mRNA_H-paniculata_contig82699.16288.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82699.16288.1
Unique NamemRNA_H-paniculata_contig82699.16288.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: UPI0003592D34 (armadillo repeat-containing protein 2 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI0003592D34)

HSP 1 Score: 89.4 bits (220), Expect = 7.530e-18
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLEVHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYC-----GRLAMGGDGDTPPAS----------------VLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+L+K TL+  C + +       +  + +L+ H    ++V+RLCF LGNLT  ND  R  L  ++ ++  L  ++ TYC     G+ +  GDG+    +                VL+  +RV+ANL+++ +VGPAI    D V  L+S+VE  DV   EE+++N V AV N
Sbjct:  472 RILSKITLHTDCCSVLANQHSCYRAFVNLLKQHLLKDDLVVRLCFVLGNLTIKNDSARLKLFQEIDSIETLLNILKTYCELDRQGKTSASGDGEESQLNGGVDGESETEVNKVEDVLIKVMRVLANLSVNEDVGPAIAANPDFVELLISVVEDKDVAHHEEVVVNAVVAVNN 643          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: W4HAE1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAE1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.830e-17
Identity = 64/159 (40.25%), Postives = 94/159 (59.12%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLE----VHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGRLAMGG-DGDTPPAS---VLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+L+K TL++A R  VN    +L+ +L++L+      ++   +V+RL F LGNLTATND NR A+V  L A+P L  ++  Y  R      D DT  A+   VLV  VR++AN A+   VGP +L    G+  L+ +++   V   EELMLNVV+ +TN
Sbjct:  418 RILSKLTLHEAGRTQVNKGKHNLRHLLKLLDGDTRSRQQDAALVIRLAFILGNLTATNDRNRKAIV-TLGAVPPLVRMLKEYHIRYVHESPDNDTSAATAEDVLVKLVRLLANAAIHTSVGP-MLGTVPGIEVLLDVLDHAKVARHEELMLNVVSCLTN 574          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: A0A6A4ZAS0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZAS0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.180e-16
Identity = 63/159 (39.62%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLE----VHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGRLAMGG-DGDTPPAS---VLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+L+K TL++A R  VN    +L+ +L++L+      ++   +V+RL F LGNLTATND NR A+V  L A+P L  ++  Y  R      D DT   +   VLV  VR++AN A+   VGP +L    G+  L+ +++   V   EELMLNVV+ +TN
Sbjct:   67 RILSKLTLHEAGRTQVNKGKHNLRHLLKLLDGDTRSRQQDAALVIRLAFILGNLTATNDRNRKAIV-TLGAVPPLVRMLKEYHIRYVHESPDNDTSATTAEDVLVKLVRLLANAAIHTSVGP-MLGTVPGIEVLLDVLDHAKVARHEELMLNVVSCLTN 223          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: A0A2T7P4Z0_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7P4Z0_POMCA)

