mRNA_H-paniculata_contig8696.16631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig8696.16631.1
Unique Name	mRNA_H-paniculata_contig8696.16631.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8696.16631.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8696.16631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8696	contig	H-paniculata_contig8696:744..6851 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	mitochondrion
Exons	8
Model size	1358
Cds size	1335
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931091.429129-UTR-H-paniculata_contig8696:743..766	1622931091.429129-UTR-H-paniculata_contig8696:743..766	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig8696 744..766 +
1691481585.895146-UTR-H-paniculata_contig8696:743..766	1691481585.895146-UTR-H-paniculata_contig8696:743..766	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig8696 744..766 +

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8696.16631.1	prot_H-paniculata_contig8696.16631.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig8696 767..6851 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig8696:744..6851+
coding sequence from alignment at H-paniculata_contig8696:744..6851+

protein sequence of mRNA_H-paniculata_contig8696.16631.1

>prot_H-paniculata_contig8696.16631.1 ID=prot_H-paniculata_contig8696.16631.1|Name=mRNA_H-paniculata_contig8696.16631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=445bp
MLRLMTRRMVQAGAAPTEGTVHVKALRILLSEANGRVQDLEAKLDEQSTR
ANLNEDGSRVATGCRECTRKDREISDLQDTLTQVLANGCPPSNQTREAAG
RTGAAWSLRGGSGSASASGKSRNQPGNEKDLVTRHAAVLARRRGRMPQRE
MFACGSTILREMIGNDVVAKLDSLPSGARQTFSRQAISTLMWLYLEVERH
VFPNLPPRSCSSPSTFDWLQTCSKAQVLRCNEGLAPASHNAAISMPNGKH
LVTARGKSALADSAFLGSSRLDDQDGASGDTSDRERVSLRVASVADETLE
PSVSSLETLTTIVAATARSGGLQDEPEKSTIGNQGTGVCRKEPFPEVLPH
RRPRMDGQVWVLSDVRTRDLVDSECPVDGGPASSRYWCRRRPSPDGDGCR
RGAPVLFAGYHHAGRREWRLHGRLISVRAFFRDLASPPQVLREA*

mRNA from alignment at H-paniculata_contig8696:744..6851+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig8696.16631.1 ID=mRNA_H-paniculata_contig8696.16631.1|Name=mRNA_H-paniculata_contig8696.16631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6108bp|location=Sequence derived from alignment at H-paniculata_contig8696:744..6851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGCAAGATAGAGAAACAGTTATGCTTCGTCTGATGACTCGACGCATG
GTACAAGCTGGAGCGGCTCCGACTGAGGGCACTGTCCATGTCAAAGCGTT
GCGAATCTTACTGAGCGAAGCGAACGGCCGAGTTCAAGACCTTGAGGCAA
AGCTCGACGAGCAGGTGCGCATAATGGCGATGAGGGCAGAGGGAGGGAGG
GGTGAACCATGACAACGTATGCCGTAGTCTTTCGAGCATTAACCTCGCAT
TCATACAGTGCTGGAACGGGGCAGGCCGGGTTTGCGCCGGCCAGGCTGTG
TTTCATAAGGGTAATTGATACTAGCCACTAGTCGTCATCCTTGGATTGCT
ACGCCACCCGGAATTCTGCTAGAGGTTGTGGGGATCCCGGGTAGCCAAAT
GTTGTACATTTGGCAGGCGTGACTATATGACAAGTACCGCACGAGGCTTT
TATCTTCGTACGCACGTCTAAAAAACGTGGGGCCACACACAGGAAACGAC
TTCTTGTGTGATAAACTTGAAGTATAACCTGCGTACATAATCCTGATAAA
GTATGGTCAGGAGTATGTTTGCTCCAGGGCGTTACAAGTACCAGCTTAGG
AGACACCCTCAAGGATGTGAACTCTGCGACCGAGGTCAAGAGGCTCACGA
GATACATCGCATGAATCCCCATGCCCTATATCCAACACTTGTACTGTTCC
AGTCCACAAGAGCCAACCTCAACGAAGACGGGAGTAGGGTCGCCACCGGT
TGCCGTGAATGTACGAGGAAGGACAGGGAAATTTCAGACCTGCAGGACAC
CCTTACGCAGGTGTGTCTTTGTGCATGCGTTCAGGGGCAGGGGATAGGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTGTACTAGTCGTTACACAG
TGACTGTCGGTCGTTTTCTCGTGTGTGCGTACCTGGGTTGGTGGGACGTA
CGTACTTGGCAGGAACCAAAAGTACAGAAATCGAAAAGGATTTTATCGAA
AATGGAGAGGAGGAGGAACAAACGCGAAAGGTGCACTCACTATTATAGGT
TTGGTGGCGGCATTTTTATATGAGTGAATAAGAGCTCTATCCTCTTGACG
GTCAATTCACCCAACTGTCGGATCATTTTCGTCTCTAGGGTGTAGGTACA
TGTTGAATGTAAATATGTCGAGACTTGGTATTCCACTTTCATCAAAAGTA
GGTGCACTCGATAGCGCTATTGAAAGGAGTAAACTTTCAAAGCTTACTCG
TTATTCTGCGATTCGTCACATTGCGCTGGTTATACGTAGCTGAAGCTACT
TTCGTCAGAAGACAAGCACGTTGAAAATGATTCAGTTGTTGACAGAAAGT
ACGCATGAATACGCTTGAGGAAGCTGGTCGGGGTATCATAAAATCCTCTG
TGATTCCGCAGCGCACGAATCAAGAGTACAAGACGTCAGCGATAGATGGC
ACGGTGCGTGATGCCAAAAAGGGAATAATGCCTATGCGAGAGATGTTTCT
TAAAGCAAGCAGTCGGAGGAACGATTGACGGCGCATGGAGTGCGAACAGA
ATAAAAGGCGCTTCTTTTCTACCCCTCAGTGTATGCCCTATATAATCTTA
ATTCATGTGCATATCCATGTCGTGCGTATCTATTCTGGAATGACTACACC
GATCAGGTGCTCGCGAACGGGTGCCCACCGAGCAACCAGACGAGAGAGGC
GGCAGGACGAACTGGGGCCGCTTGGAGCCTGCGCGGGGGATCGGGGTCAG
CTTCTGCCTCTGGAAAGTCGAGGAACCAGCCCGGGAATGAAAAGGTTTGC
AGCTGCATCAGAATGTGGACCGGGTGTGATTAGAGTGGTTGTTGGTTACG
CCGCAGGTGTTGGATCAGGTCGACCGGCGTGTGCGGAGAGGTCGTTTCAT
GTGAGCAAGTATTGGGAAAGCAAGAAGCCCTGTCTGTTTCCGAGCTGAGC
TTCCGTGGAGATGAGGTTCGGAAATGGATAGGGCCTCTTGCTCTTCCTGC
AAGTTTCTCCCGTTGAACGATCCCTCCGCACGCTGATAGTTGACCTGATC
CTGACCAAGACGCTAATTGTTTTCTTGTTCTCTTGCAAGAACCCGCGTCG
ACGTTACGTGTAACTATATCATGTATGGTGTTGATGCTGTTCTGTATCTG
AATGCGCCGAGCGGGAATGCTTGCTTTCCGCCGCCTCCTTGGGGAGTAGC
ATCTATGAAAATTTATGGATTTTATGGCGAGTGGGCAGGTACTATGGGGG
CTTGAAGCGAAGTCGACCAGAGGTTGTGAAGAGGAATTTCTACTGCAAAG
ATGGACCGGCCGTGAATGATGCTGTGTCTTTGCCTCGCAAGGGCGTTTGA
GGTTTGTTGGGTTGGTCGGCCAAACTTGAGGGGTGTAGAGCTAGCTAGCT
GGCTGGCGAAGCTCACCGCTAGCTTTACACCCCTCTTCTTCGATGTTCCG
GGACTGACCGACATACCAACCTCGAATGCCCCTGTGCGAGAAACAAGCAC
CATCATGTACCGACCCCCCATCTTTGCAGTGGAAACCCCCTTGTTCACGG
CCTTCGGTCGACTTCACTCGGCCACCAGCAAGTAGTCGTTATTCACCGCA
AAAGCTCATCCGTGTCCACCACCAGGCAGGCGGCGGGAACTCAGTCTCCC
GCTCGATGCAATCAGACCCAAAACAGCATGAGCAGCATGCATGTACACAC
GGTAGATGAGTGTCTCCATCAAATGACAGTATCGCTTATGAGACAGTTGT
TTTCAAGTAAAACTCTATCTTTGTATGGAACAGTGACGATTCTTGTCGCC
CCATTTTTTCTTTTTCGTTTCGATAGCATTCTCGCGCTATGTTTGAGCCC
ACTTGCGTGAGGATTCATGGGTTGAACCCGTTGGCTTGGCCTGCCTCGGC
GAATTGGCCAATGACCAAGCCTACAGAAGCAAATAGATCCATGTTAGTTG
GTAATTGACCTTCCCGTGTGGCGTTCAAGTGTACGACATTTCGTGGGTTC
TTTGAAAACCACATTCTTCCTCGAGAGTGATCACGGTACGTCCAACATTC
CATGACCCTCCATGAATATAGGACTTGGTCACCAGGCACGCCGCGGTCCT
AGCTCGGCGCAGGGGACGGATGCCTCAGCGCGAAATGTTTGCGTGTGGCA
GTACCATCCTACGGGAGATGATCGGGAATGACGTCGTCGCCAAGCTCGAC
AGGTGTGCTTCAAGTAGTCTCATGACGTAGACGGCGGTGTGCTGCACAAG
GAAGTTTTCGCAACGATAAAAATGTAGAGGCACAAGTTATGAGGAGGCTT
GCATCTGATCCCGGCCTCTTCGACTCCCGTTACTCAATCCAAGAAGTGAT
CTCGTTTGGTTTGTTCGAGTGCACTGCTTTGCGAATATTTTGCAGCGGCC
AGCTGTTGTGAAAATGCCCTCACCTCCTCAGCCTGTTGCGTTTTAGCGAG
GCCACGAAGTTTATCTCCCTTCTCGACGATTTGCGATTTATCAGGACCTG
ATGATGGTCACCTATACATCTCTGTAGCTGAACCACCCCCCCCCCCCCCC
CCCCCTTCCCTACCTCCAGCTTGCCGTCTGGCGCGCGACAAACGTTCTCT
CGACAAGCAATCAGTACCTTGATGTGGCTCTACTTGGAGGTGGAACGACA
CGTTTTCCCGAACCTGCCTCCGCGGTCATGCTCGAGCCCCTCTACGTTCG
ATTGGCTACAGACCTGCTCGAAGGCTCAGGTTCTGCGGTGTAACGAAGGA
CTAGCGCCTGCATCTCACAATGCAGCAATTTCGATGCCCAACGGCAAGCA
CTTGGTCACGGCCCGCGGGAAGTCGGCTCTCGCCGATAGTGCGTTCTTGG
GTTCCTCGCGTTTGGATGATCAAGATGGGGCTTCCGGCGATACTTCGGAC
AGGGAACGCGTTTCCCTCCGTGTTGCCAGTGTGGCTGACGAAACTCTGGA
ACCCTCCGTGTCTAGCCTGGAGACATTGACTACCATTGTTGCAGCAACGG
CGAGGAGCGGGGGGCTCCAGGACGAACCCGAAAAATCCACCATCGGTAAC
CAGGGAACAGGTGTCTGTCGCAAAGGTATGAATGAAAAAACACATGTATC
TTCAGGACTAAATTTTTGAGAGGCAACATCCTGTAAGCAACCGTCGTCTT
GAAATTGACTCCCTCGTAAGGCCCGTTCTAAACGAGGCCATTTTTCCCCC
GAGTTTCTCTGTTTTTCTGTTTCTCGACAATCGGAAATCGCCATACCGAG
CTCAAAATTGAAAGGAAAGTGCCGAAACACTGTGCAGCATGTTGCCCTCA
TACGTCTGGTGCACTTAGGTCACAGCCCTCAACTTGTCCAGCTCGCTATC
GCGGTTTCCATTTTTCTAAAAATGGGAAATGGAAAAATCAGACAGAAGAT
AGTCTCGTTTAAATCATGCCTAAGAGCCTAGCTAAATGAGTCCGTTTTTT
ATCCGATTTTCTCTTTCCGAAAAATTGGAAATCGCGACAGCGAGCTCTAA
ATTGAGGAAAACGGGCGGGAACGCTCATCAGTATGATACCCTCAAGCGAT
ATCGCGATTTCTAATTTTCGGAAAACAGGGAAATCGGAACTATATCATAC
AAAAAGCGGCCTCGTTTAGCTCATGCCTAAGTTGATGCTAACCGTAGACG
TGAAATGGCAATAACTAGGCCGCGTCCCTCCATCTTCATGACTGTTTCCG
CTGTATCGTCGCGGAAGCCTTCAGTGCAGTCATTGAGCTCACGACGGTAG
CAGGCATGCATTTTTGCGGTTTGATACCAGGGATGATTAAACGAGGCAAG
GCAGCATGTTCATTGACCTCACCAACCTATCATCTCGATCCAAGGTTTCC
GTCCAACAGTGTGTGGACACGAGAACCCTCCGCCTTGACTCTATATATTC
GACGTACAACCGCCCTCGCTGGGGCTCCAACGCTACCGTGATACTATCAT
GGTATGTAGGCTTTTTGTATCTGAATGTTTGCGCTCCGATGTCCTTGCAT
GTATATACACGCAGAAACGTCGCAAGCACTCATGATATGCCTCAAGTCGT
TATGATTAATAGTGCTACCCCCTCTTCCCCTCCTCCACCTCACCGCCCCG
CCCCCTGTGAACCTCCTGTCTTCGACAACTGACACGCCGCCGCCTTTTCT
CAGAGCCTTTTCCCGAGGTCTTGCCTCACCGCCGGCCCAGGATGGACGGC
CAGGTATGGGTACTCAGTGATGTAAGGACGGTATGTTATATATAGCGAAT
TCCCCATTTCGACTCCGGTTCATGCTGGTTCGTCGTGTCGCGTCTAAGCG
GTGCCGTCTAGTAGGGCGGGGCTAGTGACCATTGCAGTATCTCTCCGACG
AACGAAGAAGAGAGAGTGAGCCCAATATCCTCCTGTATGGATTCACCGTT
CGGATGTCAGCAAGAGGTGACTCCCGAAGAGAGACACTGCAGGAGACCGT
AGGACGGAAATCGCAGATACCATGCGTCCCGATACGTTCCCGAGCGTAAG
ACCCAGCATCACCCTCATACCCCCGCTCTCGGTGCCGTTCGAATGTTCGT
GATTGCCCCATACACTCGGTGTCCCACGTCAGCGGGATCTCGTCGACTCC
GAATGTCCCGTCGACGGTGGACCGGCCTCGAGCAGGTATTGGTGCCGACG
CCGACCGTCGCCGGACGGCGATGGATGTCGGCGAGGAGCTCCAGTCCTCT
TCGCCGGTTACCACCACGCCGGTCGCCGCGAGTGGCGCCTCCATGGCCGC
TTGATCTCCGTCCGGTGCGTAGGAGAGCGCCAGGGTTACTCGCGATCGAA
GCGTCAACAACGTGCAGCATATCCCACACAGAGATGTAATGACCATGTCG
GGCCATGTTCATGTAGTGGCTCGAGGCGTTCGAGCTCCGACGTGCTTGCA
TGTATATACACGCAGAAACGTCGCAAGCACTCATGATATGCCTCAAGTCG
TTATGATTAATATTGTTACCCCCGCTCCCGCCCCCCGGCCTCGCTGCTCC
ACTCCCCATGTGAACCTCCCGTCTTCGACAACTGACACGCCGCCGCCTTT
TCTCAGAGCCTTTTTCCGAGATCTCGCCTCACCGCCGCAAGTACTGCGTG
AGGCATGA

Coding sequence (CDS) from alignment at H-paniculata_contig8696:744..6851+

>mRNA_H-paniculata_contig8696.16631.1 ID=mRNA_H-paniculata_contig8696.16631.1|Name=mRNA_H-paniculata_contig8696.16631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at H-paniculata_contig8696:744..6851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCGTCTGATGACTCGACGCATGGTACAAGCTGGAGCGGCTCCGAC
TGAGGGCACTGTCCATGTCAAAGCGTTGCGAATCTTACTGAGCGAAGCGA
ACGGCCGAGTTCAAGACCTTGAGGCAAAGCTCGACGAGCAGATGCTTCGT
CTGATGACTCGACGCATGGTACAAGCTGGAGCGGCTCCGACTGAGGGCAC
TGTCCATGTCAAAGCGTTGCGAATCTTACTGAGCGAAGCGAACGGCCGAG
TTCAAGACCTTGAGGCAAAGCTCGACGAGCAGTCCACAAGAGCCAACCTC
AACGAAGACGGGAGTAGGGTCGCCACCGGTTGCCGTGAATGTACGAGGAA
GGACAGGGAAATTTCAGACCTGCAGGACACCCTTACGCAGTCCACAAGAG
CCAACCTCAACGAAGACGGGAGTAGGGTCGCCACCGGTTGCCGTGAATGT
ACGAGGAAGGACAGGGAAATTTCAGACCTGCAGGACACCCTTACGCAGGT
GCTCGCGAACGGGTGCCCACCGAGCAACCAGACGAGAGAGGCGGCAGGAC
GAACTGGGGCCGCTTGGAGCCTGCGCGGGGGATCGGGGTCAGCTTCTGCC
TCTGGAAAGTCGAGGAACCAGCCCGGGAATGAAAAGGTGCTCGCGAACGG
GTGCCCACCGAGCAACCAGACGAGAGAGGCGGCAGGACGAACTGGGGCCG
CTTGGAGCCTGCGCGGGGGATCGGGGTCAGCTTCTGCCTCTGGAAAGTCG
AGGAACCAGCCCGGGAATGAAAAGGACTTGGTCACCAGGCACGCCGCGGT
CCTAGCTCGGCGCAGGGGACGGATGCCTCAGCGCGAAATGTTTGCGTGTG
GCAGTACCATCCTACGGGAGATGATCGGGAATGACGTCGTCGCCAAGCTC
GACAGGACTTGGTCACCAGGCACGCCGCGGTCCTAGCTCGGCGCAGGGGA
CGGATGCCTCAGCGCGAAATGTTTGCGTGTGGCAGTACCATCCTACGGGA
GATGATCGGGAATGACGTCGTCGCCAAGCTCGACAGCTTGCCGTCTGGCG
CGCGACAAACGTTCTCTCGACAAGCAATCAGTACCTTGATGTGGCTCTAC
TTGGAGGTGGAACGACACGTTTTCCCGAACCTGCCTCCGCGGTCATGCTC
GAGCCCCTCTACGTTCGATTGGCTACAGACCTGCTCGAAGGCTCAGGTTC
TGCGGTGTAACGAAGGACTAGCGCCTGCATCTCACAATGCAGCAATTTCG
ATGCCCAACGGCAAGCACTTGGTCACGGCCCGCGGGAAGTCGGCTCTCGC
CGATAGTGCGTTCTTGGGTTCCTCGCGTTTGGATGATCAAGATGGGGCTT
CCGGCGATACTTCGGACAGGGAACGCGTTTCCCTCCGTGTTGCCAGTGTG
GCTGACGAAACTCTGGAACCCTCCGTGTCTAGCCTGGAGACATTGACTAC
CATTGTTGCAGCAACGGCGAGGAGCGGGGGGCTCCAGGACGAACCCGAAA
AATCCACCATCGGTAACCAGGGAACAGGTGTCTGTCGCAAAGCTTGCCGT
CTGGCGCGCGACAAACGTTCTCTCGACAAGCAATCAGTACCTTGATGTGG
CTCTACTTGGAGGTGGAACGACACGTTTTCCCGAACCTGCCTCCGCGGTC
ATGCTCGAGCCCCTCTACGTTCGATTGGCTACAGACCTGCTCGAAGGCTC
AGGTTCTGCGGTGTAACGAAGGACTAGCGCCTGCATCTCACAATGCAGCA
ATTTCGATGCCCAACGGCAAGCACTTGGTCACGGCCCGCGGGAAGTCGGC
TCTCGCCGATAGTGCGTTCTTGGGTTCCTCGCGTTTGGATGATCAAGATG
GGGCTTCCGGCGATACTTCGGACAGGGAACGCGTTTCCCTCCGTGTTGCC
AGTGTGGCTGACGAAACTCTGGAACCCTCCGTGTCTAGCCTGGAGACATT
GACTACCATTGTTGCAGCAACGGCGAGGAGCGGGGGGCTCCAGGACGAAC
CCGAAAAATCCACCATCGGTAACCAGGGAACAGGTGTCTGTCGCAAAGAG
CCTTTTCCCGAGGTCTTGCCTCACCGCCGGCCCAGGATGGACGGCCAGGT
ATGGGTACTCAGTGATGTAAGGACGAGCCTTTTCCCGAGGTCTTGCCTCA
CCGCCGGCCCAGGATGGACGGCCAGGTATGGGTACTCAGTGATGTAAGGA
CGCGGGATCTCGTCGACTCCGAATGTCCCGTCGACGGTGGACCGGCCTCG
AGCAGGTATTGGTGCCGACGCCGACCGTCGCCGGACGGCGATGGATGTCG
GCGAGGAGCTCCAGTCCTCTTCGCCGGTTACCACCACGCCGGTCGCCGCG
AGTGGCGCCTCCATGGCCGCTTGATCTCCGTCCGCGGGATCTCGTCGACT
CCGAATGTCCCGTCGACGGTGGACCGGCCTCGAGCAGGTATTGGTGCCGA
CGCCGACCGTCGCCGGACGGCGATGGATGTCGGCGAGGAGCTCCAGTCCT
CTTCGCCGGTTACCACCACGCCGGTCGCCGCGAGTGGCGCCTCCATGGCC
GCTTGATCTCCGTCCGAGCCTTTTTCCGAGATCTCGCCTCACCGCCGCAA
GTACTGCGTGAGGCATGAAGCCTTTTTCCGAGATCTCGCCTCACCGCCGC
AAGTACTGCGTGAGGCATGA