mRNA_H-paniculata_contig8445.16442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8445.16442.1
Unique NamemRNA_H-paniculata_contig8445.16442.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8445.16442.1 vs. uniprot
Match: A0A6H5L132_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L132_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.630e-14
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:  311 QVEDLVERDIDGVWFPAKVVAVREA---GVGKSEAGTRAATSRLSYDLMYLDDNNRECEVSREDIKLV 505
            +V ++VERDIDGVWFPAKVVAV E     V    +G+     +L+YDL YLDDNNRE EV  EDI++V
Sbjct:   26 RVGEVVERDIDGVWFPAKVVAVHEKKDEAVPSGGSGSIGRRRQLAYDLFYLDDNNRESEVPEEDIRVV 93
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BLAST of mRNA_H-paniculata_contig8445.16442.1 vs. uniprot
Match: D8LHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 5.180e-10
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:  311 QVEDLVERDIDGVWFPAKVVAVREAGVGKSEAGTRAATSR---LSYDLMYLDDNNRECEVSRED 493
            +V ++VERDIDGVWFPA+VV V E       +G+  +  R   L+YDL+YLDDNNRE E   +D
Sbjct:   21 RVGEVVERDIDGVWFPAQVVGVHEKTYEAGRSGSSGSIGRPWQLAYDLVYLDDNNRESEGEGKD 84
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BLAST of mRNA_H-paniculata_contig8445.16442.1 vs. uniprot
Match: A0A835Z3A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3A3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.500e-7
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 2 
Query:  314 VEDLVERDIDGVWFPAKVVAVREAGVGKSEAGTRAATSRLSYDLMYLDDNNRECEVSREDIKLVQRA 514
            V  +VERDID +W+PA+V+AVRE   G        A     YD+ YLDD N E +V+  D++L+  A
Sbjct:   39 VGSVVERDIDAIWYPAEVLAVREDACG--------AAGAYVYDIAYLDDGNTEHDVAARDLRLLDGA 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8445.16442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L132_9PHAE9.630e-1457.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB0_ECTSI5.180e-1051.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3A3_9STRA4.500e-743.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8445contigH-paniculata_contig8445:998..2134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog2880.D8LHB0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phosphatidic acid phosphatase. Source PGD
EggNOG OGs2CZYN@1,2SC5I@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_001230.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size600
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8445.16442.1prot_H-paniculata_contig8445.16442.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8445 998..2004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.8064888-CDS-H-paniculata_contig8445:997..12311622931060.8064888-CDS-H-paniculata_contig8445:997..1231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8445 998..1231 -
1691481571.951943-CDS-H-paniculata_contig8445:997..12311691481571.951943-CDS-H-paniculata_contig8445:997..1231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8445 998..1231 -
1622931060.8218367-CDS-H-paniculata_contig8445:1770..20041622931060.8218367-CDS-H-paniculata_contig8445:1770..2004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8445 1771..2004 -
1691481571.9630551-CDS-H-paniculata_contig8445:1770..20041691481571.9630551-CDS-H-paniculata_contig8445:1770..2004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8445 1771..2004 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.8378363-UTR-H-paniculata_contig8445:2004..21341622931060.8378363-UTR-H-paniculata_contig8445:2004..2134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8445 2005..2134 -
1691481571.9715524-UTR-H-paniculata_contig8445:2004..21341691481571.9715524-UTR-H-paniculata_contig8445:2004..2134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8445 2005..2134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8445.16442.1

>prot_H-paniculata_contig8445.16442.1 ID=prot_H-paniculata_contig8445.16442.1|Name=mRNA_H-paniculata_contig8445.16442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MCLTHRGCRSRKPLGDLPAIIVVSASHSRTDSTHGRCRGTDNSVNPHEMR
GENDSGGSRVQVEDLVERDIDGVWFPAKVVAVREAGVGKSEAGTRAATSR
LSYDLMYLDDNNRECEVSREDIKLVQRAYNLDGNLEKDERGAGVGGDGGN
EQLVGV
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mRNA from alignment at H-paniculata_contig8445:998..2134-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8445.16442.1 ID=mRNA_H-paniculata_contig8445.16442.1|Name=mRNA_H-paniculata_contig8445.16442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1137bp|location=Sequence derived from alignment at H-paniculata_contig8445:998..2134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGAACAACACAACCGTCAAGGGTTCTGCGGAATTTTCAATGCACAG
GAATGTTCGATATCCGCATCGACTGAGGAAGAATCAGCACCGTGCCTGCC
CATCCTAGAACAACAGGACAAGAATGCTATATGTGCTTGACCCATAGAGG
CTGTAGATCTCGCAAACCACTGGGAGACCTTCCGGCTATAATTGTCGTTT
CTGCATCGCACTCGAGAACCGACAGCACACACGGTCGGTGTCGTGGGACT
GACAACAGTGTCAACCCGCATGAAATGCGAGGTGAAAATGATTCTGGAGG
GAGTCGAGTCCAAGTGGAGGATCTGGTGGAAAGGGACATCGATGGTGTTT
GGTTTCCAGCCAAGGTGTATATGGTATATACATTCAGGTCTTTCGAGAAG
GCAAAATATTGGAGTGCTGTTGTAGTACACACGAAGGATGGTCCTACGAC
GGTGTTGGGTCGTTATGCTGCTCCGTAACACTGGTGAACGGGACGAACTC
TCCATCACTTGGTGTTGGTCGAATTTCCAGAAAAGTCTATCCCTAAGTCA
CCATTTTTTGTACAAGTTTAGAAAAGGCGAACTTACTTCGCTTATCGTAC
TCATCTACTTACAGCAACACTCACTCGTAAAAGGCAGCCCGATATTCATG
ATGCCGAGCGATAAACGACATGTTGCCAATGGTCAATATGATATTCCCAC
TGCATAGCTCGAGATTTGACAGAGGGATACATTATCTTGTATTCCACCCC
CGCTTTCAAACCGCTGGCGAGTTGTCTGCATACAGGCGCTCATTCTGCTA
GCATTCATCACCCCCCTCTCCGCCCAGTCGCGTCATCTTCTCCCGGCCCA
TTCTCACGTCTTCCGCCCGTACGCAACGCCCACACCTCTCCCAAAAAGGA
CAGGTGGTGGCGGTACGGGAAGCTGGCGTCGGAAAATCAGAAGCAGGGAC
ACGTGCAGCAACTTCCCGGCTGTCATACGATCTCATGTACCTTGACGACA
ACAACCGTGAATGCGAGGTATCTCGAGAGGATATTAAGCTGGTGCAGCGT
GCCTATAACCTTGACGGCAATCTGGAGAAAGATGAACGCGGAGCAGGTGT
TGGTGGAGACGGCGGGAACGAACAGCTGGTGGGAGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig8445:998..2134-

>mRNA_H-paniculata_contig8445.16442.1 ID=mRNA_H-paniculata_contig8445.16442.1|Name=mRNA_H-paniculata_contig8445.16442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig8445:998..2134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTTGACCCATAGAGGCTGTAGATCTCGCAAACCACTGGGAGACCT
TCCGGCTATAATTGTCGTTTCTGCATCGCACTCGAGAACCGACAGCACAC
ACGGTCGGTGTCGTGGGACTGACAACAGTGTCAACCCGCATGAAATGCGA
GGTGAAAATGATTCTGGAGGGAGTCGAGTCCAAGTGGAGGATCTGGTGGA
AAGGGACATCGATGGTGTTTGGTTTCCAGCCAAGATGTGCTTGACCCATA
GAGGCTGTAGATCTCGCAAACCACTGGGAGACCTTCCGGCTATAATTGTC
GTTTCTGCATCGCACTCGAGAACCGACAGCACACACGGTCGGTGTCGTGG
GACTGACAACAGTGTCAACCCGCATGAAATGCGAGGTGAAAATGATTCTG
GAGGGAGTCGAGTCCAAGTGGAGGATCTGGTGGAAAGGGACATCGATGGT
GTTTGGTTTCCAGCCAAGGTGGTGGCGGTACGGGAAGCTGGCGTCGGAAA
ATCAGAAGCAGGGACACGTGCAGCAACTTCCCGGCTGTCATACGATCTCA
TGTACCTTGACGACAACAACCGTGAATGCGAGGTATCTCGAGAGGATATT
AAGCTGGTGCAGCGTGCCTATAACCTTGACGGCAATCTGGAGAAAGATGA
ACGCGGAGCAGGTGTTGGTGGAGACGGCGGGAACGAACAGCTGGTGGGAG
TTGTGGTGGCGGTACGGGAAGCTGGCGTCGGAAAATCAGAAGCAGGGACA
CGTGCAGCAACTTCCCGGCTGTCATACGATCTCATGTACCTTGACGACAA
CAACCGTGAATGCGAGGTATCTCGAGAGGATATTAAGCTGGTGCAGCGTG
CCTATAACCTTGACGGCAATCTGGAGAAAGATGAACGCGGAGCAGGTGTT
GGTGGAGACGGCGGGAACGAACAGCTGGTGGGAGTT
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