prot_H-paniculata_contig8286.16307.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8286.16307.1
Unique Nameprot_H-paniculata_contig8286.16307.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length62
Homology
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.860e-9
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            +V+ L KSL  + QSP +   TI + L E+GF  LKSD C+Y    +N +V+LTLYVDD+L
Sbjct:  443 LVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLL 503          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.380e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP+    T+   L   G+K  +SDPC+Y  +  N IVILT+YVDD+L
Sbjct:  328 MVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDIL 388          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5JHP8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.700e-8
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            +V  L  SLY + QSP+    T+   L   G+KS +SDPC+Y  +  N IVILT+YVDDVL
Sbjct:   22 LVYKLKPSLYGLSQSPALWNDTLDKSLTVFGWKSTQSDPCVYMYASGNIIVILTVYVDDVL 82          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.730e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP+    T+   L   G+K  +SDPC+Y  +  N IVILT+YVDD+L
Sbjct:    1 MVYKLERSLYGLSQSPALWSDTLDKSLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDIL 61          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.280e-8
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP+    T+   +   G+K  +SDPC+YA +  N IVILT+YVDD+L
Sbjct:  709 MVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDIL 769          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.280e-8
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP   + TI   L  +GF+  +SDPC+Y     + +VILTLYV+D+L
Sbjct:  522 MVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDIL 582          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5JD68_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD68_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.530e-8
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP+    T+   L   G+K  +SDPC+YA    N IVILT+YVDD+L
Sbjct: 1350 MVYKLERSLYGLSQSPTLWNDTLDESLTVFGWKRTQSDPCVYAYPSGNIIVILTVYVDDIL 1410          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.680e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP+    T+   L   G+K  +SDPC+Y  +  N IVILT+YVDD+L
Sbjct:  130 MVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDIL 190          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 6.840e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP+    T+   L   G+K  +SDPC+Y  +  N IVILT+YVDD+L
Sbjct:    1 MVYKLARSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDIL 61          
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Match: A0A6H5L4F0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.660e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    1 MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGIVILTLYVDDVL 61
            MV  L +SLY + QSP+    T+   L   G+K  +SDPC+Y  +  N IVILT+YVDD+L
Sbjct:  185 MVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDIL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8286.16307.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE6.860e-949.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTY2_9PHAE2.380e-847.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHP8_9PHAE2.700e-849.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KRT7_9PHAE2.730e-847.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1R7_9PHAE3.280e-847.54Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K9R3_9PHAE3.280e-845.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JD68_9PHAE4.530e-849.18Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KG29_9PHAE5.680e-847.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE6.840e-847.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4F0_9PHAE7.660e-847.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..61
e-value: 2.6E-9
score: 37.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8286contigH-paniculata_contig8286:136..321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8286.16307.1mRNA_H-paniculata_contig8286.16307.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8286 40..321 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8286.16307.1 ID=prot_H-paniculata_contig8286.16307.1|Name=mRNA_H-paniculata_contig8286.16307.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MVVTLPKSLYDIHQSPSNRWGTIKTYLAEVGFKSLKSDPCLYASSESNGI
VILTLYVDDVLF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2