mRNA_H-paniculata_contig8371.16384.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8371.16384.1
Unique NamemRNA_H-paniculata_contig8371.16384.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8371.16384.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.610e-14
Identity = 61/146 (41.78%), Postives = 75/146 (51.37%), Query Frame = 3 
Query:  252 EARPIGLLGLLQPFPGGFLEPFMDTDTARNITAVGKDSLHHIIGGNPPHLWHKGSLHAPPXXXXXXXXPDSDEHPKESVEDCSGAVGIEGPRSVVGDDDSEASLLLDARLQGGVLLGRAPAIARILTATV-PGGGEWVLPRAGPVQ 686
            +A  +GLLG   P      E  +D DTA +ITAVG+ SL H++GG P +LW +                   E    + E  S AV    P  +         +LL ARLQG V LGR PA+AR LTA V P GGEW+LPRA PVQ
Sbjct:  754 DAEVLGLLGYCDPS-----EEDLDADTAHDITAVGEASLDHVVGG-PDNLWARPFF----------------ETKDGNGEHHSAAVAGAAPSPL---------MLLAARLQGAVALGRGPAVARSLTAVVLPRGGEWMLPRARPVQ 868
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BLAST of mRNA_H-paniculata_contig8371.16384.1 vs. uniprot
Match: D7FN13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN13_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.160e-13
Identity = 57/146 (39.04%), Postives = 73/146 (50.00%), Query Frame = 3 
Query:  252 EARPIGLLGLLQPFPGGFLEPFMDTDTARNITAVGKDSLHHIIGGNPPHLWHKGSLHAPPXXXXXXXXPDSDEHPKESVEDCSGAVGIEGPRSVVGDDDSEASLLLDARLQGGVLLGRAPAIARILTATV-PGGGEWVLPRAGPVQ 686
            +A  +GLL    P      E  +D DTA ++ AVG+ SL H++GG P +LW +               P+      +SV   +GA                  +LL ARLQG V LGR PA+AR LTA V P GGEW+LPRA PVQ
Sbjct:  608 DAEVLGLLAYCDPS-----EEDLDADTAHDVNAVGEASLGHVVGG-PDNLWARSFFE-----------PEDGNREHDSVAAAAGAA-------------PSPLMLLAARLQGAVALGRGPAVARSLTAVVLPRGGEWMLPRARPVQ 723
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8371.16384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE2.610e-1441.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN13_ECTSI1.160e-1339.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8371contigH-paniculata_contig8371:3069..6007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size687
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8371.16384.1prot_H-paniculata_contig8371.16384.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8371 3174..5854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.5631518-UTR-H-paniculata_contig8371:3068..31731622931052.5631518-UTR-H-paniculata_contig8371:3068..3173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8371 3069..3173 +
1691481568.1353645-UTR-H-paniculata_contig8371:3068..31731691481568.1353645-UTR-H-paniculata_contig8371:3068..3173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8371 3069..3173 +
1622931052.6294608-UTR-H-paniculata_contig8371:5854..60071622931052.6294608-UTR-H-paniculata_contig8371:5854..6007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8371 5855..6007 +
1691481568.1802127-UTR-H-paniculata_contig8371:5854..60071691481568.1802127-UTR-H-paniculata_contig8371:5854..6007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8371 5855..6007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.578238-CDS-H-paniculata_contig8371:3173..32031622931052.578238-CDS-H-paniculata_contig8371:3173..3203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 3174..3203 +
1691481568.1455228-CDS-H-paniculata_contig8371:3173..32031691481568.1455228-CDS-H-paniculata_contig8371:3173..3203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 3174..3203 +
1622931052.5951674-CDS-H-paniculata_contig8371:4842..50151622931052.5951674-CDS-H-paniculata_contig8371:4842..5015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 4843..5015 +
1691481568.1559246-CDS-H-paniculata_contig8371:4842..50151691481568.1559246-CDS-H-paniculata_contig8371:4842..5015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 4843..5015 +
1622931052.6142752-CDS-H-paniculata_contig8371:5628..58541622931052.6142752-CDS-H-paniculata_contig8371:5628..5854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 5629..5854 +
1691481568.1703146-CDS-H-paniculata_contig8371:5628..58541691481568.1703146-CDS-H-paniculata_contig8371:5628..5854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8371 5629..5854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8371.16384.1

>prot_H-paniculata_contig8371.16384.1 ID=prot_H-paniculata_contig8371.16384.1|Name=mRNA_H-paniculata_contig8371.16384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MVVPGRSLGQRVHLKMTITIAEASLSETGRARVRAWEHFHLGHAHRVGEK
LDQLGCLAFCNPSQVVFLSLSWTPIQHATSPPWARILFITSSAGTLPTSG
TKEVSMLHPPPPRIITTPTRTSILKKVWKTARALSASKAPGA*
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mRNA from alignment at H-paniculata_contig8371:3069..6007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8371.16384.1 ID=mRNA_H-paniculata_contig8371.16384.1|Name=mRNA_H-paniculata_contig8371.16384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2939bp|location=Sequence derived from alignment at H-paniculata_contig8371:3069..6007+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCCCCACGTTGTCTGGGTCAATCCGGCCGGGGTGAAGGTGTTCGCTAG
TGGCGGTTTGGGCGGGGAGGGTGACGGGGGCAGCGTTGGCGGCGGCGGCG
ACGACATGGTGGTGCCCGGGCGGAGCTTAGGACAAGTAAGACATATCGTA
ATAATAATAATGGCTGTGATAATGATTGATCTCGAAGGAGATGTATGAAG
GATACCGCAGTACTTACTCTACATGTCTGATAAACGCGCATTATTACAAG
GTTACTTGACAGTATGTACTAGCACGAGTATGTATAGTCATTAGGTAAAG
CCACGGCTACGCTATCCCGTGTAGCCTAAGCTTTGTTCTCTACGGAAATT
CTATTTTCGGAATTCATTTGAATATAGAGTTGAAAATAGGTTCTGGAATC
AAAAACAATGATCACCATCTCCATCCACCACGTTGAACAAGACGTGAATA
AAAATCCACGAATATGAGTGAGAATACCTGGAGCATTCGCAACGAAAGAT
ATTATAAAGTATTCGCCTAAGGTTCACAACAAGCCCGTTTTTTTGTTTTT
CATGTTTGTGCCCCGGACATTTTCGACTGCTTCCACCAATAATGATGGCA
AAAAATACCAACAAACACGGGGGGGCGGAGGGTCAACACTTCATCGTAGG
TGCCCACATATTCTGAAATTGGGGTGAATGCTCTTTTCCATCTTCGTTTA
ATATTTCACTCATGTCGCCATTTCACCGGTAGTATGTAAGTATAGGTGTG
CGTCAGACGTGAAGCCTTCGGTGGTCTGTGCCTGGGGGGCTGTGTCTGCA
CGTATAAGGGGAACTAGCAGTAGTTGGTGAAGGTTGAGCGCGGTGCGGCT
AGTCGTTGTGTACAGAGAAGTAAATATGCCAACTTCCTATCTCTGTGCTC
TCTATATATGTGTACCGTCTGTTACTTGACTGGCGGTCTGAGAAGTGGTG
ACTCCTTAGGACCGGTATTCTGAACGCTAGTTTTTTTTTCTTCTTCCTCC
TCTTTTTTCTTTTTTTCGCTGTTTTTTTATTTTTTCAGTATCTACAGTTT
AAAATTTCGGAAATGAAAAAGTTATATATTTCCGTGTACTAAAGCGCTTT
TTGCCGACAATATCCTTGGCGTGACTCCCCAAACTTTTGAACATTTCTGT
ACCTTTGTCCAATATCTGCGAAGTTCTGATAGTGTATATTACTGATTTAC
TCTGAGATGCGTCAGAAAAAAATTGTAAGATGTTTATTGTTTGCCCTATT
TAGCTAACTCTATGTAGATAGATAGGTTTGTGTGGAGCTGCATTTTTGAT
AGACGTGCATCACTTTTGGGCGAAATGACTTGTTCATACTCGCTAGCCAG
GATCAAGTGCTGGTCTCCAAGCCCACACTCAATGCTTACCGATGAGGATG
AAATTTGAATAACCTGTTTTTCAGTACGAGTATGTGCATCTATCTCCACT
ACAGGTTTTGATACTTGATAGGGTGGAGTTTGGCTTATTTTGTTGTTCGA
AGTGCTGCGATATCTAGACATTTTTCCAAATCGAAATGTGCGTCCAAATT
GTGGGGAAATTCGTTTTTTTTGGGGGATTTTGGCATTCTGTGCGAGGATG
GACTGAGCACCTGTTCTAAATGACGTCCCCCTTATTGGTGTCATTATCTA
ATTTTGCTCATAAGTGTATACAACTGAAGTCTGAAGTCAGTTGCATAGTC
TTTCTCAACATGGCTACACTAAATTACCCCCCCCCCAACCCGCCTTCCCT
CACCTACCCTTCACTTCACCTCAGAGGGTACACCTAAAAATGACCATCAC
TATTGCTGAGGCATCGCTGAGTGAGACGGGAAGAGCACGGGTCAGGGCGT
GGGAACACTTTCATCTCGGACATGCGCACCGAGTAGGGGAGAAGCTCGAC
CAATTGGGCTGCTTGGCCTTTTGCAACCCTTCCCAGGTGGTTTTCTTGTC
TTGTTGTTGGGGGCTGAAGTGGGGGGCGGTGGGGGGGTGGGGGGCGATAG
TTGACTGGAAAAGGGTATTCCTCGTTCGGGCTCTTCCCAGTTTTGCGTTT
TTATTTTGTGTAGGCGTCCAGCACGGAAGCTGTCGTTGGTGTTGAGCGTA
GGAATAGCAGAATTCGAGTCGTGTCAATTCCGTTGTGAACCCCCCGAGTA
AGTCGTTCACTGTACCCTGCAATGTCCAAGTATCACTAAATATACCTTTT
CTAGCCTACTGGACTTTTATGGGAAGGGAGGGAGGGGAGAGGGTCGAGCG
AGCGAAGGAGTATGTTTCTTCTCAGCCCAATTGGCATTTTTTGGGCAGCC
CTAAAATACTACAAATCGGGTTTGTTTCTACTCGTCTTATCTAGGCATAC
TTCCAATCATGCTACTTCTTTACAGAGAAACGGAATGAACGAAAATAGGT
ATCAATATTACTAGCTAGGGCATTAGCATCCCCCCCCCTCCCCCCTCCCT
CCACGCTTCCTCTCCTGTAAGATCCTTCCGTCCTCTCTTCCTCCCTCCCT
CTCTCCAAATCAACTCAACTTAACTCAAATTCTGCACATACATGCCGTTT
TACTACACAGGAGCCTTTCATGGACACCGATACAGCACGCAACATCACCG
CCGTGGGCAAGGATTCTCTTCATCACATCATCGGCGGGAACCCTCCCCAC
CTCTGGCACAAAGGAAGTCTCCATGCTCCACCCCCCACCACCAAGAATAA
TAACAACCCCGACTCGGACGAGCATCCTAAAGAAAGTGTGGAAGACTGCT
CGGGCGCTGTCGGCATCGAAGGCCCCCGGAGCGTAGTGGGCGATGATGAT
TCAGAGGCGTCGCTGTTGCTGGATGCGCGATTGCAGGGGGGGGTGCTGCT
CGGACGTGCTCCAGCGATTGCTCGGATTCTGACGGCGACCGTGCCTGGGG
GTGGGGAGTGGGTTCTCCCTCGGGCCGGACCTGTGCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8371:3069..6007+

>mRNA_H-paniculata_contig8371.16384.1 ID=mRNA_H-paniculata_contig8371.16384.1|Name=mRNA_H-paniculata_contig8371.16384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig8371:3069..6007+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGCCCGGGCGGAGCTTAGGACAAATGGTGGTGCCCGGGCGGAG
CTTAGGACAAAGGGTACACCTAAAAATGACCATCACTATTGCTGAGGCAT
CGCTGAGTGAGACGGGAAGAGCACGGGTCAGGGCGTGGGAACACTTTCAT
CTCGGACATGCGCACCGAGTAGGGGAGAAGCTCGACCAATTGGGCTGCTT
GGCCTTTTGCAACCCTTCCCAGGTGGTTTTCTTAGGGTACACCTAAAAAT
GACCATCACTATTGCTGAGGCATCGCTGAGTGAGACGGGAAGAGCACGGG
TCAGGGCGTGGGAACACTTTCATCTCGGACATGCGCACCGAGTAGGGGAG
AAGCTCGACCAATTGGGCTGCTTGGCCTTTTGCAACCCTTCCCAGGTGGT
TTTCTTGAGCCTTTCATGGACACCGATACAGCACGCAACATCACCGCCGT
GGGCAAGGATTCTCTTCATCACATCATCGGCGGGAACCCTCCCCACCTCT
GGCACAAAGGAAGTCTCCATGCTCCACCCCCCACCACCAAGAATAATAAC
AACCCCGACTCGGACGAGCATCCTAAAGAAAGTGTGGAAGACTGCTCGGG
CGCTGTCGGCATCGAAGGCCCCCGGAGCGTAGGAGCCTTTCATGGACACC
GATACAGCACGCAACATCACCGCCGTGGGCAAGGATTCTCTTCATCACAT
CATCGGCGGGAACCCTCCCCACCTCTGGCACAAAGGAAGTCTCCATGCTC
CACCCCCCACCACCAAGAATAATAACAACCCCGACTCGGACGAGCATCCT
AAAGAAAGTGTGGAAGACTGCTCGGGCGCTGTCGGCATCGAAGGCCCCCG
GAGCGTAG
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