mRNA_H-paniculata_contig87.16634.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig87.16634.1
Unique NamemRNA_H-paniculata_contig87.16634.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig87.16634.1 vs. uniprot
Match: A0A6H5JMZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMZ4_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.880e-49
Identity = 125/307 (40.72%), Postives = 170/307 (55.37%), Query Frame = 3 
Query:  204 ELFRCEREEDLDGSSCRVDMLPDAGLAEMIYERGFDPEGATRMELMDAAMQLLDYEYATGENLREMEFLPGDDAYAADYEQELAAEQLLKEQEAVELSPKPESEATTTTANIDVADISDNSSVTVDGEGDVGGTMVLGSDE-VGDENGG------EVVDDFGGETGVQE---------------GRIVEGLGSADTVIGYAQELGIEVLKTMKRDLNAVVGLLPDPVAKPIREVASVACDTAVRVVHPALKQAERYTRGFRREAMKSAGRLATRVKKDFGPKALRSIATGFSKAKEGLSKAIQGTRQ 1058
            E FRCE EEDLDGS+CRVDMLPD+ LAEM+YERGFDP+GA R++L+DA MQLLDYEYATGE+LREME++P D + AA      AAE    + E                               ++ E    G     +D   G E+GG      E  DD      ++E               G  V   G + T++GYA  L  EVL+TM+RDLN++VG+LP+P+ +P+RE A+   +TA R V PA+++AERYTRG RR A K+AG+    +K +  P+    ++   S AK  +  AI   ++
Sbjct:   43 EAFRCESEEDLDGSACRVDMLPDSALAEMVYERGFDPDGADRLQLLDAVMQLLDYEYATGEDLREMEYIPDDGSAAA------AAETAAADLEXXXXXXXXXXXXXXXXXXXXXXXXGTRGEEGLEEEHGAAGREDGDADSPAGVESGGVGNDEEEASDDAIAREVIEECTSSSVTSSCPVGGRGEEVAAYGES-TLLGYAHGLATEVLRTMRRDLNSLVGMLPEPLERPVREAAAFVGNTATRFVGPAVQKAERYTRGLRRGAGKTAGKAVMALKDEVLPRVWTGVSRAASNAKRRVEDAIAARKE 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig87.16634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMZ4_9PHAE2.880e-4940.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig87contigH-paniculata_contig87:20997..24617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005440.1
Exons3
Model size1819
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig87.16634.1prot_H-paniculata_contig87.16634.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig87 21020..23913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.8209016-UTR-H-paniculata_contig87:20996..210191622931091.8209016-UTR-H-paniculata_contig87:20996..21019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 20997..21019 +
1691481586.0808628-UTR-H-paniculata_contig87:20996..210191691481586.0808628-UTR-H-paniculata_contig87:20996..21019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 20997..21019 +
1622931091.8815074-UTR-H-paniculata_contig87:23913..246171622931091.8815074-UTR-H-paniculata_contig87:23913..24617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 23914..24617 +
1691481586.1219492-UTR-H-paniculata_contig87:23913..246171691481586.1219492-UTR-H-paniculata_contig87:23913..24617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig87 23914..24617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.8373468-CDS-H-paniculata_contig87:21019..212971622931091.8373468-CDS-H-paniculata_contig87:21019..21297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 21020..21297 +
1691481586.0914125-CDS-H-paniculata_contig87:21019..212971691481586.0914125-CDS-H-paniculata_contig87:21019..21297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 21020..21297 +
1622931091.85303-CDS-H-paniculata_contig87:22624..231591622931091.85303-CDS-H-paniculata_contig87:22624..23159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 22625..23159 +
1691481586.1007895-CDS-H-paniculata_contig87:22624..231591691481586.1007895-CDS-H-paniculata_contig87:22624..23159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 22625..23159 +
1622931091.8661046-CDS-H-paniculata_contig87:23634..239131622931091.8661046-CDS-H-paniculata_contig87:23634..23913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 23635..23913 +
1691481586.1102078-CDS-H-paniculata_contig87:23634..239131691481586.1102078-CDS-H-paniculata_contig87:23634..23913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 23635..23913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig87.16634.1

>prot_H-paniculata_contig87.16634.1 ID=prot_H-paniculata_contig87.16634.1|Name=mRNA_H-paniculata_contig87.16634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MQAGDGYRMERSRFPCGRHPALMSGRYIRTNEKVSLLKVLRVTTGIMAAV
LSSCVPVDGAELFRCEREEDLDGSSCRVDMLPDAGLAEMIYERGFDPEGA
TRMELMDAAMQLLDYEYATGENLREMEFLPGDDAYAADYEQELAAEQLLK
EQEAVELSPKPESEATTTTANIDVADISDNSSVTVDGEGDVGGTMVLGSD
EVGDENGGEVVDDFGGETGVQEGRIVEGLGSADTVIGYAQELGIEVLKTM
KRDLNAVVGLLPDPVAKPIREVASVACDTAVRVVHPALKQAERYTRGFRR
EAMKSAGRLATRVKKDFGPKALRSIATGFSKAKEGLSKAIQGTRQGKDGQ
GESNGGSEPEEDA*
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mRNA from alignment at H-paniculata_contig87:20997..24617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig87.16634.1 ID=mRNA_H-paniculata_contig87.16634.1|Name=mRNA_H-paniculata_contig87.16634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3621bp|location=Sequence derived from alignment at H-paniculata_contig87:20997..24617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGAGTCAAAAGGGCACTCAAATGCAGGCTGGGGACGGCTATCGCATG
GAGCGTTCAAGGTTCCCTTGCGGAAGACATCCAGCTCTCATGAGCGGTAG
ATATATTCGGACTAATGAAAAAGTGTCGCTCTTGAAAGTCTTGAGGGTGA
CGACCGGGATCATGGCGGCGGTATTGTCGAGTTGCGTTCCTGTTGACGGT
GCTGAGCTATTTCGGTGCGAGCGAGAGGAGGATTTAGACGGGTCCTCCTG
TCGAGTGGACATGCTCCCCGATGCAGGCTTGGCAGAGATGATATACGAAA
GGTGCGTGGAGTTGCTGTAGATTTATCGCCATAGCTGGTGGGTTTTTATC
AAGGGGTTCGTTTGGCATGCGTCGGGCATCTCCTTGCCTTGTTTTGTTCA
AAAGTGTGTCATTGTTTCCGGAACGCATGATTTCGTGGAAAGTTGACGTG
CGGTGAGGCTGAACAAGTAGGAACTCCGCCAGGAGAGGTTGCGGCCGTTG
CCTCCAGGAATGCGGATCTTAAGCTGCAGAATTTATCTACGAAGGTTTGT
ATGCACCGGTTTTCCTTTGGAGGATGTGTGCAGTACCAAAGTAAAGCCCT
TGGGCGTGTTGCGCGAGTGTGGTTTAACATGATGCCGGCGCGCCTGAGGT
TTGCCCCCCCCACCCCCGTCCCAGAGAAACAAACGGGACACACCACAGGT
AGCAATAGTCTAGATAGATCTCGCAATAGTTGTCTACCATATCTCCTCAG
GATCCGCACGATTGTTTGTGTGTACTCATCTACACGATTTACCTGCATAT
TCCGCGGTAGGAGGTTGTCGTGATGGAACCCTCAATGTTCTCACGTTCGT
TGCCACGTGTCGATTTTTCTTCCCATTCCTGAGCGAGTGGGGCAAGTCGA
ACGAAGGCCTGGGCCGTTCTGGGCGATGACTTTTATTTATGTCTTGATAT
ACGTGCTAATTTTCTGAGATTATTGGGTGGGCTGTTTGTTTTCGAGCTCT
TCAAGTCTACAGTAACGTGTACAATTATTTATAAGCAGTACGATATGATT
TTGGTGTCGGAAACGATGGTTGCGCTCCTGCCTTCGGTCAAGTCTGTTAA
CCACAACCACACATCTGCTTGCCTAGGAAACTTAGCCACGCAGAGCAATA
GCGGATATATATTTTCGAATGTTGTTCCGCCACGAGCTCCGACGACATCC
TAAGTTTATACGGCATTCAAATTCTGAGAGTAAAACCTGGTACATGATGG
AAGCCGCTGCTATTACAGACGTTTGGTAGAGCCGCTTTTTTCTATCCTAT
TGGAGTGGGAGCGACTACACGGAGCTACCCTCAGCTTCTGTACCACAGGC
AAGCATCGGTTGATTGGATTTAGCCTCATTGAGACTGAAATATGCTGAGA
CGTACACGACTCCACTGCGGTATTGTGCGTGGAGAAGGTGCATGTGGGTG
GAACATCTCTCGAGTGACGTGACAAAACAGCCACCTGCTAGACATGTGGA
CAAGAAAATATGATCCCCTCCACCTCCCCAAATGCTTCATTGCCGTTACG
ACAACGACGGCCTGAGCAAATACACAATCACTGGTCTTCAATAGCAAGTT
TATTATTTTTTTGTTTGTCCCCACCCAGAGGATTTGATCCCGAGGGCGCC
ACCCGCATGGAGCTCATGGATGCGGCGATGCAACTCCTGGACTACGAGTA
CGCCACGGGGGAAAACTTGCGGGAAATGGAGTTCCTCCCAGGAGATGATG
CCTACGCGGCGGATTACGAACAGGAGCTGGCGGCAGAGCAATTGTTGAAA
GAGCAAGAGGCCGTGGAATTGTCCCCGAAACCGGAGTCGGAAGCAACAAC
GACGACGGCGAATATTGATGTTGCGGATATTTCCGATAATTCTTCAGTGA
CGGTTGATGGCGAGGGAGATGTAGGGGGAACCATGGTCCTCGGTAGTGAC
GAGGTTGGAGACGAGAATGGGGGGGAAGTCGTTGACGATTTTGGGGGGGA
GACTGGTGTACAAGAGGGTCGTATCGTGGAGGGGCTAGGGTCGGCCGACA
CTGTGATCGGATATGCGCAGGAGCTCGGCATTGAGGTGTTGAAGACGATG
AAAAGGGATCTGAACGCCGTCGTGGGTCTCTTACCCGACCCTGTTGCAAA
GCCCATAAGAGAGGTGAGCTCATCACCATTGCATCAACATGGCGTATAGT
AGTCGCCCCCTCGTTTTACCTGGCGCAAAAGGAGCTGCGGAGGGACCCTT
GGAGTATTAACTCATGGGCTATTATTCCATTTTAGTGTAAAATTTTGCAA
TGGGGCGCTTTTTGCTGGGTGCGTTGTTCAAGAAGTATTTCCTATTTCAG
TGGAAAATGGATTTGCTCTTCCCATGCGTTTTCCCGTACTTGATGTATAG
AGTTCTCTCTCTTTTATACGAAGCATGTAGGCCACACCCGCCACCGCAGG
GGGTGTAATCAATACATCCCCGTTAACGAGAATGCCGTACACTAGTCGTA
ACTCTACCTTCGCACTCGCCACATTATTTATTCCTTTTTTCTAATAACTC
TGGTTTGTTAATCTTTCGTCTATTGGCTTATCATTTTCGTTTGCATATTC
CACATGACGTGCGGTTGTGTGGCGTTGTACCAACTCAGGTTGCGTCCGTC
GCTTGCGATACCGCGGTGCGGGTTGTCCACCCCGCTCTGAAGCAAGCAGA
GCGTTACACCAGGGGTTTTCGCCGCGAAGCGATGAAGTCGGCGGGGCGAT
TGGCCACAAGGGTCAAGAAGGACTTTGGTCCGAAGGCCTTGAGGAGCATT
GCCACCGGCTTCTCGAAGGCCAAGGAAGGCTTGAGCAAGGCGATACAGGG
AACGAGGCAGGGCAAGGATGGGCAAGGAGAATCGAACGGGGGAAGTGAAC
CAGAGGAAGACGCATAATTTGAAATTTTGAAGGAAACCCGATGGTTCGAA
AATGTTACATCTGTATGAGATGTCTCTTTTTCCTTGCTTGCTGTGTATAT
TACGTTATCTGCCGCCGCGTCCTATGGGAGTTGGACCGCTCGCGACTAGA
ACATTGGCGCGGGTTGTTTTTCAAGTATTCATAAACTAGATACGGAAGCC
GTTCCCAGCTCTCAACACAAAAAAAGTGCCAGGTGTGATGAAAATGCCCG
ATTTTGGTGGGCATTGTGCTATCGCCGCCGGTGACCACAAGTGACTGTAG
TTATTTTGCTGTTGTCTTTCGGGAAACGAGACAACTAGGTGTCGGTGATT
CTATGTGCAGTATTTTGTTTCGCCTCGAGTAAGTTTTAGTGTAACGTGCT
TTTGATGTAACGCAAAAAATGACAATTTCCCTTCACCTCATACACGGAGG
GCAGCGTGTGACAAAATACCCACTGACTATTATTGTCTTGAAAAAGCAAG
TACACCTGAAAAGCATCTACATTCGCATGTGCGTGTGTATGTGTAGGGGG
GGCGCGATGGCTTGTTGGTGGCTGAAAAGAGCCCAACACAGATCCTTCGT
ACCTGCAGCCGGCGTAGAGCTGTCTCCTGGTGTTTTACCCTCTGCAGCAT
CAAAATCCATCGTGTATTTTTTAATATCACAAAGTTCTTGCAGAGATTCT
AGAACAGCGTTGTCGAATTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig87:20997..24617+

>mRNA_H-paniculata_contig87.16634.1 ID=mRNA_H-paniculata_contig87.16634.1|Name=mRNA_H-paniculata_contig87.16634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig87:20997..24617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCTGGGGACGGCTATCGCATGGAGCGTTCAAGGTTCCCTTGCGG
AAGACATCCAGCTCTCATGAGCGGTAGATATATTCGGACTAATGAAAAAG
TGTCGCTCTTGAAAGTCTTGAGGGTGACGACCGGGATCATGGCGGCGGTA
TTGTCGAGTTGCGTTCCTGTTGACGGTGCTGAGCTATTTCGGTGCGAGCG
AGAGGAGGATTTAGACGGGTCCTCCTGTCGAGTGGACATGCTCCCCGATG
CAGGCTTGGCAGAGATGATATACGAAAGATGCAGGCTGGGGACGGCTATC
GCATGGAGCGTTCAAGGTTCCCTTGCGGAAGACATCCAGCTCTCATGAGC
GGTAGATATATTCGGACTAATGAAAAAGTGTCGCTCTTGAAAGTCTTGAG
GGTGACGACCGGGATCATGGCGGCGGTATTGTCGAGTTGCGTTCCTGTTG
ACGGTGCTGAGCTATTTCGGTGCGAGCGAGAGGAGGATTTAGACGGGTCC
TCCTGTCGAGTGGACATGCTCCCCGATGCAGGCTTGGCAGAGATGATATA
CGAAAGAGGATTTGATCCCGAGGGCGCCACCCGCATGGAGCTCATGGATG
CGGCGATGCAACTCCTGGACTACGAGTACGCCACGGGGGAAAACTTGCGG
GAAATGGAGTTCCTCCCAGGAGATGATGCCTACGCGGCGGATTACGAACA
GGAGCTGGCGGCAGAGCAATTGTTGAAAGAGCAAGAGGCCGTGGAATTGT
CCCCGAAACCGGAGTCGGAAGCAACAACGACGACGGCGAATATTGATGTT
GCGGATATTTCCGATAATTCTTCAGTGACGGTTGATGGCGAGGGAGATGT
AGGGGGAACCATGGTCCTCGGTAGTGACGAGGTTGGAGACGAGAATGGGG
GGGAAGTCGTTGACGATTTTGGGGGGGAGACTGGTGTACAAGAGGGTCGT
ATCGTGGAGGGGCTAGGGTCGGCCGACACTGTGATCGGATATGCGCAGGA
GCTCGGCATTGAGGTGTTGAAGACGATGAAAAGGGATCTGAACGCCGTCG
TGGGTCTCTTACCCGACCCTGTTGCAAAGCCCATAAGAGAGAGGATTTGA
TCCCGAGGGCGCCACCCGCATGGAGCTCATGGATGCGGCGATGCAACTCC
TGGACTACGAGTACGCCACGGGGGAAAACTTGCGGGAAATGGAGTTCCTC
CCAGGAGATGATGCCTACGCGGCGGATTACGAACAGGAGCTGGCGGCAGA
GCAATTGTTGAAAGAGCAAGAGGCCGTGGAATTGTCCCCGAAACCGGAGT
CGGAAGCAACAACGACGACGGCGAATATTGATGTTGCGGATATTTCCGAT
AATTCTTCAGTGACGGTTGATGGCGAGGGAGATGTAGGGGGAACCATGGT
CCTCGGTAGTGACGAGGTTGGAGACGAGAATGGGGGGGAAGTCGTTGACG
ATTTTGGGGGGGAGACTGGTGTACAAGAGGGTCGTATCGTGGAGGGGCTA
GGGTCGGCCGACACTGTGATCGGATATGCGCAGGAGCTCGGCATTGAGGT
GTTGAAGACGATGAAAAGGGATCTGAACGCCGTCGTGGGTCTCTTACCCG
ACCCTGTTGCAAAGCCCATAAGAGAGGTTGCGTCCGTCGCTTGCGATACC
GCGGTGCGGGTTGTCCACCCCGCTCTGAAGCAAGCAGAGCGTTACACCAG
GGGTTTTCGCCGCGAAGCGATGAAGTCGGCGGGGCGATTGGCCACAAGGG
TCAAGAAGGACTTTGGTCCGAAGGCCTTGAGGAGCATTGCCACCGGCTTC
TCGAAGGCCAAGGAAGGCTTGAGCAAGGCGATACAGGGAACGAGGCAGGG
CAAGGATGGGCAAGGAGAATCGAACGGGGGAAGTGAACCAGAGGAAGACG
CATAAGTTGCGTCCGTCGCTTGCGATACCGCGGTGCGGGTTGTCCACCCC
GCTCTGAAGCAAGCAGAGCGTTACACCAGGGGTTTTCGCCGCGAAGCGAT
GAAGTCGGCGGGGCGATTGGCCACAAGGGTCAAGAAGGACTTTGGTCCGA
AGGCCTTGAGGAGCATTGCCACCGGCTTCTCGAAGGCCAAGGAAGGCTTG
AGCAAGGCGATACAGGGAACGAGGCAGGGCAAGGATGGGCAAGGAGAATC
GAACGGGGGAAGTGAACCAGAGGAAGACGCATAA
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