mRNA_H-paniculata_contig87.16633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A6H5L888_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L888_9PHAE) HSP 1 Score: 459 bits (1180), Expect = 1.470e-150 Identity = 230/467 (49.25%), Postives = 302/467 (64.67%), Query Frame = 2
Query: 83 TMNATPVS--SAQSDPATLRGVVVSLVVDSTDKVKETMNKTIGAREYFRASDANNKIMHLALDVGGVSMYLEEIGHRVYKGA-DKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKIMPYAMVTDATGYLQFLQDVFGATPSMEPMKQSNGKIMWSQVSINGGNFAVGDQC--DASEGTGAEITIIHTIPKGQAETVCQAFKATGGNILCPPAPMFWGQVWGRCKDAFGQSWGICEPPSGTPPTKEDMAIDVKLGEKYKXXXXXSIEDVPKIYCLGEVRTCLAKSSAVAPLIESLLPAAVAEAGKRGLEIVGPPLSGYYSWDPKEGGETSFTTGPMVAGDSST---EEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPIVLK*T 1459
T +ATP S + P T RG++V ++V+S DK + M K A+EYFR D + KIMHLA+D+GGV++Y+EE+G+++ GA H RLHLN ++P V KLV G+K + + +QFWGA +GV++DPFG IWSVS++TN IED+PKEL KI+P+ V D + Y+ FL D GA P K GKIM +++ INGG +GD C DAS+ T A +TI + + K +A + ++FK GG +L + FWGQVWGRC D FGQ +CE G PP+ EDMA D+++G KY +ED+P +YC G + T A A++ I LPAA A A GL + GPP S YY+WD GG T FT GP VAG ++ ++ DD GLG R+ GG KCVT H GPYDEL KCYEAT EW+ AKGYE + PV E+YENDPKDT P KL+TKV +PIV K T
Sbjct: 5 TGSATPASPCDGRKHPPTRRGIIVDVMVESADKFVDFMGKAAKAKEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKIIPFVSVRDCSAYMTFLTDALGAEVVYPPAKDPTGKIMCAEMKINGGIIMLGDHCSKDASK-TEASMTIAYEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCHDPFGQPXXLCEVQEGPPPSNEDMAKDMEIGAKYNWRYNWVVEDMPIVYCYGAMSTSAANGPAISEEINKTLPAAFAGAAAAGLAMAGPPASAYYTWDSSPGGTTKFTCGPSVAGGGASALMKDVNGDDIGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAKGT 470
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A6H5JNL3_9PHAE (AraC_E_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNL3_9PHAE) HSP 1 Score: 421 bits (1083), Expect = 6.260e-137 Identity = 204/410 (49.76%), Postives = 270/410 (65.85%), Query Frame = 2
Query: 248 MHLALDVGGVSMYLEEIGHRVYKGA-DKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKIMPYAMVTDATGYLQFLQDVFGATPSMEPMKQSNGKIMWSQVSINGGNFAVGDQC--DASEGTGAEITIIHTIPKGQAETVCQAFKATGGNILCPPAPMFWGQVWGRCKDAFGQSWGICEPPSGTPPTKEDMAIDVKLGEKYKXXXXXSIEDVPKIYCLGEVRTCLAKSSAVAPLIESLLPAAVAEAGKRGLEIVGPPLSGYYSWDPKEGGETSFTTGPMVAGDSST---EEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPIVLK*T 1459
MHLA+D+GGV++Y+EE+G+++ GA H RLHLN ++P V KLV G+K + + +QFWGA +GV++DPFG IWSVS++TN IED+PK+L KI+P+ V D + Y+ F+ D GA P K GKIM +++ INGG VGD C DAS+ T A +TI H + K +A + ++FK GG +L + FWGQVWGRCKD FGQ WG+CE +G + EDMA D+++G KY ++ED+P +YC G + T A A++ LPAA A A GL + GPP S YY+WDP GG T FT GP VAG ++ ++ DD GLG R+ GG KCVT H GPYD+L KCY+AT EW+ KGYE + PV E+YENDPKDT P KL+TKV +PIV K T
Sbjct: 1 MHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKKLARKIIPFVSVRDCSAYMTFVTDALGAEVVYPPAKDPTGKIMCAELKINGGIIMVGDHCGEDASK-TEASMTISHEVGKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQTGPTTSNEDMAKDMEIGAKYDWRYTWAVEDMPTVYCYGAMSTSEATGPAISEETNKTLPAAFAGAAAAGLAMAGPPASAYYTWDPSPGGTTKFTCGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDQLMKCYKATFEWVETKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAKGT 409
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: D8LJ97_ECTSI (AraC family transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ97_ECTSI) HSP 1 Score: 281 bits (719), Expect = 4.720e-85 Identity = 137/272 (50.37%), Postives = 177/272 (65.07%), Query Frame = 2
Query: 659 VSINGGNFAVGDQC--DASEGTGAEITIIHTIPKGQAETVCQAFKATGGNILCPPAPMFWGQVWGRCKDAFGQSWGICEPPSGTPPTKEDMAIDVKLGEKYKXXXXXSIEDVPKIYCLGEVRTCLAKSSAVAPLIESLLPAAVAEAGKRGLEIVGPPLSGYYSWDPKEGGETSFTTGPMVAGDSST---EEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPIVLK*T 1459
+ INGG +GD C DAS+ T A +T+ + + K +A + ++FK GG +L + FWGQVWGRCKD FGQ WG+CE G P+ EDMA D+++G KY +ED+P +YC G + T A + A++ + LPAA A A GL + GPP S +Y+WDP GG T FT+GP VAG ++ ++ DD GLG R+ GG KCVT H GPYDEL KCYEAT EW+ AKGYE + PV E+YENDPKDT P KL+TKV +PIV K T
Sbjct: 1 MKINGGIVMLGDHCSKDASK-TEASMTVSYEVRKDEAGPLAKSFKDNGGEVLEEVSMQFWGQVWGRCKDPFGQPWGLCEVQEGPAPSNEDMAKDMEIGAKYDWHYTWVVEDMPTVYCYGAMSTSAANTPAISEETKKTLPAAFAGAAAAGLAMAGPPASAFYTWDPSPGGTTKFTSGPSVAGGGASALMKDVDGDDNGLGVRTAGGCKCVTTLHTGPYDELKKCYEATFEWVEAKGYESRMPVFELYENDPKDTPPEKLKTKVCIPIVAKGT 271
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: D8LJ96_ECTSI (Glyoxalase family protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ96_ECTSI) HSP 1 Score: 145 bits (365), Expect = 4.340e-36 Identity = 80/190 (42.11%), Postives = 112/190 (58.95%), Query Frame = 2
Query: 83 TMNATPV--SSAQSDPATLRGVVVSLVVDSTDKVKETMNKTIGAR-----------------------------------EYFRASDANNKIMHLALDVGGVSMYLEEIGHRVYKGA-DKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKI 538
T +ATP S + P T RG++V+++V+S DK + M KT A+ EYFR D + KIMHLA+D+GGV++Y+EE+G+++ GA HARLHLN ++P V KLV G+K + + +QFWGA +GV++DPFG IWSVS++TN IED+PKEL KI
Sbjct: 5 TESATPACPSDGRKHPPTRRGIIVNVMVESADKFVDFMGKTTKAKIWRLTDGGGDALSRPSRTSYLAAPYTHNHRGFPVQEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPIGVGAKLVEHGAKELTKMAEQFWGATFGVYQDPFGQIWSVSNSTNTIEDVPKELARKI 194
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A0F2QEV7_9PROT (VOC domain-containing protein n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A0F2QEV7_9PROT) HSP 1 Score: 68.2 bits (165), Expect = 1.090e-9 Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 2
Query: 122 PATLRGVVVSLVVDSTDKVKETMNKTIGAREYFRASDANNKIMHLALDVGG-VSMYLEEIGHRVYKGADK---AHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIEDIPKELESKIM 541
P GVV LV K + A E R + +++H ++ + + M ++E V + + +HL+V + K V ++ V+AG+K I ++QFWG +YG+ EDPFG WS++ + L+ +M
Sbjct: 6 PGEGHGVVPHLVCKDAAKAIDFYKAAFDAEEMIRLPGPDGRLVHASVLINSNMVMLVDEFPDMVVQSPETLGGTPVTIHLSVTDAKGVVDRAVKAGAKLIMPVERQFWGDLYGMVEDPFGHKWSIATPGENAPRTSEALQEAMM 149
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: V9GF54_9BACL (PhnB protein n=1 Tax=Paenibacillus sp. JCM 10914 TaxID=1236974 RepID=V9GF54_9BACL) HSP 1 Score: 63.2 bits (152), Expect = 3.650e-8 Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 2
Query: 125 ATLRGVVVSLVVDSTDKVKETMNKTIGAREYFRASDANNKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVS 487
A L G V+S+ +T + G +E + +K+MHL+L GG+ MY+ + + + H L ++ A + AG K I QFWGA++GV ED +GV+W V+
Sbjct: 22 AALGGEVISV---------QTHGEIPGTKEEMK-----DKVMHLSLVAGGIPMYMADTVFQKLDRGNGIHLSLSFESDDEAHGAFDRLAAGGKVIDPLKIQFWGALFGVLEDKYGVLWQVT 128
