mRNA_H-paniculata_contig8607.16568.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8607.16568.1
Unique NamemRNA_H-paniculata_contig8607.16568.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8607.16568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8607contigH-paniculata_contig8607:2398..3098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size701
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8607.16568.1prot_H-paniculata_contig8607.16568.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8607 2462..2959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.9146907-UTR-H-paniculata_contig8607:2397..24611622931081.9146907-UTR-H-paniculata_contig8607:2397..2461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8607 2398..2461 +
1691481581.4105966-UTR-H-paniculata_contig8607:2397..24611691481581.4105966-UTR-H-paniculata_contig8607:2397..2461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8607 2398..2461 +
1622931081.9530292-UTR-H-paniculata_contig8607:2959..30981622931081.9530292-UTR-H-paniculata_contig8607:2959..3098Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8607 2960..3098 +
1691481581.4406412-UTR-H-paniculata_contig8607:2959..30981691481581.4406412-UTR-H-paniculata_contig8607:2959..3098Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8607 2960..3098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.931442-CDS-H-paniculata_contig8607:2461..29591622931081.931442-CDS-H-paniculata_contig8607:2461..2959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8607 2462..2959 +
1691481581.4243743-CDS-H-paniculata_contig8607:2461..29591691481581.4243743-CDS-H-paniculata_contig8607:2461..2959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8607 2462..2959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8607.16568.1

>prot_H-paniculata_contig8607.16568.1 ID=prot_H-paniculata_contig8607.16568.1|Name=mRNA_H-paniculata_contig8607.16568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MLCNPGCRGRAPRTLTTSTSTAATTLYRCVRKLRAGFAMLTAAGLLHGKI
RRFCEALTPATYQCHHQLGHPKPAKILHVFGMMGAVKRGFLDQVQRPPLN
IQRRWRWRLWSSGAGISSSSEFPRWRLLDSELCTSVEEFVSQGVVTQTVC
SSTCGVCIFICVWIY*
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mRNA from alignment at H-paniculata_contig8607:2398..3098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8607.16568.1 ID=mRNA_H-paniculata_contig8607.16568.1|Name=mRNA_H-paniculata_contig8607.16568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=701bp|location=Sequence derived from alignment at H-paniculata_contig8607:2398..3098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATATCTGCGAGCGTCCCATCTGAATAAAACTCTTGCGTCACTTCACAA
TTGCACCTCAGCTGATGCTCTGCAATCCCGGGTGCCGGGGCAGAGCGCCC
CGGACTCTGACAACATCAACATCAACAGCGGCAACAACTCTCTATAGATG
TGTTCGCAAACTGCGTGCCGGCTTTGCCATGCTCACTGCGGCTGGGTTGC
TCCACGGAAAAATTAGGAGGTTCTGCGAGGCCTTGACGCCTGCCACGTAT
CAATGTCATCATCAATTGGGACATCCTAAACCCGCCAAGATTTTGCATGT
CTTTGGGATGATGGGGGCAGTGAAACGTGGTTTTCTTGATCAAGTGCAAC
GCCCCCCGCTGAACATACAGCGGAGGTGGCGGTGGCGACTTTGGTCTTCT
GGTGCGGGGATCTCGTCCTCCTCTGAGTTCCCCAGGTGGAGGCTACTTGA
CAGTGAATTATGCACAAGTGTCGAGGAGTTCGTCTCTCAGGGTGTTGTGA
CCCAAACGGTCTGTTCTTCAACGTGCGGTGTGTGTATATTTATTTGTGTG
TGGATATACTGACTTGTGTTTGGGCAGCAGACAACGGTAACTCAACAATT
GTGACAACAATCACGAAGAGTGCAACGCAACAGCACGTCTTCTATCTTCG
CAAGCGTTACGCAACACACATGATCCTCCACACAGAAAAAACGATGTGTA
T
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Coding sequence (CDS) from alignment at H-paniculata_contig8607:2398..3098+

>mRNA_H-paniculata_contig8607.16568.1 ID=mRNA_H-paniculata_contig8607.16568.1|Name=mRNA_H-paniculata_contig8607.16568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig8607:2398..3098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGCAATCCCGGGTGCCGGGGCAGAGCGCCCCGGACTCTGACAAC
ATCAACATCAACAGCGGCAACAACTCTCTATAGATGTGTTCGCAAACTGC
GTGCCGGCTTTGCCATGCTCACTGCGGCTGGGTTGCTCCACGGAAAAATT
AGGAGGTTCTGCGAGGCCTTGACGCCTGCCACGTATCAATGTCATCATCA
ATTGGGACATCCTAAACCCGCCAAGATTTTGCATGTCTTTGGGATGATGG
GGGCAGTGAAACGTGGTTTTCTTGATCAAGTGCAACGCCCCCCGCTGAAC
ATACAGCGGAGGTGGCGGTGGCGACTTTGGTCTTCTGGTGCGGGGATCTC
GTCCTCCTCTGAGTTCCCCAGGTGGAGGCTACTTGACAGTGAATTATGCA
CAAGTGTCGAGGAGTTCGTCTCTCAGGGTGTTGTGACCCAAACGGTCTGT
TCTTCAACGTGCGGTGTGTGTATATTTATTTGTGTGTGGATATACTGAAT
GCTCTGCAATCCCGGGTGCCGGGGCAGAGCGCCCCGGACTCTGACAACAT
CAACATCAACAGCGGCAACAACTCTCTATAGATGTGTTCGCAAACTGCGT
GCCGGCTTTGCCATGCTCACTGCGGCTGGGTTGCTCCACGGAAAAATTAG
GAGGTTCTGCGAGGCCTTGACGCCTGCCACGTATCAATGTCATCATCAAT
TGGGACATCCTAAACCCGCCAAGATTTTGCATGTCTTTGGGATGATGGGG
GCAGTGAAACGTGGTTTTCTTGATCAAGTGCAACGCCCCCCGCTGAACAT
ACAGCGGAGGTGGCGGTGGCGACTTTGGTCTTCTGGTGCGGGGATCTCGT
CCTCCTCTGAGTTCCCCAGGTGGAGGCTACTTGACAGTGAATTATGCACA
AGTGTCGAGGAGTTCGTCTCTCAGGGTGTTGTGACCCAAACGGTCTGTTC
TTCAACGTGCGGTGTGTGTATATTTATTTGTGTGTGGATATACTGA
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