mRNA_H-paniculata_contig8254.16272.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8254.16272.1
Unique NamemRNA_H-paniculata_contig8254.16272.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 1.110e-138
Identity = 210/229 (91.70%), Postives = 221/229 (96.51%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDDPHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            VFNGSTPKTPLIFVLS GVDPTAQVQSLSVAQGVKM+NVALGQGQAPAAIRMI+DG   GNWVFLANCHLMLSWMP LEKIVED+CV +PH DFRLWLSS P+PKFPISILRRGLKMTTEPPAGLRAN++TLYN+VSPEQFSRCGQTFRYRKLLF+L+WFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYP+KPPFDAMRYLIAEANYGGRVTDEWDRR
Sbjct: 4142 VFNGSTPKTPLIFVLSPGVDPTAQVQSLSVAQGVKMSNVALGQGQAPAAIRMIEDGVSFGNWVFLANCHLMLSWMPELEKIVEDLCVGEPHEDFRLWLSSGPHPKFPISILRRGLKMTTEPPAGLRANVSTLYNIVSPEQFSRCGQTFRYRKLLFSLAWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPDKPPFDAMRYLIAEANYGGRVTDEWDRR 4370
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A6H5KP60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP60_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 3.170e-123
Identity = 190/213 (89.20%), Postives = 202/213 (94.84%), Query Frame = 1 
Query:   61 DPTA---QVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDDPHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            DP A   +VQSLSVAQGVKM+NVALGQGQAPAAIRMI+DG   GNWVFLANCHLMLSWMP LEKIVED+CV +PH DFRLWLSS P+PKFPISILRRGLKMTTEPPAGLRAN++TLYN+VSPEQFSRCGQTFRYRKLLF+L+WFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYP+KPPFDAMRYLIAEANYGGRVTDEWDRR
Sbjct: 3293 DPPAFDLKVQSLSVAQGVKMSNVALGQGQAPAAIRMIEDGVSFGNWVFLANCHLMLSWMPELEKIVEDLCVGEPHEDFRLWLSSGPHPKFPISILRRGLKMTTEPPAGLRANVSTLYNIVSPEQFSRCGQTFRYRKLLFSLAWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPDKPPFDAMRYLIAEANYGGRVTDEWDRR 3505
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A812ZAN9_SYMMI (DHC10 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZAN9_SYMMI)

HSP 1 Score: 347 bits (889), Expect = 3.180e-116
Identity = 161/229 (70.31%), Postives = 189/229 (82.53%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDDPHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            V+  S  KTPLIFVLS GVDPTA +  L+   G  + N ALGQGQAP A+RMI +G   GNWVFLANCHLMLSWMP LEK++E     +PHP+FRLW+SS+P+P FPI++L+RG+KMTTEPP GLRAN+ TLYN +  EQF RC Q   YR+LLFAL WFHAILLERRKFKSLGFN+PY+FNESDF+ICHDL+IVFLDEYP + PFDAM+YLIAEANYGGRVTD++DRR
Sbjct:   71 VYETSNNKTPLIFVLSPGVDPTAGIFQLAAQLGQTVENCALGQGQAPTAVRMINEGLASGNWVFLANCHLMLSWMPTLEKMIEAYIEGNPHPNFRLWISSSPDPNFPITVLQRGIKMTTEPPRGLRANLQTLYNTIGDEQFHRCNQKSAYRRLLFALVWFHAILLERRKFKSLGFNIPYDFNESDFAICHDLIIVFLDEYPARIPFDAMKYLIAEANYGGRVTDDFDRR 299
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA)