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A5S5BM94_9BACL (PhnB protein n=1 Tax=Paenibacillus methanolicus TaxID=582686 RepID=A0A5S5BM94_9BACL) HSP 1 Score: 59.7 bits (143), Expect = 6.200e-7 Identity = 26/86 (30.23%), Postives = 43/86 (50.00%), Query Frame = 2
Query: 239 NKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTT 496
+K++HLA GGV+ ++ + H L + A + AG + + +QFWG+++GV ED FGV+W V+ T
Sbjct: 46 DKVLHLAFVAGGVTFFMSDSPFNAVTRGSGMHLSLEFATDAEAHDAFDKLSAGGRVVDPLKQQFWGSLFGVLEDKFGVLWQVTTPT 131
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: UPI000F83A009 (GyrI-like domain-containing protein n=1 Tax=Sulfuriflexus mobilis TaxID=1811807 RepID=UPI000F83A009) HSP 1 Score: 59.7 bits (143), Expect = 9.490e-7 Identity = 37/111 (33.33%), Postives = 53/111 (47.75%), Query Frame = 2
Query: 1115 GPPLSGYYSWDPKE-GGETSFTTGPMVAGDSSTEEAAKDDTGLGFRSLGGVKCVTVTHVGPYDELGKCYEATLEWIAAKGYEDKCPVTEIYENDPKDTEPAKLRTKVSVPI 1444
GPP + YY+ D ++ E F + G + ++T G K V+ H+GPY ++ Y A +WI GYE E+Y NDP T P KL TK+ +PI
Sbjct: 51 GPPFAIYYNMDMQDLDVEFGFPISTNLTG---RDNIHSNETPSG-------KSVSCLHIGPYSDVESTYNALFKWIKDSGYEATGVAYEMYLNDPDQTPPEKLETKIFLPI 151
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: UPI0010C0C5DE (VOC family protein n=1 Tax=Paenibacillus sp. SY21-1 TaxID=2562315 RepID=UPI0010C0C5DE) HSP 1 Score: 58.9 bits (141), Expect = 1.120e-6 Identity = 26/90 (28.89%), Postives = 46/90 (51.11%), Query Frame = 2
Query: 239 NKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVSDTTNQIE 508
+K+MH++L GG+S ++ + + + + H L + E + G K + KQFWG+++G+ ED FGV+W V+ E
Sbjct: 46 DKVMHMSLIAGGISFFMSDSPFQPIERGNGMHLSLEFDDEAEAYSRFDKLAEGGKVLDALKKQFWGSLFGLVEDKFGVLWQVTTEAKPAE 135
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Match: A0A1R1AUM0_PAELA (3-dmu-9_3-mt domain-containing protein n=14 Tax=Paenibacillus TaxID=44249 RepID=A0A1R1AUM0_PAELA) HSP 1 Score: 58.5 bits (140), Expect = 1.500e-6 Identity = 25/86 (29.07%), Postives = 45/86 (52.33%), Query Frame = 2
Query: 230 DANNKIMHLALDVGGVSMYLEEIGHRVYKGADKAHARLHLNVENPKDVAEKLVRAGSKTIQECDKQFWGAIYGVFEDPFGVIWSVS 487
+ +K+MHL+L GG+ +++ + + + + H L + A + G K + QFWGA++G+ ED FGV+W V+
Sbjct: 43 ELKDKVMHLSLVAGGIPIFMSDSIFQTLERGNGIHLSLSFESDAEAHEAFDRLAEGGKVLDPLKTQFWGALFGLLEDKFGVLWQVT 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig87.16633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig87.16633.1 >prot_H-paniculata_contig87.16633.1 ID=prot_H-paniculata_contig87.16633.1|Name=mRNA_H-paniculata_contig87.16633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=475bp MASFDTKAEGSIAEQEATMNATPVSSAQSDPATLRGVVVSLVVDSTDKVKback to top mRNA from alignment at H-paniculata_contig87:12800..19700- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig87.16633.1 ID=mRNA_H-paniculata_contig87.16633.1|Name=mRNA_H-paniculata_contig87.16633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6901bp|location=Sequence derived from alignment at H-paniculata_contig87:12800..19700- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig87:12800..19700- >mRNA_H-paniculata_contig87.16633.1 ID=mRNA_H-paniculata_contig87.16633.1|Name=mRNA_H-paniculata_contig87.16633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at H-paniculata_contig87:12800..19700- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |