mRNA_H-paniculata_contig8461.16457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8461.16457.1
Unique NamemRNA_H-paniculata_contig8461.16457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: D7G5T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T6_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 1.360e-85
Identity = 178/356 (50.00%), Postives = 229/356 (64.33%), Query Frame = 1 
Query:    1 QVASFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAVLSPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTS--NLPSWFQEHLAMLEAEHNAEEELSERDAQRCRTAWTRGFSSSG---EQRSPATAVASR--PSSISDDVDAPVTPATTRKTEDDPPPPSLPS-----PLSEEISASSDVQSDLQKL-----DVAEDPERV-NGESIRLRGVEDGILRKVPARK---------ESGDRVPFPAERG---GVT---EVVPDYRLNAFVYLCPLVSEGCKFTAKAWLQDEDD 969
            +VASFPFL++L LR+AINLSAEPLHDK   FF + GV +L P+SLE+FDGP+DLWEEAAKESLELLLDA N PM+L+DS +ECE A L+GCLRRLQHWS+ AIHDEYHM+TM++T Y T+Q+FIERFDLD+VTL +  NLP W++ HL MLE E  AE EL+ RD  R   AWT G   +    EQR      + R  P+ +  D   P+  + T ++E+      + S     PLS++ +   D Q   Q +     +V E+     +G+S +    E+ I  +   R+         + G+R     E G   GV    +VVPD+RLN FVY+CPLVSEGC FTAKAWLQDEDD
Sbjct:   46 EVASFPFLAQLKLRSAINLSAEPLHDKVNGFFLAEGVNMLHPQSLESFDGPYDLWEEAAKESLELLLDAGNHPMILIDSPTECESACLVGCLRRLQHWSMVAIHDEYHMVTMRNTRYSTSQRFIERFDLDIVTLKAKANLPPWYRNHLDMLEEERTAEAELARRDPDRPARAWTHGVLPTPLPPEQREGENEGSERNTPNKMPADPRQPI--SRTNQSEN------IVSHERGRPLSDQSTVDGD-QGYFQAVGGTHTEVVEEAVAARSGQSAQGGDDEETIEGRATERRTAGAGXXEGDGGERXXXXXEEGTRAGVEVARKVVPDFRLNGFVYVCPLVSEGCTFTAKAWLQDEDD 392
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: M2VVU8_GALSU (Phosphatase / phosphoprotein phosphatase / protein tyrosine phosphatase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VVU8_GALSU)

HSP 1 Score: 112 bits (281), Expect = 9.750e-25
Identity = 61/145 (42.07%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:   10 SFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAV--LSPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHL 438
            SFPF+  LNL+T + LSAE       +F   + + +  L  RSL        + EE  K+ LE +LD  + P+L+ D+S   +V  L+GCLRRLQ+WS+ A+  EY         Y  N+QFIE FD+DL+TL  +LP WF+EHL
Sbjct:   28 SFPFIKLLNLKTVLLLSAEVPTKVVCNFLEENDITLVHLGSRSLTTETSWKPMSEELVKDGLEWVLDRKSHPLLVCDTSGIHQVGILVGCLRRLQNWSLSAVIHEYRTFASSKARY-VNEQFIELFDVDLITLPEDLPDWFREHL 171
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: A0A138ZXW1_GONPJ (Protein-tyrosine phosphatase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZXW1_GONPJ)

HSP 1 Score: 108 bits (269), Expect = 1.680e-23
Identity = 63/149 (42.28%), Postives = 84/149 (56.38%), Query Frame = 1 
Query:   10 SFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAVLSPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAE 456
            +FPF+  LNLRTA+ LS E       +FF  SG+     R +          EE  KE LEL+LD  NQP++++ +S   E   L+GCLR+LQ W+  +I  EYH        +  N+QFIE FDLDLVT   +LP+WF  H  +LE E
Sbjct:   26 NFPFVKNLNLRTAVMLSPEVPMRSVTNFFEDSGI-----RFVHLGQAWKPNLEELMKEGLELILDKKNQPVMVMCTSGVHETGTLMGCLRKLQGWNFNSIVVEYHSFAGSKARF-VNEQFIELFDLDLVTFPLDLPNWFLFHQELLEEE 168
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: A0A1Y1ZD18_9FUNG (Protein-tyrosine phosphatase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZD18_9FUNG)

HSP 1 Score: 102 bits (254), Expect = 2.790e-21
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 1 
Query:    1 QVASFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAV--LSPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAEHNA 465
            Q + FPF+  LNL+TAI LS E      ++FF  + + +  L  R+ +   G   L EE  KE LEL+L+  N P++++ +S   E    +GCLR+LQ W+  +I  EY   +     Y  N+QFIE FD+DLVTL + LP WF E   +L  E  A
Sbjct:   23 QPSHFPFIKTLNLKTAIVLSPEVPSRAVLNFFDENNINLIHLGLRAWKPDLGWKPLSEELVKEGLELVLNNHNYPIIIMCTSGIHETGTFLGCLRKLQTWNFNSIIVEYRSYSGNKARY-INEQFIELFDMDLVTLPAELPEWFVEQYKLLREEEQA 178
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: K3W6Q6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Q6_GLOUD)

HSP 1 Score: 104 bits (259), Expect = 3.840e-21
Identity = 61/157 (38.85%), Postives = 90/157 (57.32%), Query Frame = 1 
Query:    7 ASFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAV----LSPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAEHNA 465
            +SFPFL+ L+L T + LS + L  + VDFF+   + V    L  RS   + G   + E  AKE++E +LD    P++++  +       +IGCLRRLQ+WS+ A  D+Y  L     +   N+QFIE FD+DLVTL  +LP WF  +  ++E E  A
Sbjct:   56 SSFPFLATLHLNTVVYLSYDDLTRELVDFFKEKEITVIHLGLKYRSSSHWKG---ISEGMAKEAIEHILDQRRHPIMVMCKTGVHFAGTIIGCLRRLQNWSLTATIDKYRNLASSIKTRFENEQFIELFDVDLVTLPQHLPDWFVHNQTLMEEERIA 209
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: A0A024GR15_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR15_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.360e-21
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:   10 SFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAVL----SPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAEHNA 465
            SFPF++ L L+T I LS + L  +  DFF  + V V+      RSL  +     + E  AKE+++ +L+    P++L+  +       +IGCLRRLQ+WS+ AI D Y  L     +   N+QFIE FD+DLVTL   +P WF E   ++E E  A
Sbjct:   40 SFPFVANLALKTVIYLSPDELSSELTDFFEETNVEVIHLGAKYRSLSPWKS---MTEGMAKEAIQFVLEKQLHPLMLMCKTGIHMSGTVIGCLRRLQNWSLTAIIDNYRNLASSVKTRFENEQFIELFDVDLVTLPEKMPDWFVESQRIMEEERLA 192
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: A0A151Z7D7_9MYCE (Arf guanyl-nucleotide exchange factor n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z7D7_9MYCE)

HSP 1 Score: 105 bits (261), Expect = 1.320e-20
Identity = 58/153 (37.91%), Postives = 88/153 (57.52%), Query Frame = 1 
Query:   10 SFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAV----LSPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAE 456
            +FPF+  L L+T I LS E        FF  + + +    L    ++       + EE  KE LE +L+ D  P+++  +S   +   L+GCLRRLQ+W++ +I  EY   + +S +   N+QFIE FD+DLVTL +NLP+WF++ L MLE E
Sbjct:  210 NFPFIKMLGLKTVIQLSPEVPIKAVSTFFEENSINLIHLGLKSWKVDTSSSWKPITEELIKECLEFVLNYDYYPLMITCTSGVHQTGVLVGCLRRLQNWNLTSILVEYKAFSGQSNTRYVNEQFIELFDVDLVTLPNNLPTWFRDQLKMLEEE 362
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: A0A5D6XQK1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQK1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.050e-20
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:    7 ASFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAVL----SPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAE 456
            +SFPFL+ L L T + LS + L  + VDFF+   V V+      RS   + G   + E  AKE++E +LD    P+L++  +       +IGCLRRLQ+WS+ A  D+Y  L     +   N+QFIE FD+DLVTL   LP WF  +  ++E E
Sbjct:   76 SSFPFLATLQLSTVVYLSYDDLTRELVDFFKERDVNVIHLGQKHRSAAPWKG---VSEGMAKEAIEHILDQRRHPILVMCKTGVHFAGTIIGCLRRLQNWSLTATIDKYRNLASSIKTRFENEQFIELFDVDLVTLPQQLPDWFVHNQQLMEQE 226
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: F0W4K7_9STRA (Uncharacterized protein AlNc14C17G1827 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4K7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.110e-20
Identity = 57/151 (37.75%), Postives = 85/151 (56.29%), Query Frame = 1 
Query:    7 ASFPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAVLSPRSLEAFDGP-HDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAE 456
            +SF F+S L L+T I LS++ L  +  DFF+   V V+   +      P   + E  AKE+++ +L+    P++L+  +       +IGCLRRLQ+WS+ AI D Y  L     +   N+QFIE FD+DLVTL   +P WF E   ++E E
Sbjct:   38 SSFTFVSNLGLKTIIYLSSDELSIELTDFFKEINVEVIHLGAKYRSTSPWKSMTEGMAKEAIQFVLEKQLHPLMLMCKTGIHMSGTVIGCLRRLQNWSLTAIIDNYRNLASSVKTRFENEQFIELFDIDLVTLPEKMPDWFVESQKIMEEE 188
[Close]
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Match: A0A397V546_9GLOM (Protein-tyrosine phosphatase n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397V546_9GLOM)

HSP 1 Score: 99.0 bits (245), Expect = 3.650e-20
Identity = 57/150 (38.00%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:   13 FPFLSKLNLRTAINLSAEPLHDKAVDFFRSSGVAV--LSPRSLEAFDGPHDLWEEAAKESLELLLDADNQPMLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQFIERFDLDLVTLTSNLPSWFQEHLAMLEAE 456
            FPF+  LNL+T + LS E       +F   + + +  L  +  ++  G   + EE  K+ LE++LD +N P+L++  S   E    IGCLRRLQ+W+  +I  EY         Y  N+QFIE FD+DL+TL  NLP WF E   +L+ E
Sbjct:   29 FPFIKSLNLKTILLLSPEAPTRSVSNFLEDNNIKLVHLGMKVWKSTPGWQPVSEELIKDGLEMVLDIENYPILVI--SGVHETGTFIGCLRRLQNWNFTSIMVEYRSFASNKARY-VNEQFIELFDMDLITLPRNLPPWFIEQKKLLQQE 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8461.16457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5T6_ECTSI1.360e-8550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M2VVU8_GALSU9.750e-2542.07Phosphatase / phosphoprotein phosphatase / protein... [more]