HSP 1 Score: 364 bits (934), Expect = 1.810e-112
Identity = 173/231 (74.89%), Postives = 200/231 (86.58%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDDP--HPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            V+ GS   TPL+FVLS GVDPTAQVQ+L+ + G ++  VALGQGQAP A+ ++Q+ +REG W FLANCHLMLSWMP LEK V  + +D P  HP FRLWLSSAPNPKFPI+IL+RG+KMTTEPP+GLRAN+ATLYN V+PE+F+ CGQ  RYRKLLFAL WFHA+LLERRKFKSLGFNVPYEFNESDFSICHDL+IVFLDEYP++ PFDA+ YLIAEANYGGRVTDEWDRR
Sbjct: 3990 VYAGSAAATPLVFVLSPGVDPTAQVQALAASLGARLDTVALGQGQAPTALALLQEAAREGRWAFLANCHLMLSWMPELEKAVGAL-LDGPGLHPGFRLWLSSAPNPKFPIAILQRGIKMTTEPPSGLRANIATLYNTVTPEKFAECGQPARYRKLLFALCWFHAVLLERRKFKSLGFNVPYEFNESDFSICHDLIIVFLDEYPDRTPFDAICYLIAEANYGGRVTDEWDRR 4219
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A7S1XUA6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUA6_9STRA)

HSP 1 Score: 350 bits (898), Expect = 1.490e-110
Identity = 165/230 (71.74%), Postives = 191/230 (83.04%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMC-VDDPHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            ++  S   TPLIFVLS GVDPTA V +L+    + + N ALGQGQAP A+RM+++G R GNWVFLANCHLMLSWM  LEKI+E+     + HP +RLWLSS P PKFPI+IL+RG+KMTTEPP GLRANM  LYN+V+ EQF RCGQ  +YRKLLF+L WFHAILLERRKFKSLGFN+PYEFNESDF+ICHDL+IVFLDEYPE  PF+AMRYLIAEANYGGRVTD+WDRR
Sbjct:  447 IYKTSNSYTPLIFVLSPGVDPTANVFTLAKQMNIHVDNCALGQGQAPTAVRMLENGLRSGNWVFLANCHLMLSWMTSLEKIIENYIEAQNAHPSYRLWLSSTPAPKFPITILQRGIKMTTEPPRGLRANMLKLYNIVTDEQFERCGQQHKYRKLLFSLCWFHAILLERRKFKSLGFNIPYEFNESDFAICHDLIIVFLDEYPEVTPFEAMRYLIAEANYGGRVTDDWDRR 676
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A482S4J3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4J3_9ARCH)

HSP 1 Score: 358 bits (919), Expect = 1.860e-110
Identity = 164/229 (71.62%), Postives = 196/229 (85.59%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDDPHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            V+  S  KTPLIFVLS GVDPTA +  L+ + G K+ N ALGQGQAP A+RMI+DG ++GNWVFLANCHLMLSWMP LEK++E +    PH  FRLWLSS+P+P FPI+IL+RG+KMTTEPP GLR+NM TLYN +S +QF+RCG    Y++LLFAL+WFHAILLERRKFKSLGFN+PY+FNESDF+ICHDL+IVFLDEYP++ PFDAM+YLIAEANYGGRVTD+WDRR
Sbjct: 3023 VYETSNNKTPLIFVLSPGVDPTAGIFQLAASLGQKVDNCALGQGQAPTAVRMIEDGVQQGNWVFLANCHLMLSWMPTLEKMIEALIEGSPHSKFRLWLSSSPDPSFPITILQRGIKMTTEPPKGLRSNMLTLYNTISDDQFTRCGHPSSYKRLLFALAWFHAILLERRKFKSLGFNIPYDFNESDFAICHDLIIVFLDEYPDRVPFDAMKYLIAEANYGGRVTDDWDRR 3251
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A7S1CJP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJP2_9STRA)

HSP 1 Score: 340 bits (871), Expect = 1.930e-109
Identity = 157/230 (68.26%), Postives = 190/230 (82.61%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVD-DPHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            +++ ST KTPLIFVLS GVDPT QVQ+L+   GVK+ + ALGQGQAP A +MI+DG   GNWVFL NCHL +SWMP LEKIVE  C   DPHP+FRLWLSS P PKFPISIL+RG+KMTTEPP G++ANM  LYN V+ E F+RC Q  +Y++LLF L WFHA+LLERRKFK+LG+N+PY+FN +DFSIC D+V ++LD YPEK P+DA+RYLIAEANYGGR+TD+WDRR
Sbjct:  151 IYDTSTNKTPLIFVLSPGVDPTRQVQALAEVMGVKLDSCALGQGQAPIATQMIEDGLAVGNWVFLQNCHLSVSWMPTLEKIVETYCTTGDPHPEFRLWLSSDPTPKFPISILQRGVKMTTEPPRGIKANMLRLYNSVTEEMFARCTQATKYKRLLFCLCWFHAVLLERRKFKALGWNIPYDFNNADFSICEDIVALYLDGYPEKTPWDAIRYLIAEANYGGRITDDWDRR 380
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A7S2GW99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GW99_9STRA)

HSP 1 Score: 343 bits (879), Expect = 1.890e-107
Identity = 158/230 (68.70%), Postives = 189/230 (82.17%), Query Frame = 1 
Query:    1 MVFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDDPHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            +++  ST  TPLIF+LS GVDPTAQV  LS   G  +AN ALGQGQ P A+ M+ +G+R G+WV LANCHLM+SWM  LEK+++     DPHPD+RLWLSS+PNP FPISIL++G+KMTTEPP GLRANM  LYN VS + FS+C    +Y+KLLF+LSWFHA+LLERRKFKSLGFN+PYEFNESDF+ICHD++IVFLDEYP+  P DAMRYLIAEANYGGRVTD+ DRR
Sbjct:  518 LIYKTSTATTPLIFILSPGVDPTAQVMQLSEELGRNLANCALGQGQGPVAVDMVNEGTRNGSWVLLANCHLMISWMTNLEKLIDQYSEADPHPDYRLWLSSSPNPMFPISILQKGVKMTTEPPRGLRANMLKLYNTVSDDLFSKCQAQTKYKKLLFSLSWFHAVLLERRKFKSLGFNIPYEFNESDFAICHDIIIVFLDEYPDATPIDAMRYLIAEANYGGRVTDDKDRR 747
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A813A0F5_9DINO (DHC10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A0F5_9DINO)

HSP 1 Score: 330 bits (845), Expect = 6.550e-106
Identity = 148/230 (64.35%), Postives = 194/230 (84.35%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDD-PHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            +FN ST KTPL+FVLS GVDPT  ++ L+ ++G+K+   ALGQGQAP A RM+ DG  +GNWVFL NCHL +SWMP LEK++ED C +  PH +FRLWLSS+P+PKFPISIL+RG+K+TTEPP GL+AN+A LYN +S EQF+RCG+  +Y++LLF L WFH++LLERRKFK+LG+N+PY+FN+SDF IC D++ ++LDEY E+ P++A+RYLIAEANYGGR+TD+WDRR
Sbjct:  112 IFNESTNKTPLVFVLSPGVDPTETIRKLAESEGMKLEMCALGQGQAPIATRMLTDGIAQGNWVFLQNCHLSISWMPTLEKMIEDYCTEGKPHKNFRLWLSSSPHPKFPISILQRGIKITTEPPRGLKANLARLYNTISKEQFNRCGEHQKYQRLLFCLCWFHSVLLERRKFKALGWNIPYDFNDSDFLICEDILALYLDEY-EETPWEAIRYLIAEANYGGRITDDWDRR 340
[Close]
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Match: A0A8J2WYK5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK5_9STRA)

HSP 1 Score: 335 bits (860), Expect = 1.600e-102
Identity = 164/235 (69.79%), Postives = 190/235 (80.85%), Query Frame = 1 
Query:    4 VFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAAIRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCV--DD----PHPDFRLWLSSAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFRYRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDEYPEKPPFDAMRYLIAEANYGGRVTDEWDRR 690
            +F  S  +TPLIFVLS GVDPTAQV+SL+      +   ALGQGQAP A+ ++  G R G+WVFLANCHLMLSWMP LEK + + C   +D    PH DFRLWLS++P+PKFPI+IL+RG+KMTTEPP GLRANM  LYNLV  EQF RC Q  +Y++LLF+L WFHA+LLERRKFKSLGFNVPYEFNESD+SICHDLVIVFLDEYP++ PFDAMRYLIAEANYGGRVTD  DRR
Sbjct: 3918 IFQSSNHRTPLIFVLSPGVDPTAQVKSLANDLSTNVDICALGQGQAPVAMSLMNLGLRSGSWVFLANCHLMLSWMPELEKRIAEYCAMTEDMPHAPHCDFRLWLSASPSPKFPIAILQRGIKMTTEPPRGLRANMLKLYNLVGEEQFGRCQQRLKYQRLLFSLCWFHALLLERRKFKSLGFNVPYEFNESDYSICHDLVIVFLDEYPDETPFDAMRYLIAEANYGGRVTDAMDRR 4152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8254.16272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX3_ECTSI1.110e-13891.70Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
A0A6H5KP60_9PHAE3.170e-12389.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812ZAN9_SYMMI3.180e-11670.31DHC10 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A835Z4V1_9STRA1.810e-11274.89Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1XUA6_9STRA1.490e-11071.74Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482S4J3_9ARCH1.860e-11071.62Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1CJP2_9STRA1.930e-10968.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2GW99_9STRA1.890e-10768.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A813A0F5_9DINO6.550e-10664.35DHC10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A8J2WYK5_9STRA1.600e-10269.79Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8254contigH-paniculata_contig8254:3741..6312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.5
Seed ortholog evalue9.7e-121
Seed eggNOG ortholog2880.D7FWX3
Preferred nameDNAH2
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons5
Model size693
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8254.16272.1prot_H-paniculata_contig8254.16272.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8254 3741..6312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.8979342-CDS-H-paniculata_contig8254:3740..38151622931035.8979342-CDS-H-paniculata_contig8254:3740..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 3741..3815 +
1691481560.3805947-CDS-H-paniculata_contig8254:3740..38151691481560.3805947-CDS-H-paniculata_contig8254:3740..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 3741..3815 +
1622931035.9145164-CDS-H-paniculata_contig8254:4485..46531622931035.9145164-CDS-H-paniculata_contig8254:4485..4653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 4486..4653 +
1691481560.3936956-CDS-H-paniculata_contig8254:4485..46531691481560.3936956-CDS-H-paniculata_contig8254:4485..4653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 4486..4653 +
1622931035.96626-CDS-H-paniculata_contig8254:4951..51251622931035.96626-CDS-H-paniculata_contig8254:4951..5125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 4952..5125 +
1691481560.4092126-CDS-H-paniculata_contig8254:4951..51251691481560.4092126-CDS-H-paniculata_contig8254:4951..5125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 4952..5125 +
1622931035.987512-CDS-H-paniculata_contig8254:5522..57051622931035.987512-CDS-H-paniculata_contig8254:5522..5705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 5523..5705 +
1691481560.4253612-CDS-H-paniculata_contig8254:5522..57051691481560.4253612-CDS-H-paniculata_contig8254:5522..5705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 5523..5705 +
1622931036.0086799-CDS-H-paniculata_contig8254:6219..63121622931036.0086799-CDS-H-paniculata_contig8254:6219..6312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 6220..6312 +
1691481560.440036-CDS-H-paniculata_contig8254:6219..63121691481560.440036-CDS-H-paniculata_contig8254:6219..6312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8254 6220..6312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8254.16272.1

>prot_H-paniculata_contig8254.16272.1 ID=prot_H-paniculata_contig8254.16272.1|Name=mRNA_H-paniculata_contig8254.16272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MVFNGSTPKTPLIFVLSAGVDPTAQVQSLSVAQGVKMANVALGQGQAPAA
IRMIQDGSREGNWVFLANCHLMLSWMPVLEKIVEDMCVDDPHPDFRLWLS
SAPNPKFPISILRRGLKMTTEPPAGLRANMATLYNLVSPEQFSRCGQTFR
YRKLLFALSWFHAILLERRKFKSLGFNVPYEFNESDFSICHDLVIVFLDE
YPEKPPFDAMRYLIAEANYGGRVTDEWDRR*
back to top

mRNA from alignment at H-paniculata_contig8254:3741..6312+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8254.16272.1 ID=mRNA_H-paniculata_contig8254.16272.1|Name=mRNA_H-paniculata_contig8254.16272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2572bp|location=Sequence derived from alignment at H-paniculata_contig8254:3741..6312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTCAACGGTTCGACCCCCAAGACACCGCTGATATTTGTCCTATC
CGCAGGGGTGGATCCTACTGCACAGGTGGGAATCCGTGGACAAGATGGAA
GCGGAACGAGCACATATCCCATGTACTAGTAGAGATACACACGTGGGCAG
AGGGGTACCTTGCTGTGAATATTGCAATTTCCACGATGTGGGGAGGTTGA
CAATGTTTACACAATGTATTAGGACGTTGTGATAAGGTTGACAATATACC
TAAAATGTCCTAATACGCTTTATACAAATTGTGAACTTCACCGTAACGTG
GAGATGTTGTAATACCTGCAACAAGGTACTCACAAATACCCTCTCGACAC
GTGAGTAATGCACTCAAGTCAGATGAACATCCTCGTAGGTGGATACTTGT
AGGTCATTAGCCCTTCTTTCTGGGACAATACGCCGCCTTCTTGCAAACGA
CGACATTTAATGCGTGAATAGCTTTGACGACAAGACGCCGTAGCGCTCAT
CACCGGAATCTAAGGATGTTCTTTCAGATGCTCGCTGAAACTAAAGTCTA
GGAGTTACGTCAGAGGAGTGATAGGCAATACGAGGACTCGAACAGTGTGT
ATGTTAAATGTAGTTCATTGCTCCATTGACAATGTGCTACTCCTGCTTTT
AGATTGCGCCTGAGCGGCTCAGAATAGCCACAAATTTAGCCATCTTTGTG
TCAGAGTGATATCTCATGATTCCCAACCGGAGTCACACGTACCAGGTTCA
ATCACTTTCAGTGGCGCAAGGGGTGAAGATGGCGAATGTGGCGTTGGGTC
AAGGGCAGGCCCCAGCGGCCATCCGAATGATCCAAGACGGCTCGAGAGAA
GGGAACTGGGTTTTCTTGGCCAACTGCCACCTCATGCTATCATGGATGCC
GGTTCTTGAAAAGGTTAGCATAGTGTTCGGTTGAGCTCTCCACTCAAAAC
TGTACAAGAACACCCTAATGGGTAACCGGGAGTTGTCGAATAGCGACAGG
GAGAAGGCGACGATTTTTTCATATACATGGGCAAGCTAGGAATTCTCCGC
ATTTCCGGCGATTTTGCAGGGGTGTGTCAAGAGTCAATCTATGTTTCCCT
CGTGGGAATATTCTACGTCTATCAAAACTAACAAGCCTACGTGAGGGTTG
GTTCGGAACGTTTGATATTTGGTCGAACTTGGCTCTCCTCTCGCTCGCCC
ACCCATCCCAGATTGTGGAGGATATGTGTGTCGATGATCCTCATCCCGAC
TTCCGGCTCTGGTTGTCTTCGGCCCCAAACCCCAAGTTCCCGATCTCGAT
TTTGAGACGTGGCCTCAAGATGACAACAGAACCACCCGCGGGCCTGCGGG
CAAACATGGCCACCTTATACAACCTTGTCAGCCCGGTGGGTAACTTCTGG
GATTTGGGATTATTTGGTTCATTGATATAGTCGCACGGTTGTTCGTATTT
CGACAAAGGCGTGTGCGGCTCTGATTTTCGCACGAGACATTTCTTCTCTC
GGTCACCGTAGATGTAGCGTGTGTTTGTTCACACTTTGAGAGTATTTTTG
AACCCATGTTCGTCCTCGCTGTCGTATATAACCACATCAGGGCAGGAGTA
TGGCACATGTTAATTTTGACCGTAAAACTGATTGTTCGTAATCGCATATG
CTAGTCGTGGAGGTCCATCAATTAGATTTCTTGATGCGGCCCTATACAGT
ATCCCGATATGTTAAACACTGTTATCAAAGTTTGTGTTTTCTCTAACAAT
ACTGTGCCACTCCCCCAAAACCTGCCGAGTAGGAACAATTCAGTCGATGC
GGACAGACATTCCGCTACCGCAAGCTACTGTTTGCGCTGTCATGGTTCCA
CGCCATTCTCTTGGAAAGACGGAAATTCAAGAGCCTTGGATTCAACGTTC
CATACGAGTTCAACGAGTCAGACTTCAGCATCTGCCATGATCTCGTCATT
GTCTTCCTTGACGAGGTATTTCTGAAGAGCGTCGCAGCCGTGACCCATAC
AAAAGACGCATCCAAATGCCCATATACCGGCGATGGTGGAGCGATTGTCT
TTGACATACCCCTTTGCTACGTTGCTTTTGTTTGTATGTGGATAGGCCAC
GGCTGGACCTGGAAAAATAGTTAGAATACCTGCTGCGTAACGACTATCCC
CTAATGGCATTAACGCAAGATGAAATATGTAAATACCAATTTTCGTAACG
CTGAAAGTATCGTCTCAGCACGCCCTGTTCCCGGTATAGAGCATTTGTAC
ACGGTTACCTGAGTACAGCGCAACCACGTTGGTATTGAGGAAACGTAATT
CGCTCGCCCAGCTAAGAATAGATATCTGTTGCGTATGGTCTGGAAAGGCG
GATTGCGCCTGTGCAAAATGTTTTTCCGTGTGCCTTGAGAGAAATATCCA
AACTTGTCATGCCATTGTGAGAATACCAACCCTAGTCTCCTTCCATCTGC
TGGGTCTCTCATACTGCCTCTAATCACAGTACCCGGAGAAGCCGCCGTTT
GACGCCATGCGGTATCTCATTGCAGAGGCTAATTACGGAGGTCGGGTCAC
AGACGAATGGGACAGGCGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8254:3741..6312+

