mRNA_H-paniculata_contig8286.16307.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8286.16307.1
Unique NamemRNA_H-paniculata_contig8286.16307.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.660e-19
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDD 273
            D   +FL AD+EE V+VKMAPG+   + +G  +V+ L  SLY + QSP N W TI   L E+GF+ LKS+ C+Y    +N +VI+TLYVDD
Sbjct:  372 DVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDD 462
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.050e-18
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 279
            D   AFL AD+EE V+V+MAPGY   +   + +V+ L KSL  + QSP +   TI + L E+GF  LKSD C+Y    +N +V+LTLYVDD+L
Sbjct:  411 DVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLL 503
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.010e-16
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNG-IVILTLYVDDVL 279
            D + A+L +D+EEK+YVK  PGY ++  +G  +V  L KSLY + QS  N    I  +    GF S  +DPCLY    S+G I+++ LYVDD++
Sbjct:   69 DVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEILVIVLYVDDLI 162
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: W7T201_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T201_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.190e-16
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNG-IVILTLYVDDVL 279
            D + A+L +D+EEK+YVK  PGY ++  +G  +V  L KSLY + QS  N    I  +    GF S  +DPCLY   ES+G I+++ LYVDD++
Sbjct:    2 DVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGRNWHKKIGGWFRGYGFHSSSADPCLYVKFESSGEILVIVLYVDDLI 95
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A7S1SHQ1_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S1SHQ1_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 1.510e-14
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDD 273
            D   AFL AD+EE++Y++   G+  FD +G   V  L KSLY + Q+P N   TI  +L E GF   K DP +Y   +   + +L LYVDD
Sbjct:   25 DVVTAFLEADIEEEIYMRQPEGFRHFDINGEERVCLLKKSLYGLKQAPRNWNKTITAWLEEYGFTQSKVDPGIYVFIKEGELYVLALYVDD 115
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.990e-14
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*-KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 279
            D   AFLNA  +  VYV+ APG   K   +G PMV  L +SLY + QSP+    T+   +   G+K  +SDPC+YA +  N IVILT+YVDD+L
Sbjct:  676 DVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDIL 769
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6P4PAH9_GOSAR (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4PAH9_GOSAR)

HSP 1 Score: 76.6 bits (187), Expect = 2.450e-14
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 279
            D N AFLN D++ KV+++  PG+ ++D +G P V  L K+LY + Q+P   +  +K +L  +GF   KSD  L+    S  ++ + +YVDD++
Sbjct:   31 DVNNAFLNGDLDTKVFMQQPPGFVQYDSTGQPFVCRLKKALYGLRQAPRAWFDKLKRFLVSIGFVVSKSDASLFIRITSESVLYVLVYVDDII 123
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.510e-14
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNG-IVILTLYVDDVL 279
            D   A+L +D+EEKVYVK  PGY ++  +G  +V  L KSLY + QS  N    I  +    GF    +DPCLY    S+G I+++ LYVDD++
Sbjct:   85 DVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLI 178
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.570e-14
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNG-IVILTLYVDDVL 279
            D + A+L +D+EEK+YVK  PGY +   +G  +V  L KSLY + QS  N    I  +    GF S  +DPCLY    S+G ++++ LYVDD++
Sbjct:   85 DVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIVLYVDDLI 178
[Close]
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.320e-14
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 DYNAAFLNADVEEKVYVKMAPGY*KFDESGVPMVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNG-IVILTLYVDDVL 279
            D + A+L +D+EEK+YVK  PGY ++  +G  ++  L KSLY + QS  N    I  +     F S  +DPCLY    S+G I+++ LYVDD++
Sbjct:  127 DVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSSADPCLYVKFGSSGEILVIVLYVDDLI 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUT9_9PHAE2.660e-1949.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE6.050e-1848.39Integrase catalytic domain-containing protein n=1 ... [more]
W7T9Y7_9STRA4.010e-1642.55Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
W7T201_9STRA8.190e-1643.62Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7S1SHQ1_9CHLO1.510e-1441.76Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
A0A6H5K1R7_9PHAE1.990e-1446.81Integrase catalytic domain-containing protein (Fra... [more]
A0A6P4PAH9_GOSAR2.450e-1436.56uncharacterized mitochondrial protein AtMg00810-li... [more]
W7TCB8_9STRA2.510e-1442.55Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA3.570e-1441.49Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJI6_9STRA4.320e-1440.43Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8286contigH-paniculata_contig8286:40..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.878359-UTR-H-paniculata_contig8286:39..1351622931039.878359-UTR-H-paniculata_contig8286:39..135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8286 40..135 +
1691481562.0328329-UTR-H-paniculata_contig8286:39..1351691481562.0328329-UTR-H-paniculata_contig8286:39..135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8286 40..135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.893094-CDS-H-paniculata_contig8286:135..3211622931039.893094-CDS-H-paniculata_contig8286:135..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8286 136..321 +
1691481562.041431-CDS-H-paniculata_contig8286:135..3211691481562.041431-CDS-H-paniculata_contig8286:135..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8286 136..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8286.16307.1prot_H-paniculata_contig8286.16307.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8286 136..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8286.16307.1

>prot_H-paniculata_contig8286.16307.1 ID=prot_H-paniculata_contig8286.16307.1|Name=mRNA_H-paniculata_contig8286.16307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGI
VILTLYVDDVLF
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mRNA from alignment at H-paniculata_contig8286:40..321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8286.16307.1 ID=mRNA_H-paniculata_contig8286.16307.1|Name=mRNA_H-paniculata_contig8286.16307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig8286:40..321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTACAATGCCGCATTTCTGAACGCTGACGTCGAGGAGAAGGTGTACGT
CAAGATGGCACCAGGGTACTAGAAGTTCGACGAAAGCGGAGTTCCAATGG
TAGTGACGCTTCCGAAGAGCCTCTATGATATTCACCAGAGCCCATCGAAC
CGGTGGGGGACTATCAAAACGTATCTGGCAGAGGTCGGTTTCAAAAGCCT
CAAGTCAGACCCGTGCCTTTACGCCTCCTCAGAAAGCAACGGCATTGTCA
TTTTGACCTTGTACGTCGACGACGTTCTTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig8286:40..321+

>mRNA_H-paniculata_contig8286.16307.1 ID=mRNA_H-paniculata_contig8286.16307.1|Name=mRNA_H-paniculata_contig8286.16307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig8286:40..321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGTGACGCTTCCGAAGAGCCTCTATGATATTCACCAGAGCCCATC
GAACCGGTGGGGGACTATCAAAACGTATCTGGCAGAGGTCGGTTTCAAAA
GCCTCAAGTCAGACCCGTGCCTTTACGCCTCCTCAGAAAGCAACGGCATT
GTCATTTTGACCTTGTACGTCGACGACGTTCTTTTTATGGTAGTGACGCT
TCCGAAGAGCCTCTATGATATTCACCAGAGCCCATCGAACCGGTGGGGGA
CTATCAAAACGTATCTGGCAGAGGTCGGTTTCAAAAGCCTCAAGTCAGAC
CCGTGCCTTTACGCCTCCTCAGAAAGCAACGGCATTGTCATTTTGACCTT
GTACGTCGACGACGTTCTTTTT
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