mRNA_H-paniculata_contig8498.16477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8498.16477.1
Unique NamemRNA_H-paniculata_contig8498.16477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8498.16477.1 vs. uniprot
Match: D7FNU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU3_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.410e-54
Identity = 134/249 (53.82%), Postives = 166/249 (66.67%), Query Frame = 1 
Query:    1 MSCITVP--KQWTGATAAAPRVEA----VLPTAV-VRRRITKK-----VRATPQLVDSVREVVQAFEFEYAQTRADSVMLKTMLDERRTQLSDLRRHLEKESSENGTLEAVVQHRNTKNEKGDVRLAALEHDFALVVESDKIIAAKASAFESDMVVAVQEHRRIREMTSKGALQLDCAGAALDERERVFMADLRENERLRAEVERGRKDVDKKQCLVRSKQEKAVMARSLAKEAKAELEDLSRETDGLR 711
            MS ITVP  K W G +AA+ RVE+    V+P A  ++RR  KK      RAT  LVDSVREVVQAFE EY+Q RA+SV LK +LD+ RTQLSDLRRHLEKESSENGTLEAVVQHR  +N  GD RL  LE  F  V+  +  IA+ A+A ESD+VV   EH+RIR+ T+  A  LD A A L +RER   A   E++RL A VE GR+ V  ++ L+R +QE+A  +R+LA EA  + + L  E  GLR
Sbjct:    1 MSSITVPTTKTW-GRSAASSRVESAVVPVMPAATPIQRRTAKKSKNSNARATVHLVDSVREVVQAFELEYSQARAESVELKAVLDDHRTQLSDLRRHLEKESSENGTLEAVVQHRAARNTAGDARLRELEAAFKQVLADEGHIASSAAALESDLVVFTAEHKRIRDKTATAASWLDLAQAGLLQRERTLAAAQSESDRLTAAVEAGRRAVADREGLLRGEQERASRSRALAGEAADDAKALESEVAGLR 248
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BLAST of mRNA_H-paniculata_contig8498.16477.1 vs. uniprot
Match: A0A6H5KW75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW75_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.080e-40
Identity = 120/271 (44.28%), Postives = 153/271 (56.46%), Query Frame = 1 
Query:    1 MSCITVPKQ--WTGATAAAPRVEAVLPTAV-VRRRITKK-----VRATPQLVDSVREVVQAFEFEYAQTRADSVMLKTMLDERRTQLSDLRRHLEKESSENGTLEAVVQHRNTKNEKGDVRLAALEHDFALVVESDKIIAAKASAFESDMVVAVQEHRRIREMTSKGALQLDCAGAALDERERVFMADLRENERLRAEVERGRKDVDKKQCLVRSKQEKAVMARSLAKEAKAELEDLSRETDGLRDRVVGKDSECNEAVVRAGAIKREETE 789
            MS ITVPK   W  ++     V  V+P A  ++RR  KK      RAT  LVDS R              A+SV LK +LD+ RTQLSDLRRHLEKESSENGTLEAVVQHR  +N  GD  L  LE  F  V+  +  IA++A+A ESD+VV   EH+ IR  T+  A  LD A A L +RER       E++RL A VE GR+ V  ++ L+R +QE++  +R+LA EA  E + L  E  GLR  +  K+ E         AIK+   E
Sbjct:    1 MSSITVPKTKTWGISSRVESAVVPVMPAATPIQRRTAKKSKISNARATVHLVDSAR--------------AESVELKAVLDDHRTQLSDLRRHLEKESSENGTLEAVVQHRAARNAAGDASLRELEAMFKQVLADEGHIASRAAALESDLVVFTAEHKCIRNKTATAASWLDLAQAGLLQRERAIAEAQSESDRLTAAVEAGRRTVADREALLRGEQERSSRSRALAGEAADEAKALESEVAGLRRDLARKEEEGXXXXDTLAAIKKHTAE 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8498.16477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNU3_ECTSI2.410e-5453.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW75_9PHAE3.080e-4044.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8498contigH-paniculata_contig8498:775..1563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003350.1
Exons1
Model size789
Cds size789
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931066.2572794-CDS-H-paniculata_contig8498:774..15631622931066.2572794-CDS-H-paniculata_contig8498:774..1563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8498 775..1563 -
1691481574.4000401-CDS-H-paniculata_contig8498:774..15631691481574.4000401-CDS-H-paniculata_contig8498:774..1563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8498 775..1563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8498.16477.1prot_H-paniculata_contig8498.16477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8498 775..1563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8498.16477.1

>prot_H-paniculata_contig8498.16477.1 ID=prot_H-paniculata_contig8498.16477.1|Name=mRNA_H-paniculata_contig8498.16477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MSCITVPKQWTGATAAAPRVEAVLPTAVVRRRITKKVRATPQLVDSVREV
VQAFEFEYAQTRADSVMLKTMLDERRTQLSDLRRHLEKESSENGTLEAVV
QHRNTKNEKGDVRLAALEHDFALVVESDKIIAAKASAFESDMVVAVQEHR
RIREMTSKGALQLDCAGAALDERERVFMADLRENERLRAEVERGRKDVDK
KQCLVRSKQEKAVMARSLAKEAKAELEDLSRETDGLRDRVVGKDSECNEA
VVRAGAIKREETE
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mRNA from alignment at H-paniculata_contig8498:775..1563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8498.16477.1 ID=mRNA_H-paniculata_contig8498.16477.1|Name=mRNA_H-paniculata_contig8498.16477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=789bp|location=Sequence derived from alignment at H-paniculata_contig8498:775..1563- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTGCATCACAGTCCCAAAGCAGTGGACTGGAGCTACTGCTGCGGC
GCCGAGGGTTGAGGCAGTGCTACCTACAGCCGTAGTCCGGCGGCGCATCA
CTAAGAAAGTCCGTGCCACTCCCCAACTGGTGGACTCTGTTCGCGAGGTG
GTTCAGGCCTTTGAATTCGAGTATGCCCAAACTCGTGCGGATTCGGTCAT
GCTCAAGACCATGCTCGACGAGCGCCGCACCCAGTTGTCTGACCTACGGA
GGCATCTGGAGAAGGAATCAAGCGAAAACGGCACCCTTGAAGCCGTAGTT
CAGCATCGTAACACAAAAAACGAAAAGGGGGATGTCCGTCTTGCTGCTCT
AGAGCACGACTTCGCCCTCGTTGTTGAAAGTGACAAAATCATCGCAGCAA
AGGCAAGTGCTTTCGAGTCTGACATGGTAGTGGCCGTGCAGGAGCACAGA
CGGATTCGGGAGATGACTAGCAAGGGTGCTTTGCAGCTAGATTGCGCGGG
GGCCGCCCTGGACGAGAGGGAGCGTGTTTTTATGGCCGACCTACGGGAGA
ACGAGCGTCTCCGGGCGGAGGTTGAAAGAGGGCGGAAGGATGTCGACAAA
AAGCAGTGCTTAGTGAGGAGCAAGCAGGAGAAGGCTGTGATGGCTAGATC
ATTGGCGAAAGAGGCGAAGGCGGAGCTTGAGGATCTGAGCCGCGAGACGG
ATGGTTTAAGAGACAGGGTTGTCGGGAAGGATTCTGAGTGCAATGAGGCC
GTTGTACGAGCTGGGGCAATCAAGCGAGAGGAAACTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8498:775..1563-

>mRNA_H-paniculata_contig8498.16477.1 ID=mRNA_H-paniculata_contig8498.16477.1|Name=mRNA_H-paniculata_contig8498.16477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig8498:775..1563- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTGCATCACAGTCCCAAAGCAGTGGACTGGAGCTACTGCTGCGGC
GCCGAGGGTTGAGGCAGTGCTACCTACAGCCGTAGTCCGGCGGCGCATCA
CTAAGAAAGTCCGTGCCACTCCCCAACTGGTGGACTCTGTTCGCGAGGTG
GTTCAGGCCTTTGAATTCGAGTATGCCCAAACTCGTGCGGATTCGGTCAT
GCTCAAGACCATGCTCGACGAGCGCCGCACCCAGTTGTCTGACCTACGGA
GGCATCTGGAGAAGGAATCAAGCGAAAACGGCACCCTTGAAGCCGTAGTT
CAGCATCGTAACACAAAAAACGAAAAGGGGGATGTCCGTCTTGCTGCTCT
AGAGCACGACTTCGCCCTCGTTGTTGAAAGTGACAAAATCATCGCAGCAA
AGGCAAGTGCTTTCGAGTCTGACATGGTAGTGGCCGTGCAGGAGCACAGA
CGGATTCGGGAGATGACTAGCAAGGGTGCTTTGCAGCTAGATTGCGCGGG
GGCCGCCCTGGACGAGAGGGAGCGTGTTTTTATGGCCGACCTACGGGAGA
ACGAGCGTCTCCGGGCGGAGGTTGAAAGAGGGCGGAAGGATGTCGACAAA
AAGCAGTGCTTAGTGAGGAGCAAGCAGGAGAAGGCTGTGATGGCTAGATC
ATTGGCGAAAGAGGCGAAGGCGGAGCTTGAGGATCTGAGCCGCGAGACGG
ATGGTTTAAGAGACAGGGTTGTCGGGAAGGATTCTGAGTGCAATGAGGCC
GTTGTACGAGCTGGGGCAATCAAGCGAGAGGAAACTGAGATGTCGTGCAT
CACAGTCCCAAAGCAGTGGACTGGAGCTACTGCTGCGGCGCCGAGGGTTG
AGGCAGTGCTACCTACAGCCGTAGTCCGGCGGCGCATCACTAAGAAAGTC
CGTGCCACTCCCCAACTGGTGGACTCTGTTCGCGAGGTGGTTCAGGCCTT
TGAATTCGAGTATGCCCAAACTCGTGCGGATTCGGTCATGCTCAAGACCA
TGCTCGACGAGCGCCGCACCCAGTTGTCTGACCTACGGAGGCATCTGGAG
AAGGAATCAAGCGAAAACGGCACCCTTGAAGCCGTAGTTCAGCATCGTAA
CACAAAAAACGAAAAGGGGGATGTCCGTCTTGCTGCTCTAGAGCACGACT
TCGCCCTCGTTGTTGAAAGTGACAAAATCATCGCAGCAAAGGCAAGTGCT
TTCGAGTCTGACATGGTAGTGGCCGTGCAGGAGCACAGACGGATTCGGGA
GATGACTAGCAAGGGTGCTTTGCAGCTAGATTGCGCGGGGGCCGCCCTGG
ACGAGAGGGAGCGTGTTTTTATGGCCGACCTACGGGAGAACGAGCGTCTC
CGGGCGGAGGTTGAAAGAGGGCGGAAGGATGTCGACAAAAAGCAGTGCTT
AGTGAGGAGCAAGCAGGAGAAGGCTGTGATGGCTAGATCATTGGCGAAAG
AGGCGAAGGCGGAGCTTGAGGATCTGAGCCGCGAGACGGATGGTTTAAGA
GACAGGGTTGTCGGGAAGGATTCTGAGTGCAATGAGGCCGTTGTACGAGC
TGGGGCAATCAAGCGAGAGGAAACTGAG
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