mRNA_H-paniculata_contig8265.16285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8265.16285.1
Unique NamemRNA_H-paniculata_contig8265.16285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8265.16285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8265contigH-paniculata_contig8265:1494..2302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size809
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.6782007-CDS-H-paniculata_contig8265:1493..19791622931037.6782007-CDS-H-paniculata_contig8265:1493..1979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8265 1494..1979 +
1691481561.1762803-CDS-H-paniculata_contig8265:1493..19791691481561.1762803-CDS-H-paniculata_contig8265:1493..1979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8265 1494..1979 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.6998549-UTR-H-paniculata_contig8265:1979..23021622931037.6998549-UTR-H-paniculata_contig8265:1979..2302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8265 1980..2302 +
1691481561.1846607-UTR-H-paniculata_contig8265:1979..23021691481561.1846607-UTR-H-paniculata_contig8265:1979..2302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8265 1980..2302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8265.16285.1prot_H-paniculata_contig8265.16285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8265 1494..1979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8265.16285.1

>prot_H-paniculata_contig8265.16285.1 ID=prot_H-paniculata_contig8265.16285.1|Name=mRNA_H-paniculata_contig8265.16285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
GGAAGKVRGEGRGCHPSQVLGSASPPGVAPRVSGGGVGGVPGHEARRTVS
SRAIGPNDARSLSVRVDGLGGLCSGGFGPCHASSQSAGEKSSDHSAVESG
RRGASGGDAMPQQVQAADAAGADCSWLNEDTSDEFAHFLNDIVDSEFSLE
GVGSMAAGVFT*
back to top

mRNA from alignment at H-paniculata_contig8265:1494..2302+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8265.16285.1 ID=mRNA_H-paniculata_contig8265.16285.1|Name=mRNA_H-paniculata_contig8265.16285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=809bp|location=Sequence derived from alignment at H-paniculata_contig8265:1494..2302+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGCTGCTGGTAAGGTTCGGGGAGAGGGGAGAGGGTGTCACCCTTC
TCAAGTCCTCGGGTCTGCGTCTCCTCCTGGCGTGGCCCCGAGGGTCAGCG
GAGGTGGCGTCGGCGGGGTACCAGGTCATGAAGCAAGAAGGACTGTGTCA
AGCCGTGCGATTGGACCGAACGACGCGAGATCGTTGTCTGTTCGTGTAGA
TGGCCTCGGCGGTCTGTGTAGTGGTGGTTTTGGTCCGTGTCATGCTTCTT
CTCAGTCGGCTGGCGAGAAGTCGAGTGACCATAGTGCGGTTGAAAGCGGG
CGCCGGGGCGCTTCGGGCGGGGACGCGATGCCGCAGCAGGTCCAAGCCGC
GGATGCGGCCGGCGCCGATTGCTCTTGGCTCAACGAAGATACGTCGGACG
AGTTTGCACATTTCTTGAACGACATTGTGGACAGCGAGTTCTCGCTGGAG
GGTGTTGGCTCGATGGCTGCAGGGGTGTTCACTTAAAATAACGGTATATA
AGTGTTTTATTTATGCGTACAGTAAGTATAGTAGGGAGATTTTTGTTTTC
TTCGTTTTGAATTTTTCAGCCGCCCTTTTTTCGTGATGCCACCGCGCTGA
GTGGTGTCTCTGTTTCATGGGGTATTCGAGCGTGTCCTCCTTCCGTATTT
GGGTGAAAATTAATGTCAAGCCTTGGTTTGGGTGTTTCTTTTTTGTTGCT
TTTAATTTTATTTTTTTTGTATCTCTGTGGTGAGGGTGAATTTTTTCATT
CGTTCCATGAGAAATGTGCTTCATCTTTTTGAGGTAAACACAATCTATAT
ACATGTACA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8265:1494..2302+

>mRNA_H-paniculata_contig8265.16285.1 ID=mRNA_H-paniculata_contig8265.16285.1|Name=mRNA_H-paniculata_contig8265.16285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig8265:1494..2302+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGCTGCTGGTAAGGTTCGGGGAGAGGGGAGAGGGTGTCACCCTTC
TCAAGTCCTCGGGTCTGCGTCTCCTCCTGGCGTGGCCCCGAGGGTCAGCG
GAGGTGGCGTCGGCGGGGTACCAGGTCATGAAGCAAGAAGGACTGTGTCA
AGCCGTGCGATTGGACCGAACGACGCGAGATCGTTGTCTGTTCGTGTAGA
TGGCCTCGGCGGTCTGTGTAGTGGTGGTTTTGGTCCGTGTCATGCTTCTT
CTCAGTCGGCTGGCGAGAAGTCGAGTGACCATAGTGCGGTTGAAAGCGGG
CGCCGGGGCGCTTCGGGCGGGGACGCGATGCCGCAGCAGGTCCAAGCCGC
GGATGCGGCCGGCGCCGATTGCTCTTGGCTCAACGAAGATACGTCGGACG
AGTTTGCACATTTCTTGAACGACATTGTGGACAGCGAGTTCTCGCTGGAG
GGTGTTGGCTCGATGGCTGCAGGGGTGTTCACTTAAGGGGGGGCTGCTGG
TAAGGTTCGGGGAGAGGGGAGAGGGTGTCACCCTTCTCAAGTCCTCGGGT
CTGCGTCTCCTCCTGGCGTGGCCCCGAGGGTCAGCGGAGGTGGCGTCGGC
GGGGTACCAGGTCATGAAGCAAGAAGGACTGTGTCAAGCCGTGCGATTGG
ACCGAACGACGCGAGATCGTTGTCTGTTCGTGTAGATGGCCTCGGCGGTC
TGTGTAGTGGTGGTTTTGGTCCGTGTCATGCTTCTTCTCAGTCGGCTGGC
GAGAAGTCGAGTGACCATAGTGCGGTTGAAAGCGGGCGCCGGGGCGCTTC
GGGCGGGGACGCGATGCCGCAGCAGGTCCAAGCCGCGGATGCGGCCGGCG
CCGATTGCTCTTGGCTCAACGAAGATACGTCGGACGAGTTTGCACATTTC
TTGAACGACATTGTGGACAGCGAGTTCTCGCTGGAGGGTGTTGGCTCGAT
GGCTGCAGGGGTGTTCACTTAA
back to top