mRNA_H-paniculata_contig8457.16451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8457.16451.1 vs. uniprot
Match: D7FMI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI5_ECTSI) HSP 1 Score: 239 bits (609), Expect = 4.900e-73 Identity = 129/203 (63.55%), Postives = 155/203 (76.35%), Query Frame = 2
Query: 80 AAAPSWMQRQDGMSGERAAMNPMN---PGTGEPSSN-----SSEPEINQVRFAFRVAALVLGALMIVSSFVELFNMSSFTRFCIAIYNILFAAVLMLHESQGFVMCDGVDWNMRRYFGLLYGHMGRAIFIIFIAFLNFALTDAGWWGTCTGLLLLGLGGLMLVVYMQYPHLLDEAPGLGDLKTV-PPRPQGYAPPPAMPSTTL 661
A+ PSWMQR D + GE GT EP+++ + + N VRF FRVA+L LG +MI+++F EL+N+SSFT F IA+YN+LFA VL+LHESQG +MCDGVD+ MRRYFGL+YGHMGRA+FIIFIAFLNFALTDAGW+ T TGLLLL GG M+VV+ +YPHLLDEAPGLGDLKT PPR YAPPP MPST+L
Sbjct: 2 ASGPSWMQR-DQLQGEGLTATDGGIGADGTNEPNASYGAIKAEMTDTNAVRFGFRVASLALGLMMIIAAFTELWNLSSFTTFFIALYNLLFAGVLILHESQGLIMCDGVDYTMRRYFGLVYGHMGRALFIIFIAFLNFALTDAGWFATFTGLLLLLHGGAMIVVFTKYPHLLDEAPGLGDLKTTAPPRQDEYAPPPTMPSTSL 203
BLAST of mRNA_H-paniculata_contig8457.16451.1 vs. uniprot
Match: A0A7S2SJU5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJU5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.450e-12 Identity = 59/172 (34.30%), Postives = 90/172 (52.33%), Query Frame = 2
Query: 74 MAAAAPSWMQRQDGMSGERA-AMNPMNPGTGEPSSNSSEPEINQVRFAFRVAALVLGALMIVSSFVELFNM----SSFTRFCIAIYNILFAAVLMLHESQGFVMCDGVDWNMRRYFGLLYGHMGRAIFIIFIAFLNFALTDAGWWGTCTGLLLLGLGGLMLVVYMQYPHLLD 574
MAA P+WM + A A P N G+ E SSN+ VR A R+ + + +M + + L N+ S T ++ Y +LFA+VL LHE + V+ +R+ FG L+ +G+ F++FIAFLNF LTD+G G TG+ L +G + +Y++ P D
Sbjct: 5 MAAEQPAWMNTPPAAPPQSAYAPPPSNYGSMESSSNARL----YVRAAIRLVVVGMCVMMSAAGALSLANLDNSNSVVTDVIVSCYVMLFASVLFLHEVNEMRRIELVESILRKNFGFLFKPLGKGCFMVFIAFLNFGLTDSGELGLATGICLCIVGFGYVGLYLRNPEYFD 172
BLAST of mRNA_H-paniculata_contig8457.16451.1 vs. uniprot
Match: A0A7S3NGQ3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGQ3_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.930e-12 Identity = 55/174 (31.61%), Postives = 91/174 (52.30%), Query Frame = 2
Query: 95 WMQRQDGMSGERAAMNPMNPGTG--EPSSNS--SEPEINQVRFAFRVAALVLGALMIVSSFVEL-----FNMSSFTRFCIAIYNILFAAVLMLHESQGFVMCDGVDWNMRRYFGLLYGHMGRAIFIIFIAFLNFALTDAGWWGTCTGLLLLGLGGLMLVVYMQYPHLLDEAPGL 589
W+ G + A++PM TG +P +N S+P V + FR+ L +M + + L N + + F I+ Y ILFA V E+ + D ++++R FG L+ +G+AIFIIF+AFLNF + + G TG+L L G L+++++++YPH P +
Sbjct: 10 WLHDDYRGDGTQEAVSPMTGDTGLRQPQTNEFGSKP---MVIWGFRIVHFGLATMMAATGILSLTEFGRVNRNQLSAFVISFYLILFAVVWFAFETMFIMPIDYFIFHLKRNFGFLFHPLGKAIFIIFVAFLNFGVQEESL-GLATGILCLIDGALLVLLFLKYPHYHPLTPSI 179
BLAST of mRNA_H-paniculata_contig8457.16451.1 vs. uniprot
Match: A0A4D9DAG1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAG1_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.010e-9 Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 2
Query: 299 FCIAIYNILFAAVLMLHESQGFVMCDGVDWNMRRYFGLLYGHMGRAIFIIFIAFLNFALTDAGWWGTCTGLLLLGLGGLMLVVYMQYPHLLD 574
F +A+Y + AA+L E F +D RR FG +YG G+A++IIFIAFLNF L G TG++L GGLML +YP L
Sbjct: 85 FFVALYMFISAAILFFFELCQFKYVAFIDNVFRRNFGFMYGSRGKALYIIFIAFLNFGLVSTGILQFATGIVLAVDGGLMLFATFKYPTLFS 176
BLAST of mRNA_H-paniculata_contig8457.16451.1 vs. uniprot
Match: A0A2D4BSM8_PYTIN (Uncharacterized protein n=3 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSM8_PYTIN) HSP 1 Score: 55.5 bits (132), Expect = 4.310e-5 Identity = 51/162 (31.48%), Postives = 79/162 (48.77%), Query Frame = 2
Query: 203 VRFAFRVAALVLGALMIVSSFVELFNMSSFTRFCIAIYNILFAAVLMLHESQGFVMCDGVDWNMRRYFGLLYGHMGRAIFIIFIAFLNFALTDAGWWGTCTG--LLLLGLGGLMLVVYMQYPHLLDEAPGLG---------DLKTVPPRPQGYAPPPAMPST 655
+RFA V AL+LG ++ F +F +SS++ F + IY I A L+ E+ + ++ FG ++ MG+A +I+ IAFL+F+ GW G+C G LLL L L+ Y H +A G D++ +P AP A P+T
Sbjct: 64 MRFANLVGALLLG----ITCFFRMFTVSSYSHFLVVIYLIFLALGLVFIENHE--QFPSIAEKVKLNFGFMFTAMGKAAYILSIAFLSFS---QGWIGSCLGAFFLLLALFNFFLI----YRHPAYQAHMTGNTQNSQQQADVEAMPEVRYNQAPVQAAPAT 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8457.16451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8457.16451.1 >prot_H-paniculata_contig8457.16451.1 ID=prot_H-paniculata_contig8457.16451.1|Name=mRNA_H-paniculata_contig8457.16451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp MAAAAPSWMQRQDGMSGERAAMNPMNPGTGEPSSNSSEPEINQVRFAFRVback to top mRNA from alignment at H-paniculata_contig8457:2131..9144- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8457.16451.1 ID=mRNA_H-paniculata_contig8457.16451.1|Name=mRNA_H-paniculata_contig8457.16451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7014bp|location=Sequence derived from alignment at H-paniculata_contig8457:2131..9144- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8457:2131..9144- >mRNA_H-paniculata_contig8457.16451.1 ID=mRNA_H-paniculata_contig8457.16451.1|Name=mRNA_H-paniculata_contig8457.16451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig8457:2131..9144- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |