mRNA_H-paniculata_contig843.16431.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig843.16431.1 vs. uniprot
Match: D8LSS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS4_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 2.830e-15 Identity = 134/396 (33.84%), Postives = 164/396 (41.41%), Query Frame = 1
Query: 238 AAVPPSALDILPDSPDLCDD---LSFGDFDILTSA----GCGVAGSVAAPEVGHGVEPRLR----GQAAEENTR----------------IASSLRTRYHRSYVAVLTPQVPTAAXXXXXAATVRRTNTCRSEADDW--------------FAGASAFLLQME------GANDSANKRSLDRHRRRNAERKRHIGSVACGAGGGSDGNA---------------AGEEMKETWEVGVPEVCLWRGCLSDASCGSSLCLVHFQLKEFLDVKAAKARTSSEARRFLPPGCLGSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAFRSPATHAVNYGASFGLHDIAAAAGEGEVVFAHSMSPLLSELFNGKLASTIRLFCQRAVAESSGQQRRG 1239
AA PPSA+D+LPD P + G +A G GV G+ P G P +AA R I+SSLR + +YVAVL P + AA +GASA +LQ+E G++ S+ DR + G+ A AG G+ A AG EM VC WR CL+DA G LC VH +LK FLD KAAK S+A RFLPPG + XXXXXXXXXXXXXX TA A AV+ G GEGE+ SMSPLL+EL NGKL +TI +FC+RA AE+ RRG
Sbjct: 897 AATPPSAVDVLPDEPPTSSSAPPVGIGRTGTRPAAPSCPGDGVEGADGGPTSSGGEVPADNVEDDAEAAWSARRRRTPLCSTADSGADAPISSSLRAPFRHTYVAVLAPPLAQPPSPFSSAAGXXXXXXXXXXXXXXXXXXXXXXXXGQTPLSGASALILQLETPVTATGSSLSSFGAVQDRGQ---------CGAAAAVAGCGNGDGAVVVGXXXXXXXXXXXAGSEMPR-------RVCGWRACLADAVAGP-LCPVHLELKRFLDGKAAKTGGVSDAFRFLPPGSGPKRRSSXXXXXXXXXXXXXXAATEAG----------TARVVAALSAVDGG------------GEGELSVMRSMSPLLAELLNGKLGTTIAMFCRRAAAEARAPGRRG 1253
BLAST of mRNA_H-paniculata_contig843.16431.1 vs. uniprot
Match: D8LSS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS3_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 6.630e-6 Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 1432 VLKVEKEVTAELRRLSGLRVYPEAELARIRQEHEALTGEWRQAVRRPCDDN 1584
VL+ EKEVT ELRRLS L VYP AELA IR+EH AL EW+Q + + D+
Sbjct: 13 VLRAEKEVTLELRRLSNLEVYPAAELAHIRREHRALATEWQQVIGKDATDD 63 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig843.16431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig843.16431.1 >prot_H-paniculata_contig843.16431.1 ID=prot_H-paniculata_contig843.16431.1|Name=mRNA_H-paniculata_contig843.16431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=847bp MEGANDSANKRSLDRHRRRNAERKRHIGSVACGAGGGSDGNAAGEEMKETback to top mRNA from alignment at H-paniculata_contig843:21362..30973+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig843.16431.1 ID=mRNA_H-paniculata_contig843.16431.1|Name=mRNA_H-paniculata_contig843.16431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9612bp|location=Sequence derived from alignment at H-paniculata_contig843:21362..30973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig843:21362..30973+ >mRNA_H-paniculata_contig843.16431.1 ID=mRNA_H-paniculata_contig843.16431.1|Name=mRNA_H-paniculata_contig843.16431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5082bp|location=Sequence derived from alignment at H-paniculata_contig843:21362..30973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |