mRNA_H-paniculata_contig854.16514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig854.16514.1
Unique NamemRNA_H-paniculata_contig854.16514.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig854.16514.1 vs. uniprot
Match: D8LCD9_ECTSI (Bap31 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCD9_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.740e-45
Identity = 85/141 (60.28%), Postives = 110/141 (78.01%), Query Frame = 2 
Query:  170 GSNLWPTLIRILFPVPATFLFLVCLPLPSRGKQSITRWMLKVFDKIFTFRI-GFPLIYLIITASTALFLVMCLETYGFRAREVQTQDFTEKMHLRGRRWRAERNFYISLMSLIFAVLANRIRLLLKEMEELREQVKELRVR 589
             +NLWP LI+I+FP+PA+FL L+CLPL ++ +  I RW  +++DKIF+F++   PLIYLI+ AS ALF  MCLETYG R REV    F EKM+LRGRRWRAERNFYIS M L  +VLANR+RL+LKE++ L EQ++E+R R
Sbjct:    3 SNNLWPLLIKIIFPIPASFLLLICLPLSTQSR--IMRWTRRLYDKIFSFQVMSIPLIYLIMAASCALFAAMCLETYGLRVREVNATHFDEKMNLRGRRWRAERNFYISFMFLSCSVLANRVRLMLKEVDSLNEQIREMRKR 141
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BLAST of mRNA_H-paniculata_contig854.16514.1 vs. uniprot
Match: W7TBU6_9STRA (Bap31 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBU6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.410e-11
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 2 
Query:  170 GSNLWPTLIRILFPVPATFLFLVCLPLPSRGKQSITRWMLKVFDKIFTFRIGF-----PLIYLIITASTALFLVMCLETYGFRAREVQTQDFTEKMHLRGRRWRAERNFYISLMSLIFAVLANRIRLLLKEMEELREQVK 574
            GSN W   +  +FP+P  FL L+ LP P+R +  I   +L   ++I   R  +      LI +II  +    +    ++   R  E Q   F EK  LR +RWRAERNF++S++  +  V+  RI+ LL ++  L E++K
Sbjct:   46 GSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLK 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig854.16514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCD9_ECTSI4.740e-4560.28Bap31 domain-containing protein n=2 Tax=Ectocarpus... [more]
W7TBU6_9STRA5.410e-1133.57Bap31 domain-containing protein n=2 Tax=Monodopsid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig854contigH-paniculata_contig854:25064..30521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004620.1
Exons5
Model size2142
Cds size570
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.3767633-UTR-H-paniculata_contig854:25063..250851622931073.3767633-UTR-H-paniculata_contig854:25063..25085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig854 25064..25085 +
1691481577.7786403-UTR-H-paniculata_contig854:25063..250851691481577.7786403-UTR-H-paniculata_contig854:25063..25085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig854 25064..25085 +
1622931073.5530002-UTR-H-paniculata_contig854:28971..305211622931073.5530002-UTR-H-paniculata_contig854:28971..30521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig854 28972..30521 +
1691481577.839683-UTR-H-paniculata_contig854:28971..305211691481577.839683-UTR-H-paniculata_contig854:28971..30521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig854 28972..30521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931073.4684908-CDS-H-paniculata_contig854:25085..252741622931073.4684908-CDS-H-paniculata_contig854:25085..25274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 25086..25274 +
1691481577.789295-CDS-H-paniculata_contig854:25085..252741691481577.789295-CDS-H-paniculata_contig854:25085..25274Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 25086..25274 +
1622931073.4812095-CDS-H-paniculata_contig854:25834..258871622931073.4812095-CDS-H-paniculata_contig854:25834..25887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 25835..25887 +
1691481577.8001194-CDS-H-paniculata_contig854:25834..258871691481577.8001194-CDS-H-paniculata_contig854:25834..25887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 25835..25887 +
1622931073.4995625-CDS-H-paniculata_contig854:27033..270771622931073.4995625-CDS-H-paniculata_contig854:27033..27077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 27034..27077 +
1691481577.8134913-CDS-H-paniculata_contig854:27033..270771691481577.8134913-CDS-H-paniculata_contig854:27033..27077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 27034..27077 +
1622931073.5197644-CDS-H-paniculata_contig854:28249..283971622931073.5197644-CDS-H-paniculata_contig854:28249..28397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 28250..28397 +
1691481577.8218074-CDS-H-paniculata_contig854:28249..283971691481577.8218074-CDS-H-paniculata_contig854:28249..28397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 28250..28397 +
1622931073.5381558-CDS-H-paniculata_contig854:28835..289711622931073.5381558-CDS-H-paniculata_contig854:28835..28971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 28836..28971 +
1691481577.831488-CDS-H-paniculata_contig854:28835..289711691481577.831488-CDS-H-paniculata_contig854:28835..28971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig854 28836..28971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig854.16514.1prot_H-paniculata_contig854.16514.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig854 25086..28971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig854.16514.1

>prot_H-paniculata_contig854.16514.1 ID=prot_H-paniculata_contig854.16514.1|Name=mRNA_H-paniculata_contig854.16514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MRDCSEQFVHISTCMFIFLSAFPLLSHCTQGARDYSLISVIDQEIVHTMG
SNLWPTLIRILFPVPATFLFLVCLPLPSRGKQSITRWMLKVFDKIFTFRI
GFPLIYLIITASTALFLVMCLETYGFRAREVQTQDFTEKMHLRGRRWRAE
RNFYISLMSLIFAVLANRIRLLLKEMEELREQVKELRVR*
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mRNA from alignment at H-paniculata_contig854:25064..30521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig854.16514.1 ID=mRNA_H-paniculata_contig854.16514.1|Name=mRNA_H-paniculata_contig854.16514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5458bp|location=Sequence derived from alignment at H-paniculata_contig854:25064..30521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATCGTGTTATGTGTTGGAAATGCGTGACTGTAGCGAGCAATTCGTAC
ATATTAGTACATGCATGTTTATATTTTTATCTGCGTTTCCCCTTCTGAGT
CATTGCACACAAGGTGCTCGAGATTATTCTCTGATATCAGTGATCGACCA
GGAGATTGTACACACTATGGGCTCCAATCTGTGGCCGACATTGATCCGCA
TCCTCTTTCCTGTGAGTGCATCATAGTGTTGTGATGTCTCTCTTTGTTCC
TCTACTGCTTTACCATTGTTTTCTTGCTCTCATGCTGTCCGCAGCCAAAC
GAGAGTCCAATGGTCAGCGCCCCACAAAACGCATAGACTGTCACAGTACA
AAGAGTACCAAGAACAGGAACATTGTACAACAGTATAGTTCACTACGCTA
CAGTGAGTACCATGGAACATTACAGAACTATTTTGTGTTCCACGACTGGT
GAGGTGCCCGATGCATCCATAGCTTCGGAGTCTCTCTAACGTGGTAAGTA
CATTCTCCAGCAGAGACCTTTGGCTCGTGATCAAATGCAAATATTGAATG
CTCGGCATGCAGGTACGGGTTCATCTTTGACCAAATTTGGTCAGGAAATG
TTTAGGGGAGGTGGAAAAACTGCGGACAGCTTCCTTCTCCATTTCGTTGA
TGTGTACTTGGAATTGTCTGGCATATCATGGAATTGTATGGCATATCATG
GAATTGTATGGCATATCAATGGTGATATTGGTCCCCCTTGTGCCTGTCGC
ATGTCTGTTCCTACTGGCCAGGTGCCCGCTACCTTCCTGTTTCTGGTCTG
TCTGCCGCTTCCTTCTCGTGGAAAGTATGTACCGCAGGCAGCTGATATAA
AAGTTGTATGTACAAGATGACAAACGTAATTTGCTCTAGTTACATCGTAT
CGCACAGTGGTACGACGATTCCGTGTAAGTACGAGTACAGACCGTGTGAC
AACCGAAGAGAGGTACTGAGAGTGCCGTCGGTCAAGGCTACATGATGACT
GTCGGCTCACTCCCACAGTACTGTATAATGTTCCGCGTCGAGAAATGACG
TCTGCAGCAGGTACTGTCTGTCTGTCTGCTTTGTAGTCATTCTTATTAAA
CATGCCGTAGTACTGTAGTAGTGGCAGGGAGTTTCCCTCGATTATGATTT
CTCGTGGTGCCACTTGGAGGTACTGTATCGACATCGATCGCGAATCAACA
CGATGATGAACAAGAGACGTTCGCCCAAGCTTCATGTCGGACGAAGTCAA
ACACCGCACTGTGCTGTACTGCATTTTGGGGCACTACATAGTGTTCGTCG
TCTCCGGAACGACGTGTGGTTGCGAGTAGTCTACGTACAAGCATGGGAAA
GCGACACACGCGCCGCCCATCCACACATCACATTCCCCCAGTCACTCCTC
TGCATCTCCAACGTACCAGCGAGCCTAGCAGACAGTTGGGCCAGCACGAG
GCTTTGGAAAGTACCATCTGTTCCAAACGCTGGGACTCTTTGAGTACACA
ATGGACGCAGGCTAAACGTGCTGAAAACTGTGATCTGGGTTATCCGTGTA
GTGTATTGATCCGCGAGATGTTTTATACATCTCTTCCAAGAGCTACGAGT
ACCGTTGTCACGTTAACGTCGAAATAGCACAAAACATAAATTCTGTCAGG
TACATGAACGCACAAATTATGTTGCTCGATACCAGGTGATATCCAATCCT
GCCAGCCTGTCTACATCGTGCTTACCTAGCCCACGTTGACCCTATGTGCA
ATAGCCATACCCGGTATTCACCTTCTTGACGGGGCATAGGCGCGGTCACC
CCAACCGACGGTAAGCGAGATATGCCAACGTCCTCCACGAAATGCGGTCA
AGGATTGAGGCGCCTAATAATGGTAGCGATTTCCCATAGCCGCTTTACTC
CCTTTAACACGCGATATTTCGTACCCCACATCACGCCTCGCCCCCACTGT
TTTACCCCCGCCACTCGCAGACAATCGATAACGCGATGGATGCTCAAGGT
GTTCGATAAGATATGTGAGTCGCGAACAAATTTCGTTTCGTTGAAGTTAC
GATGTTCTTGAGTATTCGTGTGTGAGTGGTGGACATGGTTTTTTCTCTGG
AGTTACGATGTTTTTCTCTTAGTATGCTTGAACAAACGTTTGACGGTGTG
ATGAGTAGAGCCTCTGGACTTGAAGACGACAAGATTTATAATTTCGCCGG
CAGGACTTTGGTTGAAGGTGTTTTTTTTTAAATGAAAACAACAGAAATGT
GCAAGTGGGGTGCTCACTCCCATTAAGTATGGGTTGGAAATGGAGTGGCT
GCGCTGTTCACAAGAAAATTACCCCTACCTTGTCTGTCCGTAGTCTAATG
GTTTCATTGCATGATTAGGAGAGAGTCAACAAGACGACCAAGAGAGAAGC
CCCTCAGAATCTCATTTGCTGAAAGTAGCATTTTCTATCACTAGTGGAGG
CCTGGCAGCTTGATTTTGTTCCCGTACGCTTTAATTCAAAATGCATGAGC
CATTTACAACGGCTCGCTGCCCTCGCAATCTCTGAAAAGTTTCTGACGAT
TCGTCGAGATTATTTATTCGAAGTTACTCTAGTTCAGATTACAATATATA
TATTCGGAAAAAACAACAACGAAGGTAACTACCTCGATGTCTTTCGTATT
CCGTAATAGTGATTTCGTCCACAAATTGTTAAAATGGCCGGATCAAAAGT
ACGGCACAACCATCTCTCTACATATCGGCTCTGTATATTGTGCCGGACGT
TGAGTGTATCGTTCTGTTTGTGTTGCTCTTTTGTTCATGCGACCTGCTGC
ACAGTGCTGTTTTCTTCCTTGACTTTCTCCCCACCTACAGCACGAGAAGG
TATCCTGTTCGAGAGTCTCTCCAAAGAATCTCTCGCGAGACGTCTTTGCT
CCTCCTCACAAACAGAAGCACCGCAACGGTCATGACCTTGCAATCCATGG
TCATTCTTCGTGCCCATCGAGTCAAAACCCATCGCCAACCCACAACGACG
CGCAGATGTAGATGCTCGCCTCTATCCACCATGTTCATGAAAATTTTCTT
CTAGGAGGTCTTCGAAAAGATAATTGAAAAGTCTTCGCGAAAACGGTGAC
CTGCATCACCTTGAGCGTTTTTCAGTATCATAATTTTTCTTCTCGTCACG
TCGATGTCTCCTCGGGCATGTTTCACGTCCTTGCAGTCACATTTCGCATA
GGATTCCCGCTGATCTACCTCATCATCACGGCATCGACGGCGCTGTTTCT
TGTGATGTGCCTAGAGACGTACGGCTTCCGTGCGCGGGAAGTTCAAACTC
AAGACTTTACCGAGAAGATGCATCTTCGAGGAAGGTGAGGAGAGGCTACA
AATATCACTGTCGTATTATTCGCTTTCTATCTATGTATAAGTCTTGGCTG
CAGCTAGCGACGGGTTTCGATGTACTGCGACACGTCAATTTTTACACACC
ATTTGTAGCAATCGGGACTTTTTGTTTTCTTTTTCTAAAAACACGATGCC
AACGCCCGGCTGAAAGCCAAGTAGCTGGGCAGCACACAGCGCTGCATGGT
GAAAGGGTCAGGAGTTGCAAAATATGCTCTCCATCGTTGGAGCAATCCAC
CGTCGGGACAAGCGTGGCGTGAGTATCAACGTTAATGGCCAACACCCTTC
GTTCTGCATCAACTACGATACTAGATCCCTAGATGTCTTCAGGCGAAAGT
ACAGATTTAAGTGCCCCCACCCGTCCCCCACCCGCCGTCTCTTCTCTTGC
GTTTCCCGCGTTTTACACCCAGGCGTTGGCGCGCCGAGCGAAACTTCTAC
ATCTCATTGATGTCGTTGATATTCGCGGTGCTGGCGAACAGGATCCGGCT
CCTGTTGAAAGAGATGGAGGAGTTGCGCGAGCAGGTCAAAGAGCTGAGGG
TTAGATGACTCTGCCCTTCGTCAAATTCCTTTTTCGCTTGGCAAGGTTTT
TGGGCTTATTATCGATGCGTGTGAAAGGAAAGACAGTAACTAACCCTAGC
CGTATGACAATTCCTATTGAGACGATCAGTGGTGTGGTGGACTCGTATGA
CAACGATTCATATTTTCGAGCACCGGCTGCGATATGCACTGCGGTTGTGT
ATTTTCCCGTGCCCTTTCAGAAGTCTTCGTAACCTTCTCGGTGCTGATGC
ATGCAGTGCCTGATGTGTCTGGGATTTTGGTCTCCTGTCTCTTTCTGTCT
GTTGTGCGTGTCACATGCCGTGCTGTCGTGGAACATCGAGCGAGGTTATT
TTGATGTGTCGCTTTTCTGGAATGGTGCGTGTCAACTGGCGGTTGAGACC
TGTATGGAAGGCGAATTGAGATTGTGTTTTGTGTGTCAGAATTACCATCT
TAATGGTACAGCCATCTTGCCCATTTGTTGGTTTGTTGTCCCAACGAGGG
GTAGGTCTGATATATGAGGTCTTGATGGCCTGATGCCTCATCACATATCT
TGTAACGGTGGACGAGTTGTGTCACTTACGCTCTGTTTTCGTCAAAGTGG
CACTCGTTTTGAGGACTGTTTCAACAAGATATTTCAGGCACACCATTGTG
TTGGCATCTGATGAAGATATCAAAATTACAATTTAGCAGCAGGTATTGTC
TAGAACTGGTTCCCAGGTTACGAAATCCGGTCTGCTACTGTCAACATCGG
TAGTCGGTCAAGGGGTTTCTTTTCCCTTAGCTAATATGTGGTCTATCTGT
TGAGACTGTTACGTACAGAGTAACTAAAGGTGACTTTCGTCTGCGCTTTT
CACGTGCTTAATTCCAATATGTTCATCATACATACACTTGTTCTGCACCG
CCTGCAGCAGTTGACAGTTTTGTTCTGATATGACATCGACATAAACCATC
GGGTTCACAGATAGGGACCGGATGATAAGGATGGGTTGTATTCCTTCACA
CAGTTTATATAATGTGTGCATAGTATCGATGGACTAAAGGGACCATAACA
ATGTTCTGCTGATTAATGCCTATTTTCAACATGTAAAGTTATGTTGCTAG
ATACACAAAATTCTCCTTTGTTGACTGCAAGTATCTCGGTTGTGCGTCGT
GGGGTGTAATACCTAGAAAAGGGTACCTCCAACATGTGGCAGTAAATCTT
GGCTGTCCGACGGATATTAATAGGTGAGAACTGTACCACCGTGGAATTGA
TTATTTAACAGGTAATACTTGGGATTGGGAATCAACTTTCTTGTTGGGAC
TGAAGTTTCATCGAATTTGAATGGAAAACTTGGAAAATGATGCAAGCGAA
AGACGCTTTCCTTGCGAATCTATGGAACTCAGATGTGAGCCGTAAATGAG
ACGAATGTGCCTTACTCTGTCTACCGTTCTTCCGGGACCATGTAGAGGTT
GCCTATTGGCACCACTACTCAAAAGTTGTTTCTCAATGTTGCATGTTCTA
ACGTATCTAGCACAAAAGTCTGTGGTAATTGGAGGTCTTCCCATATAGAA
TTGCTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig854:25064..30521+

>mRNA_H-paniculata_contig854.16514.1 ID=mRNA_H-paniculata_contig854.16514.1|Name=mRNA_H-paniculata_contig854.16514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig854:25064..30521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGACTGTAGCGAGCAATTCGTACATATTAGTACATGCATGTTTAT
ATTTTTATCTGCGTTTCCCCTTCTGAGTCATTGCACACAAGGTGCTCGAG
ATTATTCTCTGATATCAGTGATCGACCAGGAGATTGTACACACTATGGGC
TCCAATCTGTGGCCGACATTGATCCGCATCCTCTTTCCTATGCGTGACTG
TAGCGAGCAATTCGTACATATTAGTACATGCATGTTTATATTTTTATCTG
CGTTTCCCCTTCTGAGTCATTGCACACAAGGTGCTCGAGATTATTCTCTG
ATATCAGTGATCGACCAGGAGATTGTACACACTATGGGCTCCAATCTGTG
GCCGACATTGATCCGCATCCTCTTTCCTGTGCCCGCTACCTTCCTGTTTC
TGGTCTGTCTGCCGCTTCCTTCTCGTGGAAAGTGCCCGCTACCTTCCTGT
TTCTGGTCTGTCTGCCGCTTCCTTCTCGTGGAAAACAATCGATAACGCGA
TGGATGCTCAAGGTGTTCGATAAGATATACAATCGATAACGCGATGGATG
CTCAAGGTGTTCGATAAGATATTCACATTTCGCATAGGATTCCCGCTGAT
CTACCTCATCATCACGGCATCGACGGCGCTGTTTCTTGTGATGTGCCTAG
AGACGTACGGCTTCCGTGCGCGGGAAGTTCAAACTCAAGACTTTACCGAG
AAGATGCATCTTCGAGGAAGTCACATTTCGCATAGGATTCCCGCTGATCT
ACCTCATCATCACGGCATCGACGGCGCTGTTTCTTGTGATGTGCCTAGAG
ACGTACGGCTTCCGTGCGCGGGAAGTTCAAACTCAAGACTTTACCGAGAA
GATGCATCTTCGAGGAAGGCGTTGGCGCGCCGAGCGAAACTTCTACATCT
CATTGATGTCGTTGATATTCGCGGTGCTGGCGAACAGGATCCGGCTCCTG
TTGAAAGAGATGGAGGAGTTGCGCGAGCAGGTCAAAGAGCTGAGGGTTAG
ATGAGCGTTGGCGCGCCGAGCGAAACTTCTACATCTCATTGATGTCGTTG
ATATTCGCGGTGCTGGCGAACAGGATCCGGCTCCTGTTGAAAGAGATGGA
GGAGTTGCGCGAGCAGGTCAAAGAGCTGAGGGTTAGATGA
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