mRNA_H-paniculata_contig87.16635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig87.16635.1 vs. uniprot
Match: D8LJB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB2_ECTSI) HSP 1 Score: 443 bits (1140), Expect = 7.840e-135 Identity = 383/1005 (38.11%), Postives = 488/1005 (48.56%), Query Frame = 3
Query: 3 GMRDAVVAAARHLSAMEELVASQNNTSALLIAHNGLAKLLKGRWPWLVGGVLDAPRLLAQLCSIYGDGLSQLKVALAQADAKRAGGSLPDGSGSGTVAAAAAGEVAHLKKFGKLLATFGARMSCLLRHLGPECAPEDRRQAYILFAQAAAVVYPGF-ESLTSRE--AKNAGSRGSPATPSLARVVADVVYPRAVEALLSAAGPPPCCPGECRCGVEKKTEGGLGSEESPPAPGVAV---------SAESADVENGVGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVGVPSERFSLGAILLLCEAVRC---EETRLSKSVSLRLGEYCRWMLDHLSITFPSWVETAAARNRAGVGGDGSSWSERERVVRALCQEAAAALGCYVSRRAVQGDFEEAQLQMLEGCSCYPHPLCREIWCGALKVFIGRCDAVAQESVVQTFTEAALDPRVSCQGRRRLAHALHALTLPQSSGGLSTSSGNTDVTAGNDTSTAVATVGLLCPSAEALLRRFCLAPLLAVHVSPRSPHGTLTTIGSTNSGGLGEGEERGACALDLLRELRCLLAATDTIAASAAGLSTTVKAGEERGADAALADASTTFAKNVLMAC--LRDDARTGHSSGGAREDSRGNGCYNTAGDHVPGLGGAGQKA---MTAATTFLTASAAAPAAALPSEGGKIMKDAPATRRIWPRELPDVAAAKEIGRSFGAVLMSKRVLEFTRLSERALAASVGLLVKTDTGSLPQLCAWIVESAGEGQVTGAGLLALAKGLSCLG-RQSSPVKA----VGASALETVLTDGFVGLFNAGLWPVTTSAMQALEAMARHADPRTAKLLPKLVPQDRLGAFKARLARRMVTLEGSRPVELTKIREHGILERHILTAAAARASSQLAALPVGEHDQGGRVLKRNQNGSVGGRQRQVVVLREGSDVSAMAGLLSSTIARIEVLSEDAGGGIRITM 2942
G RDAVV AA HL+AME+LV QNNT ALL+AHN LAKLLK WPWLVGGV+DAPRLL++LC IY DGL QLK+ALAQADAK A S + S A AG+ AHLKKFGKLLATFG RM+CLLRHLGPEC P +RR A+ L+A+A A VYPG SL +R+ +A + G V ++YP+AVEA +S PPCC + GV G GS SPP V S + GV XXXXXXXX S V LGA+LLLCE +R + R C W+LDHL+ FP WV++AA AL E +A LG +V RRA+ G+F+EAQ+Q++EGCSC+PHP+CRE+W GALKVF+GRCD+ AQE+ +Q+ T AALDPRVS + RRRL AL A+ + ++G SG+ T G S AV LL P A A L + CL+ L + S + ACALDLLR L S S G + D L AS +FA+ LR +A G G+H PG ++ + A FL AA P + K A E AAA+E+ R G +L S + LSERAL+A L+ + D LPQLC+ + A +G+V G +LALA+GLS +G RQ P K +G + LE G L V A+AR DP LLP+ +P+ RL AFK RL RR V L+G P++L +IRE G+ E +L+AAA LAA KR S G Q + +VL+EG D+SA+AGLL++T+ I +LSE GGG+ +T+
Sbjct: 147 GQRDAVVLAAGHLTAMEQLVTRQNNTPALLMAHNALAKLLKNNWPWLVGGVVDAPRLLSRLCEIYRDGLDQLKIALAQADAKHAA-SGEEHSCVNRSAGGGAGDTAHLKKFGKLLATFGTRMACLLRHLGPECPPRERRAAFRLYAKATASVYPGLLASLRARDFVGDDAATAGG--------VAGCIIYPKAVEAFVSTTDEPPCC----QSGVSATGRGENGSR-SPPTSSRKVGPLVDAGGSSCAAFSSAGGVAERERNLRPSCRCYEGTTTGPLSGRRHDPWEALEALRPTPNRXXXXXXXXIADPSRTSSRSSDASAATDDSRDAVHEPESSVD------PLGAVLLLCEFLRRGYGTAPAAGGARGPRREACCAWVLDHLAALFPGWVDSAAXXXXXXXX-----------XXXALTGEVSATLGVFVCRRAMDGEFQEAQVQLIEGCSCHPHPVCREVWVGALKVFLGRCDSAAQEACIQSLTNAALDPRVSRRCRRRLGRALAAVCVAMTTGVPLADSGSP--TGGPSASAAVP---LLLPRARAGLFQACLSRLRGEQLDEDSSGDSSIRASGGRXXXXXXXXXXXACALDLLRALP-----------SWRSFSGVNGGGHD---DEELTAASASFARTSATTADLLRSEAARG-----------------VRGEHSPGSSLRQREEEDNLVAGARFL--------AARPQQERKQAAGAEVDMG-GEAEGGLGAAAREVARELGGMLTSSGLSG--GLSERALSAITRLVAREDPDRLPQLCSVVAREAVDGRVGGEAVLALAEGLSSVGQRQPLPSKGRAGNIGFNRLEECPPRWVRGTLRFSL--VARRHGSHGNAVARCVDPSITALLPRQIPEHRLAAFKGRLGRRTVYLDGGGPIKLEEIRERGLAETRVLSAAAVA----LAA-------------KRGTTESEG--QTRQIVLKEGGDLSALAGLLANTVTGIRLLSEREGGGVCLTL 1052
BLAST of mRNA_H-paniculata_contig87.16635.1 vs. uniprot
Match: A0A6H5JIM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM5_9PHAE) HSP 1 Score: 327 bits (837), Expect = 1.340e-93 Identity = 244/602 (40.53%), Postives = 303/602 (50.33%), Query Frame = 3
Query: 3 GMRDAVVAAARHLSAMEELVASQNNTSALLIAHNGLAKLLKGRWPWLVGGVLDAPRLLAQLCSIYGDGLSQLKVALAQADAKRAGGSLPDGSGSGTVAAAAAGEVAHLKKFGKLLATFGARMSCLLRHLGPECAPEDRRQAYILFAQAAAVVYPGFESLTSREAKNAGSRGSPATPSLARVVADVVYPRAVEALLSAAGPPPCCPGECRCGVEKKTEGGLGSEESPP-----APGVAVSAESADVENGVGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVGVPSERFSLGAILLLCEAVRC---EETRLSKSVSLRLGEYCRWMLDHLSITFPSWVETAAARNRAGVGGDGSSWSERERVVRALCQEAAAALGCYVSRRAVQGDFEEAQLQMLEGCSCYPHPLCREIWCGALKVFIG----RCDAVAQESVVQTFTEAALDPRVSCQGRRRLAHALHALTLPQSSGGLSTSSGNTDVTAGNDTSTAVATVGLLCPSAEALLRRFCLAPLLAVHVSPRSPHGTLTTIGSTNSGGLGEGEERGACALDLLREL 1772
G RDAVV AA HL+AME+LV QNNT ALL+AHN L+KLLK WPWLVGGV+DAPRLL++LC IY DGL QL +ALAQADAK A S SG+ + A AG+ AHLKKFGKLLATFG RM+CLLRHLGPEC P RR+A+ L+A+A A VYPG L S A++ + T +A + +YP+AVEA LS PPCC + GV G S P +P V S + GR S V LGA+LLLCE +R + R C W+LDHL+ FP WV++AA G GG G + + AL E +A LG V RRA+ G+F+EAQ+Q++EGCSC+PHP+CRE+W GALK CD AQE +Q+ AALDPRVS + RRRL AL A+ + ++G T SG+ AG T++A A LL P A A L + CL+ L + S G + S ACALDLLR L
Sbjct: 141 GQRDAVVLAAGHLTAMEQLVTRQNNTPALLMAHNALSKLLKNNWPWLVGGVVDAPRLLSRLCEIYRDGLGQLDIALAQADAKNAASSEEPRSGNRS-AGGGAGDTAHLKKFGKLLATFGTRMACLLRHLGPECRPRKRREAFRLYAKATASVYPGL--LASLRARDVVGDDATTTGGVAGCI---IYPKAVEAFLSTTDEPPCC----QSGVSAIGHGENASRSPPTNSRKASPLVDAGGSSCAAFSSAGRVAERERNLRRSCRCYEGATTGPLSGQRHDPWEALEALRPPNRPPLITDPTRTSSRSSDSSTATDDSRDAAHDLQ---SSPAVDP----LGAVLLLCEFLRRGYGAAPAAGGARGPRRETCCAWVLDHLAALFPGWVDSAA-----GGGGQGGASA-------ALAGEVSATLGVVVCRRAMDGEFQEAQVQLIEGCSCHPHPVCREVWVGALKGKTDAGWKECDPAAQEVCIQSLANAALDPRVSPRCRRRLGRALAAVCVATTTGAPPTDSGSP---AGGPTASAAAP--LLLPRARAGLFQACLSRLRGEQLDGDSS-GDSSIRASGXXXXXXXXXXXXACALDLLRAL 707 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig87.16635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig87.16635.1 >prot_H-paniculata_contig87.16635.1 ID=prot_H-paniculata_contig87.16635.1|Name=mRNA_H-paniculata_contig87.16635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=982bp MRDAVVAAARHLSAMEELVASQNNTSALLIAHNGLAKLLKGRWPWLVGGVback to top mRNA from alignment at H-paniculata_contig87:24778..32929- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig87.16635.1 ID=mRNA_H-paniculata_contig87.16635.1|Name=mRNA_H-paniculata_contig87.16635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8152bp|location=Sequence derived from alignment at H-paniculata_contig87:24778..32929- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig87:24778..32929- >mRNA_H-paniculata_contig87.16635.1 ID=mRNA_H-paniculata_contig87.16635.1|Name=mRNA_H-paniculata_contig87.16635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5892bp|location=Sequence derived from alignment at H-paniculata_contig87:24778..32929- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |