mRNA_H-paniculata_contig8460.16455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8460.16455.1
Unique NamemRNA_H-paniculata_contig8460.16455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8460.16455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8460contigH-paniculata_contig8460:2..3870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size764
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8460.16455.1prot_H-paniculata_contig8460.16455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8460 41..3856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.877348-UTR-H-paniculata_contig8460:1..401622931062.877348-UTR-H-paniculata_contig8460:1..40Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8460 2..40 -
1691481572.9590397-UTR-H-paniculata_contig8460:1..401691481572.9590397-UTR-H-paniculata_contig8460:1..40Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8460 2..40 -
1622931062.9102464-UTR-H-paniculata_contig8460:3856..38701622931062.9102464-UTR-H-paniculata_contig8460:3856..3870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8460 3857..3870 -
1691481572.9875715-UTR-H-paniculata_contig8460:3856..38701691481572.9875715-UTR-H-paniculata_contig8460:3856..3870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8460 3857..3870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.8882565-CDS-H-paniculata_contig8460:40..2501622931062.8882565-CDS-H-paniculata_contig8460:40..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8460 41..250 -
1691481572.9682982-CDS-H-paniculata_contig8460:40..2501691481572.9682982-CDS-H-paniculata_contig8460:40..250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8460 41..250 -
1622931062.8984072-CDS-H-paniculata_contig8460:3355..38561622931062.8984072-CDS-H-paniculata_contig8460:3355..3856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8460 3356..3856 -
1691481572.9774044-CDS-H-paniculata_contig8460:3355..38561691481572.9774044-CDS-H-paniculata_contig8460:3355..3856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8460 3356..3856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8460.16455.1

>prot_H-paniculata_contig8460.16455.1 ID=prot_H-paniculata_contig8460.16455.1|Name=mRNA_H-paniculata_contig8460.16455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp
MCCCRGWPGNKRTHPLWTTARTVARAASAIISIYVALLLSSGAVAQSAAA
ARYYDGDAVALPTSSCGAFVVHQQHEAAFSTHTKTALLYRERLQRRWFRS
KGPSPHGKPWKESCHCSRVVVGVDANPSLGAAAEDAATGSTDNFVPIPTP
AAEAVGELRGTPSLYRQTNNGGGSGDGVGGGGRGGDPNICSMVDLVKLLH
ESEHPVWDLVRFEVKCDNHHAPGKDNYSSRDLRPNG*
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mRNA from alignment at H-paniculata_contig8460:2..3870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8460.16455.1 ID=mRNA_H-paniculata_contig8460.16455.1|Name=mRNA_H-paniculata_contig8460.16455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3869bp|location=Sequence derived from alignment at H-paniculata_contig8460:2..3870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACGGATAGATCATGTGCTGCTGTCGTGGGTGGCCAGGAAACAAGAGA
ACACATCCACTGTGGACAACGGCCAGGACCGTGGCAAGAGCTGCTAGTGC
CATTATATCTATATATGTGGCTTTGCTGCTGTCTTCTGGTGCTGTAGCAC
AATCAGCAGCAGCAGCACGGTATTACGATGGTGATGCCGTCGCATTGCCA
ACATCATCATGCGGCGCTTTCGTCGTGCATCAACAGCACGAAGCCGCGTT
TTCTACACATACCAAAACAGCGCTGTTATACAGAGAACGACTTCAACGAA
GGTGGTTTCGTTCCAAGGGTCCTTCACCTCACGGCAAGCCCTGGAAGGAA
TCATGTCATTGTTCGCGGGTGGTTGTCGGTGTAGATGCGAATCCGAGCTT
AGGAGCAGCAGCAGAGGACGCTGCGACAGGTAGCACTGATAATTTTGTTC
CGATTCCGACACCAGCCGCTGAGGCTGTCGGGGAGCTGAGAGGGACTCCT
TCTCTCTATCGACAGGTATAGTATCCATCGTGGTAGCTCTGTTGTGGTGT
TCATGGAACTCGATCATCTTGCGGGCTATCGTCCTGTGCATGCTTCTGCT
CGTGAGTAACTGCGGAGAGCCAGATCTCGGCTGCATGGGCGATATTCACC
AGGGGTGTTCTCGGGGGGGGGGGGGTGTTAGGCCATCTATCTCTTGTGGG
GTTGGAGTTTTTCCACTCGAATTTATCCACTTTCCGATTTATCCAAGGGT
GCAAAAATCTGATTTGTAATATTCAATTCGTGTTTGCTATGGGGTCGGAT
TTCCGGAAGGTGGTTTTTTATGGAGGTTTGCAGGCGTAGTATTAATAGTA
CAAGCGGCATAATTCAAAACTCAACCACACCCTCCAAGTTTGGGTCCTCG
AGCACACCACCCTCGGACACGCCACCCTCCAGCACACACTCATATCACAA
CTTAAAGAGCGCACGATCATGAGTGCACCGTCAACTGCGATGCATCTTAC
TACAAACCCATGCGTGGAATGGATGTGGAGTGAGATGAAGGCCCAGGGGA
TCAAATCGACCGTCAGCAAGGCACAATGGATGATACTGTAGAATGTACCA
CTGTGGTACGCTTGTCCTGGTGTGAAGCAGAACGGTGGGACCGTGTCAGG
CCAACAGGAATAAATCCGCGGTTGAATTGTACGATACGATCGCAGTTCAC
AGCTCCCTCCGCTGAGTGGAGGAAACCCCCGGGCTACCAGTACCGCAAGT
TCTATATGGTGACGGGTCACACACCTTGGCTTGTCTGTATCCTCGTGGTT
GTGTATTGCTTAAGGCTGTAACATTTCAGACGTTGGTTGAAAAACATTAA
CGCCTTCATATGGTGGTACTCCAAGAAATTCGATACGCGAGGGCAACTCT
GATTTCTGCCAGAAATCGGGGAATGGGACCAGCTGTACCTCCCGTGTCGG
ATTTCTCAACTCAGATTTCCGAGAAATCCAGCCGCATAACATGGGAAATC
GAATTTCTCGGAGTCAAAAAAATCGAAAATCTGTGTTCGACTGGAAACAT
CCCACCCCGTAAGAGATGGCCTAAAGCACCGCGTATAAAACGGGTACTAT
TGAGGGAAACAGTATTCTAAACCACGATAAAGCTACACCCTTTGGGAACA
ATATATCGGCGTTCTTTTTTCAAAGTCCAAGTGGCCGTCGTCTAATTATG
GGTAACAAACGGTATTCGGTATTTCGGGAATAAAACGATGGCGACTTAGA
CTTTGAAAATAGAAACGCGACGATATTGTTCCCAAGGGATGTAACTTCAT
TGTGGTACTTTTAAAATACTGATCCCCTCGACGGTATACGTTTTATACGC
GATTTAAAATATATATACCCGAGAACACCCCTAATATTAATTCTTAACGA
AGACTGCCACAGAAGAGTGCGGTACACAGTAGACACCAATCAGTGAATTA
TATCAGTACGGGTAGCGAAAAGGACGGGGGTTAGACCCACGAACATTTGC
GCACCCGAACTACGCGTAACCACGGCATTGAGATCGTCATACAACTGCGA
CCATCGTTACTCGAAGAAGTAATGAACATCCAGTTGACGTCTGATAGATC
AGAATTGCTCAGTTATTTAATCTTCCAGTAACCCTTCAAGTAACGTCATA
CTCTACCCACCAGCCGGGGTTGTCAATACCACCATATTCACGAACTACGC
AAAAACGGTACGTCACACACAGGTAAAACAACAAACACGTGAGGCCTCAC
AACAAATCGTTCTTATTGTTCACTATTTATATGTTTTGTCGGATCCGGAT
ATAGACCATTCTGATAATAATCCTGTTTATCAGATGTTAACCGAATGGTA
TCATTGATTTATTTGAAAAATATTACCAGAAAATTAATTCGTTATACCTG
TATCATTCTCACCTGTATCATATGCGTCGATCCTACACCTGTAACAGAAG
ATTTATGCAATACCTTAACCTTTAGCGAGCATGGGGTCTCGCGTCACCTC
GAGTTGTGAGGCACTTTGGTTACATCTCGTGTCGTGGGTTATATCTGTAT
CGCAGCACGGTAGAAGACCACGACGAGGACGACCCCCAACGCCAGATCTG
GCGGGGAAGATAACCGACGTTTGTCCAGGCCTCACTTCCATATTTTCTCC
CGCGATCTGTGATTGGCCCTCTCGCTCTATTAGATTATGTATTCATACCG
AATTAGGAAGTAATTACTAAGTACAATAACGTCTGGCTTTGTGCAGAATT
GAATTCATTCATTCACGAGTTACATTTTTTCGTCGTCAGTACAGGCTGGG
CCCACCAAGAAACACCAAAAATGTTCCACAGACCAAATGTCATTATCCAA
AGCGAAAACTACCAGAGAGATGGGACTGCCTGCAACCGTGTAAGTACCAC
GGAGTGCGCCGTGCGCTCTGATCGTCCATCCGAGCACTTTCAACATTTTA
AAGTACATTATAATATGAATGTATGGGCTGCTAGCGGTTGTTTTCCAAAT
GTGTTGATACAAAAGTCAAGTATATTCCATATGTTTCCGATTCATGCCCC
ATTGTTCTCAAAGTTGGTGTGCGTATTGCTGACACCACCACGAGAACCGT
GATATCGGTTTGGGTTCCCAATTCGCCACCGTTTCACAGATATGGCTGAA
GCAAAGTTGGGGTATAATACCTACGTATTTCATTGGGAGTAGGACGTATG
TAATGCTTCTACAAAATGGGTATTTCTCACTTGGTTTTTTGGAGTTTGGA
CCTGAGATTATGACGGTAGGTGTGCATCAAAATCCCGGAGGTCTCTATTT
GTGATACCTTAAAAAAATAACCTTTTTGTTACGAACATTAATACGGATCT
TTGAACCCTAAAATCACTCAAGAGCCATTGTTTTCGCAACAAAAAGAAGA
CAACGGTATCATCAACAGAGCCCTCCGGAATTATGATGCGCACGTACCCT
CAAAATTTCAGGAAAGCCATACGACATCGTTTTACCACACAATACCAAGG
AAATTTAATTACCATACCGTTTTTGCTTGCTGTATTTTTTTCAAATACCA
CTACCGAGGAAACCCTTGATAAATACCTCTAACCCCGGCACTTCGACATT
GATCACCTTTTCCGCTCCAGACGAACAATGGCGGCGGTAGTGGAGATGGA
GTTGGGGGCGGGGGTCGCGGCGGTGACCCTAATATCTGCAGCATGGTGGA
TCTTGTAAAGCTACTTCACGAGTCGGAGCACCCGGTGTGGGATTTAGTGC
GATTCGAGGTGAAATGTGACAATCATCACGCGCCTGGGAAAGACAACTAT
TCCTCCAGGGACCTACGCCCGAATGGGTAGGGTAGCTCGTGTACTGAGCA
TGACTGGAAGTCTAGTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8460:2..3870-

>mRNA_H-paniculata_contig8460.16455.1 ID=mRNA_H-paniculata_contig8460.16455.1|Name=mRNA_H-paniculata_contig8460.16455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig8460:2..3870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTGCTGTCGTGGGTGGCCAGGAAACAAGAGAACACATCCACTGTG
GACAACGGCCAGGACCGTGGCAAGAGCTGCTAGTGCCATTATATCTATAT
ATGTGGCTTTGCTGCTGTCTTCTGGTGCTGTAGCACAATCAGCAGCAGCA
GCACGGTATTACGATGGTGATGCCGTCGCATTGCCAACATCATCATGCGG
CGCTTTCGTCGTGCATCAACAGCACGAAGCCGCGTTTTCTACACATACCA
AAACAGCGCTGTTATACAGAGAACGACTTCAACGAAGGTGGTTTCGTTCC
AAGGGTCCTTCACCTCACGGCAAGCCCTGGAAGGAATCATGTCATTGTTC
GCGGGTGGTTGTCGGTGTAGATGCGAATCCGAGCTTAGGAGCAGCAGCAG
AGGACGCTGCGACAGGTAGCACTGATAATTTTGTTCCGATTCCGACACCA
GCCGCTGAGGCTGTCGGGGAGCTGAGAGGGACTCCTTCTCTCTATCGACA
GATGTGCTGCTGTCGTGGGTGGCCAGGAAACAAGAGAACACATCCACTGT
GGACAACGGCCAGGACCGTGGCAAGAGCTGCTAGTGCCATTATATCTATA
TATGTGGCTTTGCTGCTGTCTTCTGGTGCTGTAGCACAATCAGCAGCAGC
AGCACGGTATTACGATGGTGATGCCGTCGCATTGCCAACATCATCATGCG
GCGCTTTCGTCGTGCATCAACAGCACGAAGCCGCGTTTTCTACACATACC
AAAACAGCGCTGTTATACAGAGAACGACTTCAACGAAGGTGGTTTCGTTC
CAAGGGTCCTTCACCTCACGGCAAGCCCTGGAAGGAATCATGTCATTGTT
CGCGGGTGGTTGTCGGTGTAGATGCGAATCCGAGCTTAGGAGCAGCAGCA
GAGGACGCTGCGACAGGTAGCACTGATAATTTTGTTCCGATTCCGACACC
AGCCGCTGAGGCTGTCGGGGAGCTGAGAGGGACTCCTTCTCTCTATCGAC
AGACGAACAATGGCGGCGGTAGTGGAGATGGAGTTGGGGGCGGGGGTCGC
GGCGGTGACCCTAATATCTGCAGCATGGTGGATCTTGTAAAGCTACTTCA
CGAGTCGGAGCACCCGGTGTGGGATTTAGTGCGATTCGAGGTGAAATGTG
ACAATCATCACGCGCCTGGGAAAGACAACTATTCCTCCAGGGACCTACGC
CCGAATGGGTAGACGAACAATGGCGGCGGTAGTGGAGATGGAGTTGGGGG
CGGGGGTCGCGGCGGTGACCCTAATATCTGCAGCATGGTGGATCTTGTAA
AGCTACTTCACGAGTCGGAGCACCCGGTGTGGGATTTAGTGCGATTCGAG
GTGAAATGTGACAATCATCACGCGCCTGGGAAAGACAACTATTCCTCCAG
GGACCTACGCCCGAATGGGTAG
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