mRNA_H-paniculata_contig82770.16298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82770.16298.1
Unique NamemRNA_H-paniculata_contig82770.16298.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig82770.16298.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-6
Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 MEPGQDPDDFFFVLEECRQTLENMGQTVHDKRYEDIVLQALPTEYERV 144
            MEPG +PDDFF+     R  LE MG+T+ D+R++DI +Q    +Y+ +
Sbjct:    1 MEPGDNPDDFFYKQHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDI 48
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82770.16298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4Y1_9PHAE1.490e-643.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82770contigH-paniculata_contig82770:110..256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.918684-CDS-H-paniculata_contig82770:109..2561622931038.918684-CDS-H-paniculata_contig82770:109..256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82770 110..256 -
1691481561.6172676-CDS-H-paniculata_contig82770:109..2561691481561.6172676-CDS-H-paniculata_contig82770:109..256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82770 110..256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82770.16298.1prot_H-paniculata_contig82770.16298.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82770 110..256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82770.16298.1

>prot_H-paniculata_contig82770.16298.1 ID=prot_H-paniculata_contig82770.16298.1|Name=mRNA_H-paniculata_contig82770.16298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MEPGQDPDDFFFVLEECRQTLENMGQTVHDKRYEDIVLQALPTEYERV*
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mRNA from alignment at H-paniculata_contig82770:110..256-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82770.16298.1 ID=mRNA_H-paniculata_contig82770.16298.1|Name=mRNA_H-paniculata_contig82770.16298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig82770:110..256- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCTGGCCAGGATCCTGACGACTTCTTCTTCGTCTTAGAAGAATG
TCGCCAAACTCTCGAGAACATGGGGCAGACGGTGCACGACAAGCGCTACG
AGGATATTGTTCTCCAAGCTCTTCCTACCGAATATGAAAGGGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig82770:110..256-

>mRNA_H-paniculata_contig82770.16298.1 ID=mRNA_H-paniculata_contig82770.16298.1|Name=mRNA_H-paniculata_contig82770.16298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig82770:110..256- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCTGGCCAGGATCCTGACGACTTCTTCTTCGTCTTAGAAGAATG
TCGCCAAACTCTCGAGAACATGGGGCAGACGGTGCACGACAAGCGCTACG
AGGATATTGTTCTCCAAGCTCTTCCTACCGAATATGAAAGGGTGTGAATG
GAGCCTGGCCAGGATCCTGACGACTTCTTCTTCGTCTTAGAAGAATGTCG
CCAAACTCTCGAGAACATGGGGCAGACGGTGCACGACAAGCGCTACGAGG
ATATTGTTCTCCAAGCTCTTCCTACCGAATATGAAAGGGTGTGA
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