mRNA_H-paniculata_contig8440.16438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8440.16438.1
Unique NamemRNA_H-paniculata_contig8440.16438.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8440.16438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8440contigH-paniculata_contig8440:202..3704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1056
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8440.16438.1prot_H-paniculata_contig8440.16438.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8440 437..3636 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.417635-UTR-H-paniculata_contig8440:201..4361622931060.417635-UTR-H-paniculata_contig8440:201..436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8440 202..436 -
1691481571.799465-UTR-H-paniculata_contig8440:201..4361691481571.799465-UTR-H-paniculata_contig8440:201..436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8440 202..436 -
1622931060.5112915-UTR-H-paniculata_contig8440:3636..37041622931060.5112915-UTR-H-paniculata_contig8440:3636..3704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8440 3637..3704 -
1691481571.8605871-UTR-H-paniculata_contig8440:3636..37041691481571.8605871-UTR-H-paniculata_contig8440:3636..3704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8440 3637..3704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.4314516-CDS-H-paniculata_contig8440:436..5801622931060.4314516-CDS-H-paniculata_contig8440:436..580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 437..580 -
1691481571.8155782-CDS-H-paniculata_contig8440:436..5801691481571.8155782-CDS-H-paniculata_contig8440:436..580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 437..580 -
1622931060.4494867-CDS-H-paniculata_contig8440:1536..19921622931060.4494867-CDS-H-paniculata_contig8440:1536..1992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 1537..1992 -
1691481571.8252068-CDS-H-paniculata_contig8440:1536..19921691481571.8252068-CDS-H-paniculata_contig8440:1536..1992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 1537..1992 -
1622931060.4759805-CDS-H-paniculata_contig8440:2296..24231622931060.4759805-CDS-H-paniculata_contig8440:2296..2423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 2297..2423 -
1691481571.8335621-CDS-H-paniculata_contig8440:2296..24231691481571.8335621-CDS-H-paniculata_contig8440:2296..2423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 2297..2423 -
1622931060.4913015-CDS-H-paniculata_contig8440:3610..36361622931060.4913015-CDS-H-paniculata_contig8440:3610..3636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 3611..3636 -
1691481571.8460805-CDS-H-paniculata_contig8440:3610..36361691481571.8460805-CDS-H-paniculata_contig8440:3610..3636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8440 3611..3636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8440.16438.1

>prot_H-paniculata_contig8440.16438.1 ID=prot_H-paniculata_contig8440.16438.1|Name=mRNA_H-paniculata_contig8440.16438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp
MTTTPRPMSSSSSSSGDGKGDGSGGSSSSGRRAKRRPLQDDEGLEHDTIR
QDNTEPFPSPASALCGNTNNNNDTAGRRVRLPRTPAPRRTDTIAHIDANG
FKIDYGFTPPCLEDSPLYNPGTPTLEQHSPVVLPTSPRYTPSDSPGYPVM
SNSWDARRSPSTGEDPSCPHLNWLVESKEFASCGMMGTEGPGACESKRYR
FGQERTETTGRPFKATYRSALVCKVNLCGLRRPAASMSVQSPNKCCWIHR
*
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mRNA from alignment at H-paniculata_contig8440:202..3704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8440.16438.1 ID=mRNA_H-paniculata_contig8440.16438.1|Name=mRNA_H-paniculata_contig8440.16438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3503bp|location=Sequence derived from alignment at H-paniculata_contig8440:202..3704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTCGAGTAGCAGCAAGCGGCAGCACGAATTCGACGCGAAAGACAGCG
TCGGAGAAGAGGACAGCAATGACAACGACGCCACGACCGATGAGGTAAGG
ACATTGATAAGAGGAGACTCGATCATTCCCTTTCCAACCCCACCCCCTCC
TTACAAAGGTTCAGGAGCGTTTTGGGAGCAACCATCGGGAACAAACGTTA
CAGTTTGTTGGCCTTTCTTTTGCGGACGTTTTCTGCCCGCCCAACGAATC
ATCAATCACCAACTACTTTCTAACGTCCTATGCTACATATGTTCCGTAAG
CCTGGCATACAACGGTAATTTGTAAATCTTGTGCAATTTGGGGTTTCGTG
GAAATAGAGCATGTCGTTTGAAAGACTATATGTTCATATTGCATGTAGAT
ATCTTCATAATGTTTTTGAGTGTGCAGGGAGCGCTGCCGTACGTTAGGCA
CCCTTGCAGAGGGGGTTAAGAGCATGTACCGCCAATATGACGCGGATATT
CTAGAGTTGGTTTGGCAGAGCCTATTCAAGCGGTATTGAAAGCGCTCGGG
GAAACGATTTAGACATTGGGCGTACCCGGAGATGGAAAAGGCAGCATGAA
GAGCTTCTGGACCGCTTGGTCCCCATTGACAGAGCCGCTTAAGACGCGGC
CTTCAATTGGTGGATTGATGGGAAGGATGGCAGTAATGAGTAATGAATTT
TATGTACTATGTAGTATGAAACGCCGAGGGATACAACGCAACAAACCATA
TATTAATTGGAGGTCCCCATCACTGGGCGGTGATGGTGACCTTCAGCTGC
TGCCGCAAGGTTGTCCCATGCTACCGCCGTTATCATAGATGGGCGATAGC
TACAAAGACGACAATCCATGATTCATCCTACGTAAACTTTGAAGCACGCT
TCTCGAAACCGGCCGATCACAAACAGCATGCGTGTATTGTATTTAATGTG
CAGAACAACGAGCTTAAGCCTGAGGCCACGCGTAACAGCAACAAAGAGTA
GTTATAATGTACGTGGACACCTCGTCGCGGTGAAACATGTGTGATATTTG
AATGTATATCTCCCATTGCTCTTCGATGCATGTATTTCTGACTGATATTT
TTCTCCGGGTTCGACTATAGCGTGTACACACATTTTCTCCCTTGAAAATT
CTCCTACGATAAGAGGTGATCTTGGTGTTCAGTGCCATGTAGACTACGTT
TTTGAATGGGTTTTGGTGTTGTCTATTCCACTACCTGAAAACATTTTTTT
ATTCCCCCGACCCCGCTTGTCTACCTAGCAGCAGCAGCAGCAGCAGCAGC
GGTGACGGCAAAGGCGATGGCAGTGGCGGTAGCAGCAGCAGCGGAAGGAG
GGCTAAGCGGCGACCGCTTCAGGATGATGAAGGTCTTGAGCACGACACCA
TCAGACAGGTAGGAATATCGACAACGGGACACTTGAGACCTCTTTGTTTT
CCCCCCTCTAGAATCGTTCGGCTACGTTCTGAGCGCAACGGCCGGTGGCA
TAAGTTCCAATTTGGTTGCCTTGTTTCTAGTGGTTGTCTGCCCGCTCTGT
CGACGAACCACTATCCGAACAGTGTACCATGTAGGTATCCACTAGGTCAT
CCACCAGGCTGTTCCTCCCTCTCTCGAAAAACCTACTAGACAGACTGTTT
CTTGGCGTTTCCGCCCCCGTATGTTATGCTGTTGTTTGGTCTCATTTCTG
TCCATCGCCCAGGATAATACGGAGCCGTTTCCAAGCCCCGCCTCCGCCCT
CTGTGGCAATACGAACAATAATAACGATACTGCCGGCCGCAGGGTGCGAC
TGCCGCGCACGCCGGCTCCTAGGAGGACAGACACCATTGCCCATATCGAT
GCCAACGGGTTTAAGATCGACTATGGGTTTACGCCCCCTTGCTTGGAGGA
CTCTCCGCTTTACAATCCTGGTACTCCGACATTGGAGCAGCACTCGCCGG
TGGTTCTCCCTACATCTCCGCGCTATACGCCATCAGATTCGCCGGGATAT
CCAGTCATGAGCAACAGCTGGGATGCTCGGCGCTCGCCGTCTACGGGAGA
GGATCCGAGCTGTCCTCACCTGAATTGGCTGGTGGAATCGAAGGAGTTCG
CGTCGTGCGGCATGATGGGCACTGAAGGTCCCGGCGCCTGTGAGTCGAAG
CGCTACCGTTTCGGGCAGGTGGGTGTTGCTTGTTCGGCTGACCTTCTGTG
TTGATTTTGTTGGTGGTACGCGTGGTTGGTAAAGGTGGTAACAGGAGTAA
GGAAGTTCAGTCGCGAGGAGATGTAATATAGGGGAATGTTGTACTGATGC
TGAAGAACGAGCAGCATGGTAGATACAAGTAGATGATGTAAGATTCTTGA
AGGTGATACTTCGAACATGGTTCAAACTTCGTTTCATCCCGCGAGAGAGT
CAAGCACACTCGTGGGAATATTTGAGCTCGGGTTCGCAGTATGTCCAAAG
TTGTCTTCTTTGCTCACACCGCACTTGAAAATATGTCGCGGAGGAGCTCA
TGTCAGTCCAGCTCAAAGTTTGTTAAACAAAATAATGTCGAAGAAAATTT
GTGCTTTTCTAGAGAAAAATTCAACGGTAGGATACGATTTTTAAAGGGCA
AATTGACTGAATACCTTGATTGTGTAGTTGGTTCTCCAGAAAATATTTCT
ATGACAGAAATTCACGAATTCACGGAATTCACGTATTTCCCATGCATGGA
GAACATGTGTACTGTAGTGCAGTGTTGGACCAATACACGTAAAAAATTCC
ACCAGTAGCGTGTAGTGTATCGACTGGATCCGCCTGAAGCAGTCCCTGTA
AAATCGGGAGAATGACCACTATTTCGGAGCAGTTAAGGAAATGGTTATTT
GCCCTGAGATGACAGATTATGAGACCGGATTCGGGTTCGTCTTGATGGTG
CGATTCGTTCGAAGTTTTTTTCCATATTGGAACTCTCAACGACAAGCAGG
AAACAGTGGCTAGGTATGCAGTGGTGGAAACATTCTTGTGCATGGTCCGT
GGGCACAACCTGAAGGTAGCATAGCTAGTACCTACAGTTGGCGTGCAAAG
CACGCGTGAATTTTCTTTCCCCTCTCACGTCATCTAACGCCAACTGTGTA
TTGATACTTGTTCGGCAATGCAAGGAGAGGACCGAGACGACGGGACGGCC
GTTCAAGGCCACTTATCGAAGCGCACTCGTCTGTAAAGTGAATTTATGTG
GACTTCGGAGACCTGCAGCATCGATGAGTGTCCAAAGTCCAAATAAATGC
TGTTGGATTCATAGGTGACAACACTGGACGCGAGAGGCGAACCGGGGAAG
TGGGAGAGGTCAAAGCTGGGCAAAAATTATTGTAGTCTTTGGTGGCAGTC
GTTTCATTCGAAGCCTGTTCAGCCCTGTGCGTTGGAGTCTTTATTTGTGT
TGTTGGGCGTAGCATGAAGCGAGTCGCACGGTCCCAAAATATATCGAAAT
ACATGCGTTGAAAACAAGGAGGTGGCCATTTATTTTTATTTTTTCAAACC
CCC
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Coding sequence (CDS) from alignment at H-paniculata_contig8440:202..3704-

>mRNA_H-paniculata_contig8440.16438.1 ID=mRNA_H-paniculata_contig8440.16438.1|Name=mRNA_H-paniculata_contig8440.16438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig8440:202..3704- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACGACGCCACGACCGATGAGATGACAACGACGCCACGACCGATG
AGCAGCAGCAGCAGCAGCAGCGGTGACGGCAAAGGCGATGGCAGTGGCGG
TAGCAGCAGCAGCGGAAGGAGGGCTAAGCGGCGACCGCTTCAGGATGATG
AAGGTCTTGAGCACGACACCATCAGACAGCAGCAGCAGCAGCAGCAGCGG
TGACGGCAAAGGCGATGGCAGTGGCGGTAGCAGCAGCAGCGGAAGGAGGG
CTAAGCGGCGACCGCTTCAGGATGATGAAGGTCTTGAGCACGACACCATC
AGACAGGATAATACGGAGCCGTTTCCAAGCCCCGCCTCCGCCCTCTGTGG
CAATACGAACAATAATAACGATACTGCCGGCCGCAGGGTGCGACTGCCGC
GCACGCCGGCTCCTAGGAGGACAGACACCATTGCCCATATCGATGCCAAC
GGGTTTAAGATCGACTATGGGTTTACGCCCCCTTGCTTGGAGGACTCTCC
GCTTTACAATCCTGGTACTCCGACATTGGAGCAGCACTCGCCGGTGGTTC
TCCCTACATCTCCGCGCTATACGCCATCAGATTCGCCGGGATATCCAGTC
ATGAGCAACAGCTGGGATGCTCGGCGCTCGCCGTCTACGGGAGAGGATCC
GAGCTGTCCTCACCTGAATTGGCTGGTGGAATCGAAGGAGTTCGCGTCGT
GCGGCATGATGGGCACTGAAGGTCCCGGCGCCTGTGAGTCGAAGCGCTAC
CGTTTCGGGCAGGATAATACGGAGCCGTTTCCAAGCCCCGCCTCCGCCCT
CTGTGGCAATACGAACAATAATAACGATACTGCCGGCCGCAGGGTGCGAC
TGCCGCGCACGCCGGCTCCTAGGAGGACAGACACCATTGCCCATATCGAT
GCCAACGGGTTTAAGATCGACTATGGGTTTACGCCCCCTTGCTTGGAGGA
CTCTCCGCTTTACAATCCTGGTACTCCGACATTGGAGCAGCACTCGCCGG
TGGTTCTCCCTACATCTCCGCGCTATACGCCATCAGATTCGCCGGGATAT
CCAGTCATGAGCAACAGCTGGGATGCTCGGCGCTCGCCGTCTACGGGAGA
GGATCCGAGCTGTCCTCACCTGAATTGGCTGGTGGAATCGAAGGAGTTCG
CGTCGTGCGGCATGATGGGCACTGAAGGTCCCGGCGCCTGTGAGTCGAAG
CGCTACCGTTTCGGGCAGGAGAGGACCGAGACGACGGGACGGCCGTTCAA
GGCCACTTATCGAAGCGCACTCGTCTGTAAAGTGAATTTATGTGGACTTC
GGAGACCTGCAGCATCGATGAGTGTCCAAAGTCCAAATAAATGCTGTTGG
ATTCATAGGTGAGAGAGGACCGAGACGACGGGACGGCCGTTCAAGGCCAC
TTATCGAAGCGCACTCGTCTGTAAAGTGAATTTATGTGGACTTCGGAGAC
CTGCAGCATCGATGAGTGTCCAAAGTCCAAATAAATGCTGTTGGATTCAT
AGGTGA
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