HSP 1 Score: 85.1 bits (209), Expect = 2.270e-16
Identity = 58/167 (34.73%), Postives = 86/167 (51.50%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLEVHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGRLAMGG---------DGDTPPAS-------VLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+ +K TL+  C  ++    G  K  + +L+ + +  ++V+RLCF LGNLTA N+  R  L  +  AL  L  V+ TY      G          D  T   S       VL+  +RV+ANL++S +VGP I      + NL+ ++E  D+   EEL+LN VAAV N
Sbjct:  484 RIFSKVTLHTDCSTALADQHGCYKSFVSLLKRYLKKEDLVVRLCFVLGNLTAKNEQARQRLFQEKDALDVLLNVLRTYNDMDKQGAHEVPAEPPLDESTENTSSINKVEDVLIKVIRVLANLSISEDVGPFIAASPQCITNLLHIIERKDITESEELILNCVAAVNN 650          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: A0A397A9S5_9STRA (Uncharacterized protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A9S5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.870e-16
Identity = 63/159 (39.62%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLE----VHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGRLAMGG-DGDTPPAS---VLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+L+K TL++A R  VN    +L+ +L++L+      ++   +V+RL F LGNLTATND NR A+V  L A+P L  ++  Y  R      D DT   +   VLV  VR++AN A+   VGP +L    G+  L+ +++   V   EELMLNVV+ +TN
Sbjct:  208 RILSKLTLHEAGRTQVNKGKHNLRHLLKLLDGDTRSRQQDAALVIRLAFILGNLTATNDRNRKAIV-TLGAVPPLVRMLKEYHIRYVHESPDNDTSATTAEDVLVKLVRLLANAAIHTSVGP-MLGTVPGIEVLLDVLDHAKVARHEELMLNVVSCLTN 364          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: A0A1V9ZG87_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG87_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.620e-16
Identity = 61/172 (35.47%), Postives = 90/172 (52.33%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLE-------VHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGRLAMGGDGDTPPA--------------SVLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            RVL+K TL++A R  +N +P +L  ++++L+        HR    +++RLCF LGNLTA+ND NR  L + L A+P L  ++  Y    A       PP                VLV  VR++ANL+++A  GP +     G+  L+ L+        EEL LNVV+ VTN
Sbjct:  388 RVLSKLTLHEAGRTQLNKAPETLGHLVQLLDRSSAAAAPHRFQAALLVRLCFVLGNLTASNDKNRKLLAVQLRAVPVLVRILRQYGALYAQ--QAPKPPXXXXXXXXXXXXXSEDVLVKLVRLLANLSINATAGP-LAAAAPGIDALLELLAHASACGHEELKLNVVSCVTN 556          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: F0YDU6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU6_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 5.620e-16
Identity = 58/168 (34.52%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLEVHREA-----------------PEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGRLAMGGDGDTPPASVLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R LAK +L++  R +++  P  L  +L  LE   E                  P VVLRL F+LGNLTA+ND NR  L +D      L A+++        GG GD     VL+  +R+VAN++++ +VG  +     GV +L  L+      + EEL+LN+V+A+TN
Sbjct:  370 RALAKLSLHEPTRTALHGDPKRLGDVLATLEAAHEGALALGGTAEPSDALAPMPAVVLRLAFALGNLTASNDANRVVLGIDHGGALPLVAMLEKSGAAFLAGGGGDDAE-QVLIKLIRLVANMSINPDVGVLVAN-APGVRSLTRLLRVALDRSREELVLNIVSAITN 535          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: A0A210QY65_MIZYE (Armadillo repeat-containing protein 2 n=4 Tax=Pectinidae TaxID=6566 RepID=A0A210QY65_MIZYE)

HSP 1 Score: 83.2 bits (204), Expect = 1.060e-15
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLEVHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYC-------GRLAMGGDGD-----TPPASVLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+ +K TL+  C   +   P S K  + +L  H +  ++V+R+CF LGN+TA ND  R  L  +  A   L +V+  Y        G+     +G+          V++  VRV+ANL+++  VGP I      +  L+S++E  ++ A EEL+LN VA + N
Sbjct:  492 RIFSKITLHTDCCTVLADQPSSYKSFINLLNKHLQKSDMVVRVCFVLGNITAKNDEARVRLYQENKAFDVLLSVLKLYLEMDIKAQGKEEKSEEGERGNKLNKREDVMIKVVRVIANLSINETVGPLIASNAQCIDLLLSILEYKEISASEELVLNTVATINN 654          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: A0A6J8AR73_MYTCO (ARMC2 n=4 Tax=Mytilus TaxID=6548 RepID=A0A6J8AR73_MYTCO)

HSP 1 Score: 81.6 bits (200), Expect = 3.690e-15
Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLEVHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGR-----------------LAMGGDGDTPPASVLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+ +K TL+  C  ++   P + K  + +L   +   +VV+R+CF LGN+TA ND  R  L  +  ++ AL A++  Y  R                  + G D +     VL+  VRVVAN++++  VGP +      V  L++++E  DV + EEL LN VA + N
Sbjct:  504 RIFSKVTLHTDCCMALITQPSAYKSFIHLLNKQQHKADVVVRVCFILGNMTAKNDDARLRLFQENKSMEALLAIMKYYLDRDIKIRSRVKEKETSKQDSSKGNDCE----DVLIKTVRVVANMSINEMVGPVLASNHQFVELLLNILECKDVQSSEELSLNTVATINN 667          
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Match: UPI00201F2127 (armadillo repeat-containing protein 2-like isoform X1 n=6 Tax=Haliotis TaxID=6452 RepID=UPI00201F2127)

HSP 1 Score: 80.5 bits (197), Expect = 9.280e-15
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 1
Query:    1 RVLAKATLNDACRASVNASPGSLKCILRMLEVHREAPEVVLRLCFSLGNLTATNDGNRAALVLDLVALPALFAVIDTYCGRLAM---------------GGDGDTPPAS---VLVNAVRVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVTN 453
            R+ +K TL+  C   +       K  + +L  H    +VV+R+CF LGN+TA ND  R  L  +  A+P L +V+ T+    +                  DGD    +   VL+  +RV+ANL+++  VGP I    + V  L++++++ D+ + EEL+LN VA + N
Sbjct:  498 RIFSKVTLHTDCCTVLANEHSCYKSFIHLLNRHVNKEDVVVRVCFVLGNITAKNDDARRRLFQETNAMPTLLSVLKTFHNLESQKRSKPENVTTNGRHNNNDGDGAVNTIDDVLIKVIRVIANLSINDSVGPIIASHVECVQLLLAILDSKDIGSSEELILNTVATINN 666          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82699.16288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003592D347.530e-1833.14armadillo repeat-containing protein 2 isoform X1 n... [more]
W4HAE1_9STRA8.830e-1740.25Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A4ZAS0_9STRA2.180e-1639.62Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2T7P4Z0_POMCA2.270e-1634.73Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
A0A397A9S5_9STRA2.870e-1639.62Uncharacterized protein n=11 Tax=Aphanomyces astac... [more]
A0A1V9ZG87_9STRA5.620e-1635.47Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
F0YDU6_AURAN5.620e-1634.52Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A210QY65_MIZYE1.060e-1531.90Armadillo repeat-containing protein 2 n=4 Tax=Pect... [more]
A0A6J8AR73_MYTCO3.690e-1531.55ARMC2 n=4 Tax=Mytilus TaxID=6548 RepID=A0A6J8AR73_... [more]
UPI00201F21279.280e-1530.77armadillo repeat-containing protein 2-like isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82699contigH-paniculata_contig82699:1..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score89.7
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog6500.XP_005102120.1
Preferred nameARMC2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Armadillo repeat containing 2
EggNOG OGs39TIX@33154,3BD3D@33208,3CUAJ@33213,KOG1048@1,KOG1048@2759
COG Functional cat.TW
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.980597-CDS-H-paniculata_contig82699:0..3911622931037.980597-CDS-H-paniculata_contig82699:0..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82699 1..391 +
1691481561.231286-CDS-H-paniculata_contig82699:0..3911691481561.231286-CDS-H-paniculata_contig82699:0..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82699 1..391 +
1622931038.006227-CDS-H-paniculata_contig82699:443..5051622931038.006227-CDS-H-paniculata_contig82699:443..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82699 444..505 +
1691481561.2407308-CDS-H-paniculata_contig82699:443..5051691481561.2407308-CDS-H-paniculata_contig82699:443..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82699 444..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82699.16288.1prot_H-paniculata_contig82699.16288.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82699 1..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82699.16288.1

>prot_H-paniculata_contig82699.16288.1 ID=prot_H-paniculata_contig82699.16288.1|Name=mRNA_H-paniculata_contig82699.16288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
RVLAKATLNDACRASVNASPGSLKCILRMLEVHREAPEVVLRLCFSLGNL
TATNDGNRAALVLDLVALPALFAVIDTYCGRLAMGGDGDTPPASVLVNAV
RVVANLAMSAEVGPAILEFGDGVVNLVSLVETVDVHAEEELMLNVVAAVT
N
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mRNA from alignment at H-paniculata_contig82699:1..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82699.16288.1 ID=mRNA_H-paniculata_contig82699.16288.1|Name=mRNA_H-paniculata_contig82699.16288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=505bp|location=Sequence derived from alignment at H-paniculata_contig82699:1..505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGTGCTGGCAAAGGCCACCCTGAACGACGCCTGCCGGGCGAGTGTCAA CGCGTCCCCCGGCAGCCTGAAGTGCATCCTGCGCATGCTGGAGGTGCACC GGGAGGCGCCAGAGGTCGTGCTGCGCCTGTGTTTCTCCCTGGGGAACCTG ACGGCCACCAACGACGGCAACCGCGCGGCTCTAGTGTTGGACCTAGTCGC GCTACCCGCCCTGTTTGCCGTCATTGACACGTACTGCGGGCGGCTTGCCA TGGGCGGGGACGGCGACACGCCGCCCGCAAGCGTCCTCGTCAACGCCGTT CGCGTGGTGGCAAACTTGGCCATGTCGGCAGAGGTTGGGCCTGCGATTTT GGAGTTTGGGGATGGCGTGGTGAACCTGGTGTCATTAGTCGGTGGGTGCC CTTTGCATTTCGTGGTTGTTGCACGTGCATGACTGTTCCCCAGAAACCGT TGACGTCCACGCCGAAGAGGAGCTCATGCTGAACGTGGTGGCGGCTGTCA CCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig82699:1..505+

>mRNA_H-paniculata_contig82699.16288.1 ID=mRNA_H-paniculata_contig82699.16288.1|Name=mRNA_H-paniculata_contig82699.16288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig82699:1..505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGTGCTGGCAAAGGCCACCCTGAACGACGCCTGCCGGGCGAGTGTCAA
CGCGTCCCCCGGCAGCCTGAAGTGCATCCTGCGCATGCTGGAGGTGCACC
GGGAGGCGCCAGAGGTCGTGCTGCGCCTGTGTTTCTCCCTGGGGAACCTG
ACGGCCACCAACGACGGCAACCGCGCGGCTCTAGTGTTGGACCTAGTCGC
GCTACCCGCCCTGTTTGCCGTCATTGACACGTACTGCGGGCGGCTTGCCA
TGGGCGGGGACGGCGACACGCCGCCCGCAAGCGTCCTCGTCAACGCCGTT
CGCGTGGTGGCAAACTTGGCCATGTCGGCAGAGGTTGGGCCTGCGATTTT
GGAGTTTGGGGATGGCGTGGTGAACCTGGTGTCATTAGTCGCGGGTGCTG
GCAAAGGCCACCCTGAACGACGCCTGCCGGGCGAGTGTCAACGCGTCCCC
CGGCAGCCTGAAGTGCATCCTGCGCATGCTGGAGGTGCACCGGGAGGCGC
CAGAGGTCGTGCTGCGCCTGTGTTTCTCCCTGGGGAACCTGACGGCCACC
AACGACGGCAACCGCGCGGCTCTAGTGTTGGACCTAGTCGCGCTACCCGC
CCTGTTTGCCGTCATTGACACGTACTGCGGGCGGCTTGCCATGGGCGGGG
ACGGCGACACGCCGCCCGCAAGCGTCCTCGTCAACGCCGTTCGCGTGGTG
GCAAACTTGGCCATGTCGGCAGAGGTTGGGCCTGCGATTTTGGAGTTTGG
GGATGGCGTGGTGAACCTGGTGTCATTAGTCGAAACCGTTGACGTCCACG
CCGAAGAGGAGCTCATGCTGAACGTGGTGGCGGCTGTCACCAACAAACCG
TTGACGTCCACGCCGAAGAGGAGCTCATGCTGAACGTGGTGGCGGCTGTC
ACCAAC
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