mRNA_H-paniculata_contig8304.16328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.740e-7 Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = -2
Query: 12 TTKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLDEQGQPGAVKN 233
T +QR V+ TVV +VT +LF+IDAP GTGK + E ++ A+ RS K+VL ++S M++LPL+E+ GA+ N
Sbjct: 456 THEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLEEKNVSGAMCN 544
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2G8SNC3_9APHY (Helitron_like_N domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SNC3_9APHY) HSP 1 Score: 59.3 bits (142), Expect = 4.180e-7 Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = -3
Query: 344 KYLFKYYAKGPDHAHARIL-------------HVDDEIEQYCCTRYISAAETTWPLLGFHVLSRNPSVTLI 517
+YLFKY KGPDHA ++ H+D EI +Y RY+SAAE TW +LGFH+ + P+V+ +
Sbjct: 299 QYLFKYIHKGPDHAKFAVVADHSASDPSAAPTHID-EINEYWDGRYLSAAEATWRILGFHITKKEPAVSAL 368
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 4.340e-7 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = -2
Query: 12 TTKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLDEQGQPGAVKN 233
T +QR V+ TVV +VT +LF+IDAP GTGK + E ++ A+ RS K+VL ++S M++LPL+++ GA+ N
Sbjct: 293 THEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLEDKNVSGAMCN 381
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A5K1K3W0_9APHY (ATP-dependent DNA helicase n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K3W0_9APHY) HSP 1 Score: 57.8 bits (138), Expect = 1.540e-6 Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = -3
Query: 344 KYLFKYYAKGPDHAHARIL-----------HVDDEIEQYCCTRYISAAETTWPLLGFHVLSRNPSVTLI 517
+YLFKY KGPD A ++ HVD EI +Y RY+SAAE TW +LGFH+ ++P+V+ +
Sbjct: 479 QYLFKYIHKGPDRAKFAVVSDAPSSQSSTAHVD-EINEYWDGRYLSAAEATWRILGFHITKKDPAVSAL 546
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: UPI001D01CF2F (ATP-dependent DNA helicase RRM3-like n=3 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D01CF2F) HSP 1 Score: 55.1 bits (131), Expect = 5.020e-6 Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = -2
Query: 18 GKPTTLSTMSPFLRTTKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLDEQGQPGAV 275
G T+ T S L T +Q+ ++ ++ AV +G +F +DAP GTGK FL +I+AK RS KI L+++S ++E+PLD +P A+
Sbjct: 25 GNLATIITNSEPLLTAEQKIIYDRIMLAVAAEQGGIFFLDAPGGTGKTFLISLILAKIRSQQKIALVVASSGITATLLDGGRTAHSLFEVPLDIHHKPDAM 125
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2X0NRX7_9BASI (ATP-dependent DNA helicase n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0NRX7_9BASI) HSP 1 Score: 56.2 bits (134), Expect = 5.070e-6 Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = -2
Query: 63 TKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL 230
TKQR V TV+D++ + G + IDAP GTGK FLEK+I+A+ RS GK L ++SL
Sbjct: 799 TKQRVVVETVLDSILNSCGKVSFIDAPGGTGKTFLEKMILARIRSEGKYALAVASL 854
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A812DXG1_SEPPH (ATP-dependent DNA helicase n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DXG1_SEPPH) HSP 1 Score: 55.5 bits (132), Expect = 6.200e-6 Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = -2
Query: 42 KQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLD 227
+QRT + TV+DAV + G +F +DAP GTGK+F+ K+I+A+ R G I L ++S M+ LPLD
Sbjct: 83 EQRTAYTTVIDAVRQQRGGIFFLDAPGGTGKMFITKLILAEIRRHGNITLAVASSRIAAILLSGGQTAHSMFRLPLD 159
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2X0M924_9BASI (ATP-dependent DNA helicase n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0M924_9BASI) HSP 1 Score: 55.1 bits (131), Expect = 1.280e-5 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = -2
Query: 66 KQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISS 227
KQR V TV+D++ + G +F IDAP GTGK FLEK+I A RS GK L ++S
Sbjct: 864 KQRVVVETVLDSILNSRGKVFFIDAPGGTGKTFLEKMIFAWIRSEGKYALAVAS 917
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2X0MZG5_9BASI (ATP-dependent DNA helicase n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MZG5_9BASI) HSP 1 Score: 53.9 bits (128), Expect = 2.980e-5 Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = -2
Query: 63 TKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL 230
TKQ V TV+D + + G +F IDAP GTGK FLEK+I+A+ S GK L ++SL
Sbjct: 406 TKQCVVVETVLDLILNSRGKVFFIDAPGGTGKTFLEKMILARICSEGKYALAVASL 461
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A4C1XXV9_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XXV9_EUMVA) HSP 1 Score: 52.8 bits (125), Expect = 3.340e-5 Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = -2
Query: 66 NNA*LMHL-TSLGKPTTLSTMSPFLRTTKQR------TVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISS 308
NN+ L L +L KP L+ ++ ++ + R T + V+ +V+ NEG +F +DAP GTGK F+ +I+AK RS GK+ L ++S
Sbjct: 104 NNSLLDPLEVALRKPYNLNDLNEYITENEPRLVNDQVTTYNCVMKSVSFNEGKIFFLDAPGGTGKTFITNLILAKVRSLGKLALAVAS 191 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8304.16328.1 >prot_H-paniculata_contig8304.16328.1 ID=prot_H-paniculata_contig8304.16328.1|Name=mRNA_H-paniculata_contig8304.16328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp MIRTILPALLHLATITFSRKILPVPIGASMMKRSPSFLVTASTTVRCTVLback to top mRNA from alignment at H-paniculata_contig8304:1428..1961+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8304.16328.1 ID=mRNA_H-paniculata_contig8304.16328.1|Name=mRNA_H-paniculata_contig8304.16328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig8304:1428..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8304:1428..1961+ >mRNA_H-paniculata_contig8304.16328.1 ID=mRNA_H-paniculata_contig8304.16328.1|Name=mRNA_H-paniculata_contig8304.16328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig8304:1428..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |