mRNA_H-paniculata_contig8692.16630.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8692.16630.1
Unique NamemRNA_H-paniculata_contig8692.16630.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: D8LQ91_ECTSI (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ91_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.360e-30
Identity = 70/126 (55.56%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   31 DFAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLFSTKDGGVVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFSGEGTADMPDMYSFVNG 408
            DFAGG AH+GIS+SA+ VW + +  VE  LREH DY+LVLTGHSLGAGTAILLK+L        +  G      + AA           LD GRPV VEC+AFAPPPVFS  G   M D+YSFVNG
Sbjct:  235 DFAGGKAHQGISQSAVRVWTAVRGEVEKQLREHSDYKLVLTGHSLGAGTAILLKILLERNAMEALKGGFRLAKDKTAA-------KTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNG 353          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A7S4BYQ8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BYQ8_CHRCT)

HSP 1 Score: 68.2 bits (165), Expect = 1.030e-10
Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   34 FAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLF----STKDG-----GVVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFS 360
            F GG AH G++  A AVW  A   V   L ++ +YRL++TGHSLGAGTA+LL LL     S + G      V+   K D     +A+  T     L       V + CF FAPPPVFS
Sbjct:  194 FCGGRAHSGMADMARAVWVEAGHAVLKELDKYPNYRLIITGHSLGAGTALLLNLLLHELRSPQQGVKCLEWVLNKSKPDKQGSNSASEPTA--VPLPXXXXXRVAIRCFGFAPPPVFS 309          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A7S4F9Q7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9Q7_CHRCT)

HSP 1 Score: 68.2 bits (165), Expect = 1.050e-10
Identity = 49/118 (41.53%), Postives = 62/118 (52.54%), Query Frame = 1
Query:   34 FAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLF----STKDG-----GVVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFS 360
            F GG AH G++  A AVW  A   V   L ++ +YRL++TGHSLGAGTA+LL LL     S + G      V+   K D     +A+  T     L       V + CF FAPPPVFS
Sbjct:  242 FCGGRAHSGMADMARAVWVEAGHAVLKELDKYPNYRLIITGHSLGAGTALLLNLLLHELRSPQQGVKCLEWVLNKSKPDKQGSNSASEPTA--VPLPXXXXXRVAIRCFGFAPPPVFS 357          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A1Z5KQY0_FISSO (Lipase_3 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQY0_FISSO)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-10
Identity = 44/109 (40.37%), Postives = 57/109 (52.29%), Query Frame = 1
Query:   34 FAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLFSTKDGGVVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFS 360
            F GG AH  ++  A  VW +A++ V  +LR +E+Y LVLTGHSLGAGTA LL +L    +  +V                 EGR+           V CFA+A PPVFS
Sbjct:  353 FCGGEAHAEMANMAERVWEAARETVMKVLRSNENYELVLTGHSLGAGTACLLHILCHQDERKLV-----------------EGRN-----------VRCFAYATPPVFS 433          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A7S0UIT3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UIT3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.650e-9
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 1
Query:   34 FAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLFSTKDGGVVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFSGEGTAD 378
            F GG AH  ++ +A  +W  A + V  LL E+ +Y L++TGHSLGAG A+L+ +L    +                         + A+D GRP+   CFAF+ PPVF+G+   D
Sbjct:  160 FCGGEAHSEMANAAEKIWGEAGETVTKLLFENPEYELIVTGHSLGAGAAVLVNILLHQNN-------------------------REAVD-GRPIR--CFAFSSPPVFAGDVAKD 246          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A7S2TJX1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJX1_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 2.930e-8
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   40 GGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLFSTKDGGVVTAGKVDGAAEVAAAAVTEGR-SQLALDAGRPVHVECFAFAPPPVFSGEGTADMP---DMYSFVNG 408
            GG AH+GI +SA AV       +  +LR+H  ++LV+TGHSLG G A++L LL                  + A     +GR  +L LD    V +E +AF PPPVF+            +Y+FV+G
Sbjct:  287 GGVAHDGILRSAFAVLGHVSARLVEILRDHPGFKLVVTGHSLGGGVALVLALLL-----------------KAAQEQDRDGRIPKLPLD----VLIEAYAFGPPPVFTPLSELKQEWQQGIYTFVHG 392          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A7S1HE54_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HE54_HEMAN)

HSP 1 Score: 59.7 bits (143), Expect = 7.980e-8
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   34 FAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKL 195
            F GG AH G++ SA+A+W +    V  LL +H+ Y L L GHSLGAGTA+LL L
Sbjct:  257 FCGGVAHRGVAASAVALWETVGPKVLALLGDHKGYELRLAGHSLGAGTALLLHL 310          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A812SBL0_SYMPI (DAGLA protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812SBL0_SYMPI)

HSP 1 Score: 58.9 bits (141), Expect = 1.820e-7
Identity = 44/128 (34.38%), Postives = 59/128 (46.09%), Query Frame = 1
Query:   28 PDFAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLFSTKDGGVVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFSGEGTADMP--DMYSFVN 405
            P+  G  AH+ +  SA AV    +  +   LRE+  Y LV+TGHSLGAGTAIL  +L S                     A  + R +L           CFAFAPPPV     T  +   +++SF+N
Sbjct:  218 PECPGLHAHKAMLASARAVLERTRPALNEALRENPGYSLVVTGHSLGAGTAILCTVLLSV--------------------AQLDSRPRLT----------CFAFAPPPVVGPLSTRSLSALEIHSFIN 315          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A7S0DSP5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DSP5_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 2.170e-7
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   40 GGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVLTGHSLGAGTAILLKLLFSTKDGGVVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFS---GEGTADMPDMYSFVNG 408
            GG AH+GI +SA AV  SA+D +   L ++  YRLV+TGHSLGAG +I+  LL        +   ++ G+          G   L  ++     +  FAF+PPP+F+       A    M+ F++G
Sbjct:   68 GGYAHDGIVRSAFAVLSSAEDAIIESLSKNPGYRLVITGHSLGAGVSIMASLL--------LLKARIHGS--------FPGVPTLPKES----EIHTFAFSPPPLFTPLWALSDAMTEHMHVFIHG 173          
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Match: A0A7S1Z4F0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4F0_TRICV)

HSP 1 Score: 56.2 bits (134), Expect = 2.470e-7
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   49 AHEGISKSALAVWYSAKDLVEGLLRE-HEDYRLVLTGHSLGAGTAIL--LKLLFSTKDGG----VVTAGKVDGAAEVAAAAVTEGRSQLALDAGRPVHVECFAFAPPPVFSG 363
            AHEGI+++ +AV  SA   +   L E  E+Y + LTGHSLGAGTA +  L+LL +   GG    V+      G  + A A   E +   AL A     V+C+A+APPPVF G
Sbjct:   18 AHEGIARAGIAVLRSALPSMAAALEECGEEYGVTLTGHSLGAGTATMCALELLAARARGGGDDEVLPPFWGKGEDDDADA---EAKLASALRAVASRDVDCWAYAPPPVFLG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8692.16630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ91_ECTSI4.360e-3055.56Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S4BYQ8_CHRCT1.030e-1041.53Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S4F9Q7_CHRCT1.050e-1041.53Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A1Z5KQY0_FISSO1.520e-1040.37Lipase_3 domain-containing protein n=2 Tax=Fistuli... [more]
A0A7S0UIT3_9STRA1.650e-934.78Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2TJX1_9EUKA2.930e-835.43Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S1HE54_HEMAN7.980e-853.70Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A812SBL0_SYMPI1.820e-734.38DAGLA protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A7S0DSP5_9EUKA2.170e-734.13Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S1Z4F0_TRICV2.470e-741.96Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8692contigH-paniculata_contig8692:8207..9769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog2880.D8LQ91
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
Ec32 ortholog descriptionFungal lipase-like domain
Ec32 orthologEc-26_005700.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.3361213-CDS-H-paniculata_contig8692:8206..83601622931091.3361213-CDS-H-paniculata_contig8692:8206..8360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 8207..8360 +
1691481585.8662367-CDS-H-paniculata_contig8692:8206..83601691481585.8662367-CDS-H-paniculata_contig8692:8206..8360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 8207..8360 +
1622931091.3607783-CDS-H-paniculata_contig8692:9512..97691622931091.3607783-CDS-H-paniculata_contig8692:9512..9769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 9513..9769 +
1691481585.8819885-CDS-H-paniculata_contig8692:9512..97691691481585.8819885-CDS-H-paniculata_contig8692:9512..9769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8692 9513..9769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8692.16630.1prot_H-paniculata_contig8692.16630.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8692 8207..9769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8692.16630.1

>prot_H-paniculata_contig8692.16630.1 ID=prot_H-paniculata_contig8692.16630.1|Name=mRNA_H-paniculata_contig8692.16630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MAKRRARAAPDFAGGSAHEGISKSALAVWYSAKDLVEGLLREHEDYRLVL
TGHSLGAGTAILLKLLFSTKDGGVVTAGKVDGAAEVAAAAVTEGRSQLAL
DAGRPVHVECFAFAPPPVFSGEGTADMPDMYSFVNG*
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mRNA from alignment at H-paniculata_contig8692:8207..9769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8692.16630.1 ID=mRNA_H-paniculata_contig8692.16630.1|Name=mRNA_H-paniculata_contig8692.16630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1563bp|location=Sequence derived from alignment at H-paniculata_contig8692:8207..9769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAACGCCGTGCTCGTGCCGCGCCAGACTTTGCCGGAGGCAGCGC ACACGAAGGGATATCCAAGAGCGCTCTGGCTGTGTGGTACAGCGCCAAGG ATCTCGTGGAAGGGCTGCTAAGGGAACACGAAGACTACAGGCTAGTTCTG ACCGGTTAGTTTCCGCCCCATTTGCTGCTACTGCTTTTGTGCCGAGATAT ATATCACCCTTCGCCTGTGACTTACTGTCGTTTAGCTTTGGGAGGTTTTT CGGGGGGGAGGCTTGTTCTCGAGACGCTCACGTGTTAGCATGGCTCATGT ACATTTTTTGTTCTCGGGTATAAGCGGCTGCTAGGTCGATTTTGATAGGT TAGTCTGAACTTTCTCGTCATCTGTGGTATATGTTCTGTCACACGAACTT TAAACTTTGCTTGCCCAAGATCGAAAGAGGCCTTTTCTCTTTCTGCAAAC TGTAAGTAAATCCACCAACATGTTTTGAAAGTTTACTCCTACTTGTACAG GACGGGCAGTCACGGCCACGCCCATGCAGTATATGCTTTGAGCTCGTACA TAATTTGTTCAACGTCTGTGACCTATCAATACAATGATCGCGTCGCGCTC GCGCGCGGGCGCCATGTCCATGAAAATTCAGTTCTAGAAGTTGCTCGAGT AGAATTTTTAAAAGATGCTCCGAAAAAATTAGTATTACCTTTCATCAAGT AACATGGACACCCCCGCGGTCTCGCTGTATTTTTTCTTTCGTTGGTGCTC TTCTTTTTCTGGCCCAGCGTCGGAGAGAGAAAGAGTTAGCTGCGTGCGTA TCCACGTTCCACCTTCAAACTTCCATAGGATTGGCAACCACACCTGCTTG TCCACGGCATCTCTCGGCTCGCGTGCGTAGCTTCACGTATCTGTTGACAG CACTATGATGTAACCTGGTGTCAAAAGGTGGCATGACAAGCACCGACCTA CCTTGTACCCAGACAGAACTACGGATGAGAAGCAGCAGAGCGGAATGAGC AACGTGTGACCTTTTGAACGGTCAGTATAATGGATCATGACAACAGCACA AAATTAACTTGTAATACTTTGTTGACGCAAATCTGAATTCAGCTAGTAAT AGGTCTCATGGTGATCCTGTCCAACGCTCGTTTTCATCAATGTACACCCA AATCAATCCTCGCCAAATGTCTTGTCCCCCATGATTCATTCCACCCAAAC ATCGAGCAGCCCAGGTTGTGGCCTGGTGTTCCCTTCAAGTATGTCTGAAT CCGTCGCTCGCTCGTGTCATGTTTGCCGTGATTCCGTCTCACACTCAACC GCCCAGGCCACAGCCTCGGCGCGGGCACAGCGATTCTACTGAAATTGTTG TTCTCCACCAAAGATGGCGGCGTTGTGACAGCCGGCAAAGTTGACGGGGC GGCGGAGGTGGCGGCGGCAGCAGTCACCGAGGGACGGTCGCAACTTGCGC TGGATGCGGGCCGTCCTGTGCACGTGGAATGCTTCGCATTTGCGCCTCCG CCGGTGTTTTCCGGGGAGGGAACTGCGGACATGCCGGACATGTATTCGTT CGTGAACGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8692:8207..9769+

>mRNA_H-paniculata_contig8692.16630.1 ID=mRNA_H-paniculata_contig8692.16630.1|Name=mRNA_H-paniculata_contig8692.16630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig8692:8207..9769+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAACGCCGTGCTCGTGCCGCGCCAGACTTTGCCGGAGGCAGCGC
ACACGAAGGGATATCCAAGAGCGCTCTGGCTGTGTGGTACAGCGCCAAGG
ATCTCGTGGAAGGGCTGCTAAGGGAACACGAAGACTACAGGCTAGTTCTG
ACCGATGGCGAAACGCCGTGCTCGTGCCGCGCCAGACTTTGCCGGAGGCA
GCGCACACGAAGGGATATCCAAGAGCGCTCTGGCTGTGTGGTACAGCGCC
AAGGATCTCGTGGAAGGGCTGCTAAGGGAACACGAAGACTACAGGCTAGT
TCTGACCGGCCACAGCCTCGGCGCGGGCACAGCGATTCTACTGAAATTGT
TGTTCTCCACCAAAGATGGCGGCGTTGTGACAGCCGGCAAAGTTGACGGG
GCGGCGGAGGTGGCGGCGGCAGCAGTCACCGAGGGACGGTCGCAACTTGC
GCTGGATGCGGGCCGTCCTGTGCACGTGGAATGCTTCGCATTTGCGCCTC
CGCCGGTGTTTTCCGGGGAGGGAACTGCGGACATGCCGGACATGTATTCG
TTCGTGAACGGGTGAGCCACAGCCTCGGCGCGGGCACAGCGATTCTACTG
AAATTGTTGTTCTCCACCAAAGATGGCGGCGTTGTGACAGCCGGCAAAGT
TGACGGGGCGGCGGAGGTGGCGGCGGCAGCAGTCACCGAGGGACGGTCGC
AACTTGCGCTGGATGCGGGCCGTCCTGTGCACGTGGAATGCTTCGCATTT
GCGCCTCCGCCGGTGTTTTCCGGGGAGGGAACTGCGGACATGCCGGACAT
GTATTCGTTCGTGAACGGGTGA
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