mRNA_H-paniculata_contig8572.16542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8572.16542.1
Unique NamemRNA_H-paniculata_contig8572.16542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8572.16542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8572contigH-paniculata_contig8572:4405..4767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size240
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.6181138-CDS-H-paniculata_contig8572:4406..44351622931077.6181138-CDS-H-paniculata_contig8572:4406..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 4407..4435 -
1691481579.5329964-CDS-H-paniculata_contig8572:4406..44351691481579.5329964-CDS-H-paniculata_contig8572:4406..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 4407..4435 -
1622931077.6301-CDS-H-paniculata_contig8572:4559..47671622931077.6301-CDS-H-paniculata_contig8572:4559..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 4560..4767 -
1691481579.546874-CDS-H-paniculata_contig8572:4559..47671691481579.546874-CDS-H-paniculata_contig8572:4559..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8572 4560..4767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8572.16542.1prot_H-paniculata_contig8572.16542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8572 4407..4767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8572.16542.1

>prot_H-paniculata_contig8572.16542.1 ID=prot_H-paniculata_contig8572.16542.1|Name=mRNA_H-paniculata_contig8572.16542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
PTIIRLSTATGNTSRAGLTALFSPVPRVSRNALLCRRRIAGTVHLRTPIA
AAFNPCLRNRPRCFFFRLLPSASDPSSAL
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mRNA from alignment at H-paniculata_contig8572:4405..4767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8572.16542.1 ID=mRNA_H-paniculata_contig8572.16542.1|Name=mRNA_H-paniculata_contig8572.16542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig8572:4405..4767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACCATCATCCGCCTCAGCACCGCCACCGGCAACACCTCTCGGGCTGG
ACTCACCGCGCTCTTCTCTCCCGTGCCTAGGGTATCCCGCAATGCGCTGC
TCTGCCGCCGCCGGATCGCTGGAACCGTCCATCTTCGTACTCCCATCGCC
GCCGCCTTCAACCCCTGCTTGCGCAACCGTCCGCGATGTTTCTTCTTCCG
CCTTCTGCGCAGCGGCCGCTGCCGCGATTCTAGACTCGGCCGGCCAAGAT
CCGCGGCTCGTTATCAGGGACCGCTGGCGCTCCCACTCCTCCGCCGCCCC
GCCGGCGGCAACAGCTGCGGCAGCTGCTGCAGCATCCGCTTCCGACCCTT
CTTCCGCCCTCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig8572:4405..4767-

>mRNA_H-paniculata_contig8572.16542.1 ID=mRNA_H-paniculata_contig8572.16542.1|Name=mRNA_H-paniculata_contig8572.16542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig8572:4405..4767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACCATCATCCGCCTCAGCACCGCCACCGGCAACACCTCTCGGGCTGG
ACTCACCGCGCTCTTCTCTCCCGTGCCTAGGGTATCCCGCAATGCGCTGC
TCTGCCGCCGCCGGATCGCTGGAACCGTCCATCTTCGTACTCCCATCGCC
GCCGCCTTCAACCCCTGCTTGCGCAACCGTCCGCGATGTTTCTTCTTCCG
CCTTCTGCCCGACCATCATCCGCCTCAGCACCGCCACCGGCAACACCTCT
CGGGCTGGACTCACCGCGCTCTTCTCTCCCGTGCCTAGGGTATCCCGCAA
TGCGCTGCTCTGCCGCCGCCGGATCGCTGGAACCGTCCATCTTCGTACTC
CCATCGCCGCCGCCTTCAACCCCTGCTTGCGCAACCGTCCGCGATGTTTC
TTCTTCCGCCTTCTGCCATCCGCTTCCGACCCTTCTTCCGCCCTCCATCC
GCTTCCGACCCTTCTTCCGCCCTC
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