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Homology
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: D7G8S5_ECTSI (V-type proton ATPase proteolipid subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S5_ECTSI) HSP 1 Score: 248 bits (632), Expect = 5.830e-74 Identity = 137/164 (83.54%), Postives = 145/164 (88.41%), Query Frame = 3
Query: 120 LETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYCSA 611
+ETCPSSA+FFG+MGVAS+MVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSG+I P+D GN FSS+SGYAFLAAGL CGLSG DAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQ SY C +
Sbjct: 1 METCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGAIGMPSDTGNTFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQQSYSCDS 164
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: A0A835Z1C3_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C3_9STRA) HSP 1 Score: 233 bits (595), Expect = 1.450e-68 Identity = 133/167 (79.64%), Postives = 143/167 (85.63%), Query Frame = 3
Query: 111 SISLETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPP-TDEGNAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYCS 608
S SLETCPSSA+FFG+MG A+A+VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL GSI+ P T++ FSS+SGYAFLAAGL CGLSG DAGVRAVGQQERLFVGMILILIFAEAL LYG+IVALILSQ SY C+
Sbjct: 2 SSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 168
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: F0YK80_AURAN (V-type proton ATPase proteolipid subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YK80_AURAN) HSP 1 Score: 220 bits (561), Expect = 1.230e-63 Identity = 128/168 (76.19%), Postives = 140/168 (83.33%), Query Frame = 3
Query: 114 ISLETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNA----FSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYC 605
+S ETCP+SA FFG+MGV SA+VF NIGAAYGTAKSGVGI+SMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL G+I+ P D G+ FSS+SGYA+LAAGL CGLSG DAGVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ S C
Sbjct: 5 LSTETCPTSAPFFGFMGVTSALVFANIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGAITKP-DAGSGGTTKFSSFSGYAYLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSADC 171
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: A0A7S3GT47_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT47_9STRA) HSP 1 Score: 220 bits (560), Expect = 1.770e-63 Identity = 122/166 (73.49%), Postives = 142/166 (85.54%), Query Frame = 3
Query: 114 ISLETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEG-NAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYCS 608
+S ETCP+SA FFG+MGV +A+ F NIGAAYGTAKSGVGI+SMGVM+PGLVM+NIIPVVMAGVLGIYGLIVAVI+ GSI+ P+ +G +SS++GYA L+AGL CGLSGL GDAGVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ S+ C+
Sbjct: 5 VSRETCPTSAPFFGFMGVTAALCFANIGAAYGTAKSGVGIASMGVMHPGLVMKNIIPVVMAGVLGIYGLIVAVIIQGSITVPSADGATKYSSFTGYAHLSAGLCCGLSGLXXXXXXXXXGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSFSCA 170
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: A0A7S2RWN8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWN8_9STRA) HSP 1 Score: 214 bits (544), Expect = 2.500e-61 Identity = 119/161 (73.91%), Postives = 135/161 (83.85%), Query Frame = 3
Query: 123 ETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYC 605
E CP+SA FFG+MGV++A+VF NIGAAYGTAKSGVGI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVIL+GSI+ P + + FSS+SG+AFLAAGL CGLSG AGVRAVGQQE+LFVG+ILILIFAEALGLYG+IVALILSQ S C
Sbjct: 4 ELCPTSAPFFGFMGVSAALVFANIGAAYGTAKSGVGIASMGVMKPNLVMRNIIPVIMAGVLGIYGLIVAVILNGSITKPANNESKFSSFSGFAFLAAGLCCGLSGXXXXXXXXXXXXAGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSQQSVSC 164
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: A0A7S2WSL7_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WSL7_9STRA) HSP 1 Score: 214 bits (544), Expect = 4.240e-61 Identity = 121/174 (69.54%), Postives = 142/174 (81.61%), Query Frame = 3
Query: 105 MSSISLETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSI-SPPTDEGNAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYCSA*NKQ 623
+S E+CPS A F+G+MGVA A+V NIGAA+GTAKSGVGI++MGV NPGLVMRNIIPVVMAGVLGIYGLIV+VI+ GSI S + N +S Y+ LAAGL CGLS L+AG AIGIVGD GVRAVG+QE+LFVGMILILIFAEALGLYG+IVALILSQS + C + ++
Sbjct: 6 LSDFEFESCPSYAPFYGFMGVACALVLSNIGAAFGTAKSGVGITAMGVSNPGLVMRNIIPVVMAGVLGIYGLIVSVIIGGSIASARPQKNNMYSMYNAMKHLAAGLCCGLSCLAAGTAIGIVGDTGVRAVGRQEKLFVGMILILIFAEALGLYGLIVALILSQSGFTCGSIEEE 179
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: A0A4D9DE12_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE12_9STRA) HSP 1 Score: 213 bits (543), Expect = 5.150e-61 Identity = 116/168 (69.05%), Postives = 139/168 (82.74%), Query Frame = 3
Query: 120 LETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNA----FSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYCSA 611
LE CP+SA FFG+MGV +A+VF N+G+AYGTAKSGVGISSMGVMNPGLVMRN+IPVV+AG+LGIYGLIV+VI++G+I+ P G+ +S YSG+A LAAGL+CG +VGDAGVRAVGQQERLFVGM+LILIFAEALGLYG+IV+LILSQ + YC A
Sbjct: 9 LEKCPASAPFFGFMGVTAAIVFANLGSAYGTAKSGVGISSMGVMNPGLVMRNVIPVVLAGILGIYGLIVSVIITGNIAAPASVGDTLQTKYSLYSGFAHLAAGLACGXXXXXXXXXXXVVGDAGVRAVGQQERLFVGMLLILIFAEALGLYGLIVSLILSQQNVYCQA 176
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: A0A7S2GLL8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLL8_9STRA) HSP 1 Score: 212 bits (539), Expect = 1.730e-60 Identity = 119/165 (72.12%), Postives = 134/165 (81.21%), Query Frame = 3
Query: 111 SISLETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYC 605
S ++E CP+ A FFG+MGV+SA+VF NIGAAYGTAKSG+GI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVIL GSI+ PT+ FSSYSG+AFLAAGL CGLSG GVRAVGQQE+LFVG+ILILIFAEALGLYG+IVALILS Y C
Sbjct: 7 STAVEACPTYAPFFGFMGVSSALVFANIGAAYGTAKSGIGIASMGVMKPELVMRNIIPVIMAGVLGIYGLIVAVILQGSITKPTEGVTKFSSYSGFAFLAAGLCCGLSGXXXXXXXXXXXXXGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSMQIYEC 171
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: B8BTR9_THAPS (V-type proton ATPase proteolipid subunit n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8BTR9_THAPS) HSP 1 Score: 211 bits (537), Expect = 2.640e-60 Identity = 119/166 (71.69%), Postives = 134/166 (80.72%), Query Frame = 3
Query: 120 LETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYCSA*N 617
+ETCP+SA FFG+MGV +A+VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ GSI P + + +S Y+G+A LAAGL CGL GVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ+S+ C N
Sbjct: 1 METCPASAPFFGFMGVTAALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSIVAPQNGLSQYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVCEGDN 166
BLAST of mRNA_H-paniculata_contig8460.16456.1 vs. uniprot
Match: A0A7S3LI96_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LI96_9STRA) HSP 1 Score: 213 bits (542), Expect = 2.890e-60 Identity = 120/165 (72.73%), Postives = 135/165 (81.82%), Query Frame = 3
Query: 111 SISLETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNAFSSYSGYAFLAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQSSYYC 605
S+ +ETCP+SA FFG+MGV SA+VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ GSI P + + +S Y+G+A LAAGL CGL GVRAVGQQE+LFVGMILILIFAEALGLYG+IVALILSQ+S+ C
Sbjct: 51 SVEMETCPASAPFFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSILSPQNGLSQYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVC 215
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 249.2 |
| Seed ortholog evalue | 1.4e-63 |
| Seed eggNOG ortholog | 2880.D7G8S5 |
| Preferred name | ATP6V0C |
| KEGG ko | ko:K02155,ko:K04345,ko:K15542 |
| KEGG TC | 3.A.2.2 |
| KEGG Pathway | ko00190,ko01100,ko01522,ko03015,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04142,ko04145,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04721,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04966,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05120,ko05146,ko05152,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05323,ko05414,map00190,map01100,map01522,map03015,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04142,map04145,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04721,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04966,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05120,map05146,map05152,map05165,map05166,map05169,map05200,map05203,map05205,map05323,map05414 |
| KEGG Module | M00160,M00695 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006826,GO:0006873,GO:0006875,GO:0006878,GO:0006879,GO:0006885,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0006996,GO:0007033,GO:0007034,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019899,GO:0019953,GO:0019954,GO:0022414,GO:0022603,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030139,GO:0030141,GO:0030177,GO:0030587,GO:0030641,GO:0030659,GO:0030666,GO:0030667,GO:0030670,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033227,GO:0033365,GO:0033572,GO:0034220,GO:0034613,GO:0035577,GO:0035751,GO:0036230,GO:0036442,GO:0042119,GO:0042221,GO:0042582,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043434,GO:0043492,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045055,GO:0045169,GO:0045184,GO:0045321,GO:0045335,GO:0045851,GO:0046903,GO:0046907,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0055065,GO:0055067,GO:0055070,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0070838,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072512,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090662,GO:0090702,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099131,GO:0099132,GO:0099503,GO:0101002,GO:0101003,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600 |
| EggNOG free text desc. | ATP hydrolysis coupled proton transport |
| EggNOG OGs | COG0636@1,KOG0232@2759 |
| Ec32 ortholog description | V-ATPase proteolipid subunit C-like domain |
| Ec32 ortholog | Ec-22_002820.1 |
| EC | 2.7.11.11 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036 |
| Exons | 4 |
| Model size | 2494 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8460.16456.1 >prot_H-paniculata_contig8460.16456.1 ID=prot_H-paniculata_contig8460.16456.1|Name=mRNA_H-paniculata_contig8460.16456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MSSISLETCPSSASFFGYMGVASAMVFGNIGAAYGTAKSGVGISSMGVMN
PGLVMRNIIPVVMAGVLGIYGLIVAVILSGSISPPTDEGNAFSSYSGYAF
LAAGLSCGLSGLSAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALG
LYGMIVALILSQSSYYCSA* back to topmRNA from alignment at H-paniculata_contig8460:4159..10429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8460.16456.1 ID=mRNA_H-paniculata_contig8460.16456.1|Name=mRNA_H-paniculata_contig8460.16456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6271bp|location=Sequence derived from alignment at H-paniculata_contig8460:4159..10429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAGCCGTTTTTCTACCATCTACTTTCTTCGGTTTGCGTGGGGTTGTT
AGTTGTTCTTTTTGGCAATTAGAGGCAAGGAGCAAATACCAACAGCCTGG
AATAATGTCGTCTATCTCGCTTGAGACGTGCCCTTCGTCGGCCTCTTTCT
TCGGCTACATGGGGGTGGCTTCGGCTATGGTCTTTGGCAGTGAGTATATC
ATGTGAAACACATGCATCGCAAATATGCGAAGCTTTTTTGGCGAAGGCTT
TTGTGTTAGAGGCTGTTGTGTTGCGATGACATGGGATGAGCCTATGGATT
GCTCACTGCCAACGGCATTCTTAGAGCAGCTTTCTCTGATTTTTACTGAA
TGCGTGTTTCGTGCGAAGGTTACAGAAGAGCTAATGGCCGGTTCGTCTTG
TGAAGCTTTCTACAAAGGCGACGGTGGTTTGCGGCCTGTACAGATTACAC
TTTGTGTGCATGCGTATGTAGTGTGCAACTCGTTGCCCAACGGTCGTCGA
ACCTGTCAAGTATTGCGTAGCGTGCCAGTGTAATTGGATAGCGTGCCTTG
GACTCTAGTGCGTTTCAAGGTTTGTCTTTTTCGGGTCCCACATTACTTTG
AAGAATCAAGGGGAGAACGGTTCTTGACAAGTCGGTGCGTACGGCCAGAT
GTTGCTCGTTTCTGAGGCAATCTCAGTATCTGTAAATCACGTCCCACTGA
TCGAGTCTAACGCGAGAGGTCAGCAAGGGCCCCAAACGCCCATAGCATAC
AGTTTTGCTTTGTGCATTATTGTTCCGCAAGAAGTTGCCCAAATGCACCA
GCAATATCTCAGGAAGATGTTGGATTATTGACCAGCGTCGGATCAAAAAC
ATCGTATTGGGAAATGGTGTTCGTCAACATTTCACCGTTTGTATCACAGT
TTGGTGATTGTGTGTATTGGGGTCCTTGAAAATTCATTTGTTTAGTTCCT
TCCTTCGCAGTTGGTGGCCGTTTGCGCCTTCATCTCGAAGTAACATTTTT
TGTCACAGATCGTGCCGTTATATGCCTCACCGAATGTAAGACTGCCCCAG
CAGCGCATGCGGATCTAATTCACTTGTGGCGAACAGGCGTGAGTAGTGTA
ACCAACTCCTCATTCCGTCGAGCCCTACCATGCATAATGCGCAAAGTACA
TACTAAACCACCAGTTTTTTTCTGCCATCGCACGATGGTGGCAAATAGAA
GGAGAATGTAGCCTTCATGAACTCGACCTTCGTTTACACAGAAGGTTGTG
CGTGATGATAAGTATTGGTCCCCATCCAGATCTAGAATTTTATGACACTT
GAGAGGCAGTAGGCACCTCCTGTTCCCATGTGTTGCATACAGGAACGGTT
ACTGCTTGTCTGAAGTCCTGTCGATGAATGACTGCGGGTTGTCGTTACAC
ATTGGCCTCTGTAGATTAAAATTAGAGGTCCCTTCGCCCCGACATGCATA
CGTATTACGGACGGTATAGACGGGAGTGGTCGGGGGGTAAGGAGTAGTGC
CGTTACCCCTGCGGATTGGGATACCCTTGGATGGGAGATGATGGGAGTGT
CCGAGGACGAAGGAGCGAAGCGGTATTGCATTCAAACCAGCTATGTTGAA
TATTTTTGGGTACGATTCTACATTTGTATTGAGATGAGGTGTTTGTTAGT
TGCCTTGGGGGCTCTTGGGGACTGAAATGGAAATGTTTTATGAACGGGGT
CATCGGGATTCTAACTCATGATGTCGATCCGTGTTCCTCTCTTTTTATCT
GTGGCGGTCTTGGTAGAAAAGGTCTCCCTGAACGCTACACGGCCTGTAAA
TACTACGGGTCTAGGGTTAACATGTGTTGATGTGTTTGGAAAACATCGTA
ATGTCCAGTTGCCTGTCCTGACCTGACACGCACAGTCGAGACAAGACAAT
TGAGTGAGAGGCTGTAATGTGCCCGTCTTGTGTCCAAAACACGACGTGGG
GTGATGTTTTGAACTCTGCAAGCGAAAAGACATATCAGTGAAAGGCAGTC
ACGGCTTTAGTCTGAAGACGCACATGCGTTAAACTCGGCGAGTGTAAGTA
TTTCATGTTGACTGTGTTACTACCGTCGAAACAGATCGAAATGCTTGATG
TAACAAGCAGTCCTTGAAAAACTCGTAACTGTCACAGGTATCCATAAATT
CATCTTAATTATGTTCTTTCCTAGCTAAAAACGCACTTGCTAGGTTTCTC
GGGGCCTTTCGGCCTGGTGCTGAGTACCGGATAGAGGAGATGCCCAAGTT
CTGGAGTAGTGAAGTTGCTGTAGACAAATGTGGGGGGTCGAAGTAATTAT
TATGGCAGGGCATACTACCATTTACTACCGGCTTCTTGTGCGATAACAAT
AGAAGACGCATAAGCCACAAATACCAAACCGAAATCCATGACCGATTTGT
GTTCGTTATTCGTTATACCTACAGTTCGCGAAAATGTCGATAAAATAGCA
CAAGTTCGCAATCGTATCTCTCTCTGTCTTACACCACTCTTGTTGTAACA
TTCTTTGCTGTGGCTTTTTCCGGTTTTCGCAGACATCGGGGCCGCGTACG
GAACTGCCAAATCGGGTGTCGGTATCTCTTCAATGGGTGTGATGAACCCT
GGACTGGTCATGCGAAACATCATTCCTGTGGTTATGGCTGGTGTTCTGGG
GATCTACGGGCTTATCGTAGCTGTCATCCTCTCTGGTTCAAGTGAGTTGA
CTGGGCTGAGCGGTCGGGTTGTTTCAGGATTTTAATATTATACTCGTGAC
AGCAAGTATTTTGGGCAGCAAAGGGATGGTTCTTGTATTTAAAACATGAC
TTTTTTTCATATTTGAGCCCTAGCGACCGCATTCGGTCATCGATTCATGG
AACAGCTCTTTGAAGGTTTGAATTTGGACCTTTGCCCACAATAAACACAC
TTTGGATATTTTCCGAATTCCTAGAGTTTGATGGAGAGTACATTTCTTTT
CAATGATTGTATGCTGCTTCTCAATAATTGGTCCAGTACACGTGAAAGCG
AGGTTGTGTGTACATGTAGGACAGAGAAAGTTAGGAATTACATTAATTCT
ACGATATCACCATTAGGTGTACACATATATCGAGCAATTCATCAGAGGAG
CATTAGAACGCCCTTCGGAGCCTATATATACCGAGTATGTAGCAGAAGAA
CTATACCTGGTACTGTCATCGCTACTCATGAACTTACTCCCTTGGTTTTA
AAGTGTTGTATCGTGCTGGCTTACTGGGGGAGGCAGGAAGAGGTGATACT
GTATATATTTTTTCCCTTCAAGTGTAGTTCGTTGAAAGTGATCAAATCCG
GCTGTGGTGATGAGCCTGGATTTTAGGATGCAAGCTGGAGTCGAGTCCAT
CAGCTTTGAACACTGGTTGTGGCCGGTCCCTAATCGCGTCAAAGTTGGAC
TGAGGCAGCATCCGTCCACTGGGAGACATCGTGGAAGAATGTCCCTTTCA
GCACTAACATACTTTTCTGTACTGACACGCTGATTTGTTTTTCGTCCTAT
TGCCGCAGTCTCGCCGCCAACCGACGAAGGCAACGCATTTTCGTCATATT
CTGGGTACGCCTTCCTTGCAGCTGGCCTCTCATGTGGTCTCAGGTCAGTT
GGTCAGACAGAATTGCGAATGCGTCCACAAAAATATGTTTTTATTGCTCG
CATGTGTAACGCTTTTCCGTTACGTCCTCGTGAGCAGGTCTTTCTTGATC
ATGTCATACCAATAATATTGGGTACAAGTCACCTTAGATGGGATTAGAAA
TTACTAAACTAAATGTGCAACGCGTAGCGCACAGCACACGACGCTACTGT
TGCCACCATTTTTTACCGCTGAAGGGTAACATCTGTTGGGTTGGGCGCAT
GATCACGAGTGTGTAGGTCAAAGTCTGTCACTATCCGGGTACTGAGTCCC
AACACGTGTGCTATTAGATCAGGACTAGGGGCTAGATGACTGATACGGTG
GGGAAATTATTCGTATTTCGATTTTCGAAGTCATGCTAGCGAGGTTGGAG
TTTTTACGAGGAGGGTCTCGTACGGATGCCTGATGGGGTGCCCCATTGGT
CATCATCGAGTTGACACTGAATCGAGTTGGGTGAGCGGGTAACTCAATAC
GAAAACAATGCCAGGAAATGTCCGGAGCTATGCTGATCGAGCCCGGCATG
TTTTACGTAGACTATGACTACTGTCCTCATGTTTTATTGTTCCGTTCTTG
CTTCCCGCAGTGGACTGTCGGCGGGTATGGCCATCGGGATCGTGGGGGAC
GCAGGAGTACGCGCCGTAGGACAGCAGGAGCGCCTATTCGTGGGAATGAT
CCTCATTCTCATCTTCGCAGAGGCCCTAGGACTTTACGGAATGATCGTAG
CCCTTATCCTGTCACAGTCGTCGTACTACTGCAGCGCCTAAAATAAACAA
ACTTTAGTCGTGTCTGTTTTTTGTTTGGATTATTCTGTTCCCCGGCTTGT
TTACCGACATGCTCACGTGCGCGCATAATAGGCGATTCTCGTGAGTGGAA
AAAATGATGTCACTGGGTATTGTGGGAGGGAAGTGAGGCATAGACAACGT
CGAACCGAACAGAACCGAATCTGGAGTTGGGCCGAATCCCTGTGGTGGAT
AGCAACAAGGCCGTTATTTAGATTCGTCAGGGTTTTTCGTGACCGAGACA
AATAGTTCCATATCACTCTAGATTTTAATATTCTTTTGCTCTTGTTTTCT
ATCCGCAATCCTCCTTTTCTCGATGGCTTTTTATTTTGTGCATCGAAAGG
CTGACCGTCGTGGGACGGTGTGGCTTGTGGCGCGGTTGGTGTATGTACTG
GTCCGCCGCGTTACATTGGGTTATGGACGTAGGCTCTCCATGTCCTGTAT
CCCCCACGAAGTGCTTTTGTTTGTACTTACGTTCTGCTGTTTTTTCTTTT
CGCTTCCCGCGCACGCAAGCCTTATTAATTAATACTATTGTTTTTTCACG
GGGAATGGAGCAAGACGGGAGGTTTGTGGTAAATTATTCCTAATAATAAT
CCTTGCCGAAGCCTGTGATTTTTGCAACCATGTGTACAGTAGGTGGCGAG
ATGGGTTTTCGTCTCGGATTTGTCTGCTGGGTAGGTCGGGTAGGTCAGTA
CTGTGTCCTCATTTGAAGTGGCGATGTTGTGAATGGAAAATAACAAAATA
CGACCGAGATGGTTGCCCTCATCACGCGAAGAGGGTTCAGGCACGGGGGA
GGCGTTGAGGAGACTTCTTTTCGCTTTGCTAGACGTAATGAACCGAATTG
CGTCTGTCCCCAAGAAGAATCCTATTTTTGGAGAGGGAATTGCAGACCTG
AGGGTGCCGAGCGACATAAATTGCAGAAACATGTGTTTCATGCAGAGTCG
ATTTGAAGTGGCGATAGGAACTATGACTAGTCAACACCGATTCTGGCATT
TTGTACCAGATGAGGGAGCTAGTCACGGGGCAAAATACTTTGCTACTAAA
ATTAGGACAACTCGTTAGGATTCTACATTGGAAATAATGCCACATAAGCT
TATTTTCTCCTAATGAATGATGTCTTTTTTGCGTACATACCTGACAGTAT
TCATGGCAAAATCACTAGCGTTGAATCAATATACATGGATTCTTACTCAA
TTATTCACTGTGAAAACACTCCAATATACGTTCAGAGAGAAAGACACAAA
TTATAGTGTTCAATACACACCATCATATGTTACCCATATAGGAAAAGTTC
CGCCGCAATCTTTGCACGATGTAGACCCCGTCACCCTCTTGAACCCGGGT
GCCTCATATAAAATGGGGGCTCTACGCGAAACGTGAAGACGAGTTAGAGA
TTACTAACTCGACACACCCAGTCTATCGTTGAATCGGTACCTCTCAGCTC
GATCGTTCTGGACAGACTGTACTTGATACATTTCGAGATATACCTTGATG
AATATTGAATGTGTACGACGTGGTATTGGCCAAATCCTGTACATTATAAT
AGCCTGCTGATGTGTAAGCCTCACAATGAAGGAGATATTGGTGCTGAAGC
AATTAAGGATTTGGACTTCACCTGATCTAAGAGATTCATATCGCCGGAGT
TTAGCGCAAGTAACAGTGTGTATTAGAAATTAGGATTGCCTTTTTCTTCG
AAAATAGTTGAGTTATAATATGCTCGATATATTCCATCCCCAATATCCAT
TAGGCTTGAAATATTCCTCTCTTCTGCAGGGATAGAACGCATCTACTTTC
CCATTCGAATGGTTACTGCCTCTACGTGGCGGATGGAATCAACTCAACCC
GGGGTAACTCCCTAACCCTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig8460:4159..10429+ >mRNA_H-paniculata_contig8460.16456.1 ID=mRNA_H-paniculata_contig8460.16456.1|Name=mRNA_H-paniculata_contig8460.16456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig8460:4159..10429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTCTATCTCGCTTGAGACGTGCCCTTCGTCGGCCTCTTTCTTCGG
CTACATGGGGGTGGCTTCGGCTATGGTCTTTGGCAATGTCGTCTATCTCG
CTTGAGACGTGCCCTTCGTCGGCCTCTTTCTTCGGCTACATGGGGGTGGC
TTCGGCTATGGTCTTTGGCAACATCGGGGCCGCGTACGGAACTGCCAAAT
CGGGTGTCGGTATCTCTTCAATGGGTGTGATGAACCCTGGACTGGTCATG
CGAAACATCATTCCTGTGGTTATGGCTGGTGTTCTGGGGATCTACGGGCT
TATCGTAGCTGTCATCCTCTCTGGTTCAAACATCGGGGCCGCGTACGGAA
CTGCCAAATCGGGTGTCGGTATCTCTTCAATGGGTGTGATGAACCCTGGA
CTGGTCATGCGAAACATCATTCCTGTGGTTATGGCTGGTGTTCTGGGGAT
CTACGGGCTTATCGTAGCTGTCATCCTCTCTGGTTCAATCTCGCCGCCAA
CCGACGAAGGCAACGCATTTTCGTCATATTCTGGGTACGCCTTCCTTGCA
GCTGGCCTCTCATGTGGTCTCAGTCTCGCCGCCAACCGACGAAGGCAACG
CATTTTCGTCATATTCTGGGTACGCCTTCCTTGCAGCTGGCCTCTCATGT
GGTCTCAGTGGACTGTCGGCGGGTATGGCCATCGGGATCGTGGGGGACGC
AGGAGTACGCGCCGTAGGACAGCAGGAGCGCCTATTCGTGGGAATGATCC
TCATTCTCATCTTCGCAGAGGCCCTAGGACTTTACGGAATGATCGTAGCC
CTTATCCTGTCACAGTCGTCGTACTACTGCAGCGCCTAATGGACTGTCGG
CGGGTATGGCCATCGGGATCGTGGGGGACGCAGGAGTACGCGCCGTAGGA
CAGCAGGAGCGCCTATTCGTGGGAATGATCCTCATTCTCATCTTCGCAGA
GGCCCTAGGACTTTACGGAATGATCGTAGCCCTTATCCTGTCACAGTCGT
CGTACTACTGCAGCGCCTAA back to top
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