AGTTCATCATAAAATATGTCGACCTCTAAATCCGGACATCCCCACACACC
CCATCGCCAACGCCAACGCCCCCTTCACCCTCCCGATCAGGAAGTGTACT
TGCTGCAGGGATGCCTCCAATCGATCCCCTGCTTTCTGTACCACTTTCGG
TCCGCAGGAGTCGGTTACTAACCAACAAGTGCAAGCCTTGAGCGGATATT
ATTCCTGTGGATGATCATGGTTATTGTAATAACAACTTGTAGTAATATTG
GATATTTGCGCCTTTTCTTCTCGTTAATCACGTCCGCTGTAAACGAGGCC
ATTTTTCCCCCCATGTAGTTCCGTTTTTCCCTTTTCCAAAAATAGAAAAT
CGCGATGGCGTGCTCAAAATTAGGAAAATATGAGGAATGTGAAAGCAGCG
GAAAAGGTTTTTACCTCAGCCTTCCGGGGGTTGGAAACAAAAAAAAGTGT
GCGGAAACGTTGTATATTATGTTCTCCTTATTCTATACGTCTGATGCACT
TTGGTCACTGTCGTCAACTTGATCAGCTCGCTATCGTGGTTTCCGTTTTT
TGGAAAATGAAGAACGGAAAGTCGAAACAAAGCACGACCTCGTTTAGAAC
ATTCCTGCTTCGTTGTCATCAGTAGGATAGACTATGTGGATGTACCACCA
GCCTTGACATAAAAAATCACCTACGGGCAGGGTGATGGTGTGTTTCCCTC
CTTCATCGTCATCAGACGAACCCTACGCCATAATCTCAACAGGTGGAAAT
CTACCTGGATGTGGTGGACGCCGACCTTGTCATCCCCGCGGCGGCGTCGT
ACGGCATCGGTAAGGCCCTGCACCACTGATTCTACATAAGATATTACTGG
TAAGGATACCCAATTTAAACTCCGTCTCGGTATGGGCCAGACTAGGTGTA
CCCTATGCTCCTTCGAAAGCGATGAAACACTCGAAATTCGAGTCAATGGA
ACACATAAAACAGCATATTGGTGAAATGGGGACCCAACTTTGAGATGGGA
ACCTTGGGTTATATTGGAAATAGGCTCTTTCCTGGAGATCAATTTCGGAT
CTTCAGGATACAGACTATTTCCAATATAACCCAGGGTCCCTATCTCAAAG
TTGGGTCCCTATTTCACCAATATGCTGTTAGAAGTGATGCTACAAATGCT
ACTGTCTCAATCTCATCCACGCAGACTGTCCCCTCTCCCACCCGAAAAAA
ACGCTCGCATTGATCTCCATGCTGCACCCTCCCATGCTTACACGTATCTT
TCTCCGTGTATCTGGTTCTTCGGGGTGGTGACTAGTGAAAGCTGACACCG
TCGCCACGGTAACGGTCGATGCCTCCAAATGGGTGCTGGACACATCGTCG
CAAGGAGGAGGATGCGGGGTTAGTGGTTGCGACCCCATGTTGACAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8701:209..4456-

>mRNA_H-paniculata_contig8701.16639.1 ID=mRNA_H-paniculata_contig8701.16639.1|Name=mRNA_H-paniculata_contig8701.16639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig8701:209..4456- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTTTTCGACCTAGGAGGCTCGTTCACGGTCTCTTACATCATGAT
ATATGCTGTTTTTCGACCTAGGAGGCTCGTTCACGGTCTCTTACATCATG
ATATATATCCACGAGATCGACGACGACACCAAGACAGCAATTCCGTTTGA
GGTGACCACTTGCTCGCACGACGCAAACATATGCATGTACTCCAATGAAT
ATTTTTTCAACGATGTACAGGGGAGTTTCGACACTGTGCCGGGAACAGCT
CTCGGGACGGGCCAGCGGGTCAACCTTCCAAGGCCCGAGGCGTACACCAT
AGGCATTCTTCCGACCCTCATAGAAGGGCAGTGGTTCGACGTCAGCGAGA
TATCCACGAGATCGACGACGACACCAAGACAGCAATTCCGTTTGAGGTGA
CCACTTGCTCGCACGACGCAAACATATGCATGTACTCCAATGAATATTTT
TTCAACGATGTACAGGGGAGTTTCGACACTGTGCCGGGAACAGCTCTCGG
GACGGGCCAGCGGGTCAACCTTCCAAGGCCCGAGGCGTACACCATAGGCA
TTCTTCCGACCCTCATAGAAGGGCAGTGGTTCGACGTCAGCGAGGTGGAA
ATCTACCTGGATGTGGTGGACGCCGACCTTGTCATCCCCGCGGCGGCGTC
GTACGGCATCGGTGGAAATCTACCTGGATGTGGTGGACGCCGACCTTGTC
ATCCCCGCGGCGGCGTCGTACGGCATCGTGAAAGCTGACACCGTCGCCAC
GGTAACGGTCGATGCCTCCAAATGGGTGCTGGACACATCGTCGCAAGGAG
GAGGATGCGGGGTTAGTGGTTGCGACCCCATGTTGACAAGGTGAAAGCTG
ACACCGTCGCCACGGTAACGGTCGATGCCTCCAAATGGGTGCTGGACACA
TCGTCGCAAGGAGGAGGATGCGGGGTTAGTGGTTGCGACCCCATGTTGAC
AAGG
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