A0A138ZXW1_GONPJ1.680e-2342.28Protein-tyrosine phosphatase n=1 Tax=Gonapodya pro... [more]
A0A1Y1ZD18_9FUNG2.790e-2139.49Protein-tyrosine phosphatase n=1 Tax=Basidiobolus ... [more]
K3W6Q6_GLOUD3.840e-2138.85Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024GR15_9STRA9.360e-2138.46Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A151Z7D7_9MYCE1.320e-2037.91Arf guanyl-nucleotide exchange factor n=1 Tax=Tieg... [more]
A0A5D6XQK1_9STRA3.050e-2039.61Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0W4K7_9STRA3.110e-2037.75Uncharacterized protein AlNc14C17G1827 n=1 Tax=Alb... [more]
A0A397V546_9GLOM3.650e-2038.00Protein-tyrosine phosphatase n=1 Tax=Gigaspora ros... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8461contigH-paniculata_contig8461:998..5455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue3e-43
Seed eggNOG ortholog2880.D7G5T6
KEGG koko:K18043,ko:K18045
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons5
Model size2015
Cds size753
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.4046164-UTR-H-paniculata_contig8461:997..20401622931063.4046164-UTR-H-paniculata_contig8461:997..2040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8461 998..2040 -
1691481573.074945-UTR-H-paniculata_contig8461:997..20401691481573.074945-UTR-H-paniculata_contig8461:997..2040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8461 998..2040 -
1622931063.487902-UTR-H-paniculata_contig8461:4964..50661622931063.487902-UTR-H-paniculata_contig8461:4964..5066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8461 4965..5066 -
1691481573.119572-UTR-H-paniculata_contig8461:4964..50661691481573.119572-UTR-H-paniculata_contig8461:4964..5066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8461 4965..5066 -
1622931063.5024714-UTR-H-paniculata_contig8461:5338..54551622931063.5024714-UTR-H-paniculata_contig8461:5338..5455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8461 5339..5455 -
1691481573.1352863-UTR-H-paniculata_contig8461:5338..54551691481573.1352863-UTR-H-paniculata_contig8461:5338..5455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8461 5339..5455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931063.4193318-CDS-H-paniculata_contig8461:2040..25651622931063.4193318-CDS-H-paniculata_contig8461:2040..2565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 2041..2565 -
1691481573.0846398-CDS-H-paniculata_contig8461:2040..25651691481573.0846398-CDS-H-paniculata_contig8461:2040..2565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 2041..2565 -
1622931063.433763-CDS-H-paniculata_contig8461:3018..31471622931063.433763-CDS-H-paniculata_contig8461:3018..3147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 3019..3147 -
1691481573.0930634-CDS-H-paniculata_contig8461:3018..31471691481573.0930634-CDS-H-paniculata_contig8461:3018..3147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 3019..3147 -
1622931063.4593241-CDS-H-paniculata_contig8461:4668..47501622931063.4593241-CDS-H-paniculata_contig8461:4668..4750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 4669..4750 -
1691481573.101484-CDS-H-paniculata_contig8461:4668..47501691481573.101484-CDS-H-paniculata_contig8461:4668..4750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 4669..4750 -
1622931063.472875-CDS-H-paniculata_contig8461:4947..49641622931063.472875-CDS-H-paniculata_contig8461:4947..4964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 4948..4964 -
1691481573.1098971-CDS-H-paniculata_contig8461:4947..49641691481573.1098971-CDS-H-paniculata_contig8461:4947..4964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8461 4948..4964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8461.16457.1prot_H-paniculata_contig8461.16457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8461 2041..4964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8461.16457.1

>prot_H-paniculata_contig8461.16457.1 ID=prot_H-paniculata_contig8461.16457.1|Name=mRNA_H-paniculata_contig8461.16457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp
MLLLDSSSECEVAWLIGCLRRLQHWSICAIHDEYHMLTMKSTSYDTNQQF
IERFDLDLVTLTSNLPSWFQEHLAMLEAEHNAEEELSERDAQRCRTAWTR
GFSSSGEQRSPATAVASRPSSISDDVDAPVTPATTRKTEDDPPPPSLPSP
LSEEISASSDVQSDLQKLDVAEDPERVNGESIRLRGVEDGILRKVPARKE
SGDRVPFPAERGGVTEVVPDYRLNAFVYLCPLVSEGCKFTAKAWLQDEDD
*
back to top

mRNA from alignment at H-paniculata_contig8461:998..5455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8461.16457.1 ID=mRNA_H-paniculata_contig8461.16457.1|Name=mRNA_H-paniculata_contig8461.16457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4458bp|location=Sequence derived from alignment at H-paniculata_contig8461:998..5455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCGCCAGCTTTCCGTTTCTGTCCAAGCTAAACCTCCGCACAGCTAT
CAACCTCTCGGCGGAACCGTTGCACGACAAGGCTGTTGATTTCTTCCGGT
CATCTGGTGTTGCTGTGGTGAGGTTCTGTTTCTATGGGTTCGACCCCCGC
CCACGAGTTGGCTGCTTTGCGCATCCTATTAGTTTCATGCCGCGCTGCAG
AAGGCAAACCTTGGTTGAATCGATTCATGATTTCACATGTTTGGGGCAGC
AGAAGATAGCAGAGGTGTAGGACGGGCGAGACGCGTATATATCTACAATT
GGCGGAACCATCTCGGCCACATGCAAGGCTGGGCACTTCACTTTCCTATA
TACTGGCTTGTTGTTCGTGTGCGTGCTCGGCTGTTTCAGTTGTCGCCGCG
TTCACTGGAAGCATTCGACGGACCTCATGACCTGTGGGAAGAGGCTGCCA
AGGAGTCGCTCGAGCTGCTCCTCGACGCTGACAATCAACCGATGTTACTC
CTGGACAGGTACATGGTGTGGTCAGGGAGAAAAGTTTGAGGGCACATGGC
AATGCTTTGTTTGCGCTCTTCACAACGCCAAACGGACGTAGATCGCTCAG
GATTTACAGCTATATTGGTAATCTGCACGTTCCCCATCCATTGGCTCATG
TGTCATACGCCAATCTTCGTTTTTGTTAATGTGTTGTTCGGTTGGATGGT
TGAAGCTCTTCGGAATGTGAGGTGGCTTGGCTCATCGGATGTCTTCGGCG
GCTGCAGCATTGGAGCATTTGCGCCATTCATGATGAGGTCAGAAAGAAAC
GAACAACTTGAGCGCGTGTTATACAGGCGTGTCAGGGGCGGGGAACTTCG
GGGGAATCGGTTTGCCCCGCTGCTCCCCTCCCCGCCAAGGAGTGTGTTCA
TTGAATCATTTTTCATGCTCTGTTCTCGCAGGTCATTAGTGAAGCACAGC
AGAAAAAAATCTGCTCGCGAGGATGAGAAAGCTTTTGTTTGTTTGCTTGT
CCTACCCATTGCATACAGTCGGAGAAAATGCACTGGCGGCATCATCGTAT
CATGAGGGCGCCACTGGAGCCTTGAGAGTGACTTCCAGCCACTCTAAAAG
AGTGGCTTGCCCAAAGGTCTTGAGCACACTGTTTTTTTGTCTTGTAGTTC
CTCTGTCCCATACGAATGTATCATCATGATTGTTTATTAATCTTTGGCAA
ATTTGATGTTCACAATTTCCGAGCATACCGTTCGAAACCCATAACTTCAA
CCTGCACACAAATATCTCGAGTTTAGTTTTCAGTGAAAAATAGCTAAAAA
AATGATACTTGCACCGTACCTGCTTTTTTCGGAATTGAAAATTTTATTTA
GAAACAAAAAATCGACCAAAAATGCCAAGAATAATGGTCAATTGGCGATA
TCGTCTCAACGAGGTTTGCGATTAACAAATCATTTGTGTTGGATTCGTTG
GCATCCAGGAAGCAAATTCATTCTTCTGTGTTCACATCCCTTCCATCAAG
CCACCAATTCGTCCCCACGTTGAAAGCGGCCCTGTCTGTCTGCAGATGGG
ACGAGATTATGACCCTCCATGTATTTCTAGCAAAAACTCCTGTGCTACCA
GGTGCTGTGTGCCCCAACTCCCCTCACCAGTCTAGATGGTATTACGGAGT
GTAGTCATTCATTTTGTAGGGGAGTGATACGTATACTATACTCTAATTTT
GGTCGAAGCATTGTTCCAGGTAACCCTGGTGATAAAATGGATACTCGGGG
AAACTACCCGATTTCCTACACAAAGCGTGTTCTAAGGATGTTATCCCCTT
TAGACTACACTGCCTGTTCGGCACACCTGTCCATGTTGGCCCAGTGGGAA
TTTTTAGCGGCCATGGCGGTGGTTGATCGGCCCGGTGGGAACCATTGTGG
TGACTAGTTGGCCCCGTTGATATTTTCGGCAGCCACCACGATAGCTGATT
GGCCAGGCCGGACAGGTGCAGAATCCTGTATCATGAGGAACGCCGGATTC
GTTTGAGTTTCCGTGATTTGTCTCGATTTTGCCTTCACCTACGGAACCAA
TAATCAAATTTTGATCCCCGAGAGAGGAGTGGTATATAGTGTTAATTCTA
TTTAGCATTTTCCGCTCTACCTGTACGCGTGGTTTTCGCCTTGAGAGATT
TTCAAAACTCGAAACGTCTGTTGTGGCGCTTGCCACGGTTCTGCACACTA
CTCGTGATATCAAGCGAACTATTAATTAATCACAAAAATCCTCTGGTTCT
GTTTCTCCCTCCGTCACGCCGGAGGGGTTCGGTTTTCACTTGTCCAATGA
TGACACAGTATCATATGCTGACGATGAAGAGCACAAGTTACGACACCAAC
CAACAGTTTATTGAGAGATTCGACCTGGATCTCGTGACTCTGACAAGCAA
CCTTCCGTCATGGTTTCAGGAGCACCTGGCTATGCTGGTAAGATGGGTGG
AGGGCGACTACTGCCGTCGGATTGGTCAGCATTGGGGTGGGGGTGTTCAG
TAGACGAATTGATGAAGTGAACAATTAACCAGAAGCGCTGACTGTGTAGT
TCAGTAATTCGTCGTGTGAGAAACTGTGTATTGTACAAACGTGCATGTTC
AAGATCAGTTTCTATTTCCGTTGCCCAGCTGGGCAAGCTTGACCAAGAAG
AAAAAACTAGCTCGTACTCTGCGTAAAAGACACGTGACGTGGTTTTTCGT
AAATTGTATTTCTTGCGACTATGTGTAATTACAACTTTCGTTTTTTTGCA
AGCCTTGCCATTGAAGGATGAATTGGGCGAAGCCTGATCAGGGTGCTGTG
TAGAGTGGTAGCAGCAGGGACTTTAAAGACAAGTTCCACCTTTGAACGGC
AACTCTTCGTCCCTCCCGACCACATCCTGTGTGTAAACAGGAAGCAGAGC
ACAACGCAGAAGAAGAACTTTCAGAGAGAGACGCACAGCGGTGCCGAACA
GCTTGGACAAGAGGCTTTTCGTCGTCGGGAGAACAGAGGTCTCCCGCTAC
TGCCGTGGCAAGCCGACCATCATCGATATCAGATGATGTAGATGCTCCTG
TCACCCCTGCGACAACCAGGAAAACCGAGGATGACCCACCACCGCCATCC
CTGCCGTCACCGCTAAGCGAAGAAATATCTGCTAGTAGCGACGTCCAGAG
TGACCTTCAAAAGCTGGATGTTGCCGAAGACCCGGAGCGTGTAAATGGGG
AATCGATTAGGCTGCGAGGAGTGGAGGACGGGATCCTGAGGAAGGTGCCC
GCACGAAAGGAGAGTGGGGATAGGGTGCCATTCCCTGCAGAGCGGGGTGG
AGTAACGGAAGTTGTGCCCGACTATCGATTGAACGCTTTTGTATATTTGT
GTCCGTTAGTGTCCGAGGGGTGTAAATTTACTGCTAAGGCGTGGCTGCAA
GACGAAGATGACTAGGATTGTGCATCGGTCGGATTCAACTATGTAATATA
TTTATATCGAGCCGATGTACCCACATTATGGTGCCTTTTCGGAGAAAATA
TCAGCTCTTGCGGGGAAGTGCCAAACAAGTGACGCTGCCGGCAGGTGAGG
CTCTGCCGGAGCCCCCTCTCCGGGAAGGCGCCTCCCGCGCAGCTCCCTCC
GGAGGGATTTTTTTGCGACGTCAGGCGTTTTTCTTTTGGCGAGATCGTCG
TGCCCAAGTTTACTGCCTCGCTATCTGGTACGTGGAGCATGCATGTGTCG
GAACGAGAAAAATAGGAATCCCAATTACAGCAATTGCATCGTATCGCCAC
GATAGAAGAGATTGTGTATTTGGGGGTGGGTGCTTGTCTGTGTTTTGAAG
GAAAAAGCAATCGTCGATATGATGGTATGGTGTCATTGTTCACTTTGTCA
CACAGCCCCCTGTTGAGATAAGATACTCTACGGAATAATGTCATGAGAAA
ATAACAATGGACTTAGTGATGACAGTATCGTAGACAGTATCGCAGATGTC
CAATACTGGTGATTCAGGGTCAAATATTATTCTGATTATATTCTTGTTGA
CTGAGAAGCAGCGGGGATGTTGGTAAAATAAGTTGATACCAGAGAAGGAT
CTAGGAATGATGCAGGTAGTTAGCTTTAGTTCGAGAAGTGGATTTTAGTG
ACCGGGGTGTTGCGGGACGTTACGCGGGACATGCGGAAATATGATACCGT
AACGAGAACAGCGAGTATGCACCAGCAGCAGCACCCACTGCCGCTCACTC
CTGTTTTCTCCCACCCAAGATGCCGATAAGCCTGAGTTTCCAGCCTAAGA
AGTGAATCTAGGTGTCTGCAGAGTTGAGTCCCGTGTGAGTCGGACTTTTG
TTGGATTGACCGCGATTGGACCACCGGTGCCGTATCGCATACCAGTTAGA
ATCGGGTTTACGTTTGTATGGGGGAGTATAATGAAAGGAAGGAAGCCGTG
CAGAAATTTCTTGTGTGAAACTATTGCCCTGGACACGCCAAAGACTGTCA
CATCTGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8461:998..5455-

>mRNA_H-paniculata_contig8461.16457.1 ID=mRNA_H-paniculata_contig8461.16457.1|Name=mRNA_H-paniculata_contig8461.16457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig8461:998..5455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACTCCTGGACAGATGTTACTCCTGGACAGCTCTTCGGAATGTGAG
GTGGCTTGGCTCATCGGATGTCTTCGGCGGCTGCAGCATTGGAGCATTTG
CGCCATTCATGATGAGCTCTTCGGAATGTGAGGTGGCTTGGCTCATCGGA
TGTCTTCGGCGGCTGCAGCATTGGAGCATTTGCGCCATTCATGATGAGTA
TCATATGCTGACGATGAAGAGCACAAGTTACGACACCAACCAACAGTTTA
TTGAGAGATTCGACCTGGATCTCGTGACTCTGACAAGCAACCTTCCGTCA
TGGTTTCAGGAGCACCTGGCTATGCTGTATCATATGCTGACGATGAAGAG
CACAAGTTACGACACCAACCAACAGTTTATTGAGAGATTCGACCTGGATC
TCGTGACTCTGACAAGCAACCTTCCGTCATGGTTTCAGGAGCACCTGGCT
ATGCTGGAAGCAGAGCACAACGCAGAAGAAGAACTTTCAGAGAGAGACGC
ACAGCGGTGCCGAACAGCTTGGACAAGAGGCTTTTCGTCGTCGGGAGAAC
AGAGGTCTCCCGCTACTGCCGTGGCAAGCCGACCATCATCGATATCAGAT
GATGTAGATGCTCCTGTCACCCCTGCGACAACCAGGAAAACCGAGGATGA
CCCACCACCGCCATCCCTGCCGTCACCGCTAAGCGAAGAAATATCTGCTA
GTAGCGACGTCCAGAGTGACCTTCAAAAGCTGGATGTTGCCGAAGACCCG
GAGCGTGTAAATGGGGAATCGATTAGGCTGCGAGGAGTGGAGGACGGGAT
CCTGAGGAAGGTGCCCGCACGAAAGGAGAGTGGGGATAGGGTGCCATTCC
CTGCAGAGCGGGGTGGAGTAACGGAAGTTGTGCCCGACTATCGATTGAAC
GCTTTTGTATATTTGTGTCCGTTAGTGTCCGAGGGGTGTAAATTTACTGC
TAAGGCGTGGCTGCAAGACGAAGATGACTAGGAAGCAGAGCACAACGCAG
AAGAAGAACTTTCAGAGAGAGACGCACAGCGGTGCCGAACAGCTTGGACA
AGAGGCTTTTCGTCGTCGGGAGAACAGAGGTCTCCCGCTACTGCCGTGGC
AAGCCGACCATCATCGATATCAGATGATGTAGATGCTCCTGTCACCCCTG
CGACAACCAGGAAAACCGAGGATGACCCACCACCGCCATCCCTGCCGTCA
CCGCTAAGCGAAGAAATATCTGCTAGTAGCGACGTCCAGAGTGACCTTCA
AAAGCTGGATGTTGCCGAAGACCCGGAGCGTGTAAATGGGGAATCGATTA
GGCTGCGAGGAGTGGAGGACGGGATCCTGAGGAAGGTGCCCGCACGAAAG
GAGAGTGGGGATAGGGTGCCATTCCCTGCAGAGCGGGGTGGAGTAACGGA
AGTTGTGCCCGACTATCGATTGAACGCTTTTGTATATTTGTGTCCGTTAG
TGTCCGAGGGGTGTAAATTTACTGCTAAGGCGTGGCTGCAAGACGAAGAT
GACTAG
back to top