mRNA_H-paniculata_contig8442.16440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8442.16440.1
Unique NamemRNA_H-paniculata_contig8442.16440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8442.16440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8442contigH-paniculata_contig8442:8554..8999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.5897684-CDS-H-paniculata_contig8442:8553..88891622931060.5897684-CDS-H-paniculata_contig8442:8553..8889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8442 8554..8889 +
1691481571.8723114-CDS-H-paniculata_contig8442:8553..88891691481571.8723114-CDS-H-paniculata_contig8442:8553..8889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8442 8554..8889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.6262276-UTR-H-paniculata_contig8442:8889..89991622931060.6262276-UTR-H-paniculata_contig8442:8889..8999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8442 8890..8999 +
1691481571.8842654-UTR-H-paniculata_contig8442:8889..89991691481571.8842654-UTR-H-paniculata_contig8442:8889..8999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8442 8890..8999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8442.16440.1prot_H-paniculata_contig8442.16440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8442 8554..8889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8442.16440.1

>prot_H-paniculata_contig8442.16440.1 ID=prot_H-paniculata_contig8442.16440.1|Name=mRNA_H-paniculata_contig8442.16440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
LPINTTLRYDVEKKNNVFLHLGFEVTPIDRPPVQYTKNRNVITPAVKRNT
FALVFTSVAAFSDVTCSNFGRHAQIQPTPSILTAACWIICYSFCIAVASS
PAFRAACIVCR*
back to top

mRNA from alignment at H-paniculata_contig8442:8554..8999+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8442.16440.1 ID=mRNA_H-paniculata_contig8442.16440.1|Name=mRNA_H-paniculata_contig8442.16440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=446bp|location=Sequence derived from alignment at H-paniculata_contig8442:8554..8999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCCATCAACACTACCTTGAGATATGATGTAGAGAAGAAAAACAACGT
GTTTCTCCACCTTGGATTCGAGGTGACCCCTATTGATCGACCCCCAGTTC
AATACACCAAAAACCGTAACGTGATCACACCCGCTGTCAAGAGGAACACG
TTTGCGCTGGTTTTCACCTCCGTAGCTGCATTTTCTGACGTGACGTGCTC
TAATTTTGGGCGACATGCCCAGATTCAACCAACCCCCTCTATCTTGACAG
CAGCTTGTTGGATAATTTGCTACTCTTTTTGCATTGCAGTTGCATCATCT
CCAGCTTTCCGGGCTGCATGTATAGTTTGTAGATGATAAGATAGTTTGCT
GGGCCGTTACTCGGCGAAAAATGTTTTGGGGGAAAAACAGCACGTTTAAA
GATTGAAAAAAGGTCTCCATTGCGTACTAAATATCATGTCACTCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8442:8554..8999+

>mRNA_H-paniculata_contig8442.16440.1 ID=mRNA_H-paniculata_contig8442.16440.1|Name=mRNA_H-paniculata_contig8442.16440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig8442:8554..8999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCCATCAACACTACCTTGAGATATGATGTAGAGAAGAAAAACAACGT
GTTTCTCCACCTTGGATTCGAGGTGACCCCTATTGATCGACCCCCAGTTC
AATACACCAAAAACCGTAACGTGATCACACCCGCTGTCAAGAGGAACACG
TTTGCGCTGGTTTTCACCTCCGTAGCTGCATTTTCTGACGTGACGTGCTC
TAATTTTGGGCGACATGCCCAGATTCAACCAACCCCCTCTATCTTGACAG
CAGCTTGTTGGATAATTTGCTACTCTTTTTGCATTGCAGTTGCATCATCT
CCAGCTTTCCGGGCTGCATGTATAGTTTGTAGATGACTACCCATCAACAC
TACCTTGAGATATGATGTAGAGAAGAAAAACAACGTGTTTCTCCACCTTG
GATTCGAGGTGACCCCTATTGATCGACCCCCAGTTCAATACACCAAAAAC
CGTAACGTGATCACACCCGCTGTCAAGAGGAACACGTTTGCGCTGGTTTT
CACCTCCGTAGCTGCATTTTCTGACGTGACGTGCTCTAATTTTGGGCGAC
ATGCCCAGATTCAACCAACCCCCTCTATCTTGACAGCAGCTTGTTGGATA
ATTTGCTACTCTTTTTGCATTGCAGTTGCATCATCTCCAGCTTTCCGGGC
TGCATGTATAGTTTGTAGATGA
back to top