>mRNA_H-paniculata_contig8254.16272.1 ID=mRNA_H-paniculata_contig8254.16272.1|Name=mRNA_H-paniculata_contig8254.16272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig8254:3741..6312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTCAACGGTTCGACCCCCAAGACACCGCTGATATTTGTCCTATC
CGCAGGGGTGGATCCTACTGCACAGATGGTGTTCAACGGTTCGACCCCCA
AGACACCGCTGATATTTGTCCTATCCGCAGGGGTGGATCCTACTGCACAG
GTTCAATCACTTTCAGTGGCGCAAGGGGTGAAGATGGCGAATGTGGCGTT
GGGTCAAGGGCAGGCCCCAGCGGCCATCCGAATGATCCAAGACGGCTCGA
GAGAAGGGAACTGGGTTTTCTTGGCCAACTGCCACCTCATGCTATCATGG
ATGCCGGTTCTTGAAAAGGTTCAATCACTTTCAGTGGCGCAAGGGGTGAA
GATGGCGAATGTGGCGTTGGGTCAAGGGCAGGCCCCAGCGGCCATCCGAA
TGATCCAAGACGGCTCGAGAGAAGGGAACTGGGTTTTCTTGGCCAACTGC
CACCTCATGCTATCATGGATGCCGGTTCTTGAAAAGATTGTGGAGGATAT
GTGTGTCGATGATCCTCATCCCGACTTCCGGCTCTGGTTGTCTTCGGCCC
CAAACCCCAAGTTCCCGATCTCGATTTTGAGACGTGGCCTCAAGATGACA
ACAGAACCACCCGCGGGCCTGCGGGCAAACATGGCCACCTTATACAACCT
TGTCAGCCCGATTGTGGAGGATATGTGTGTCGATGATCCTCATCCCGACT
TCCGGCTCTGGTTGTCTTCGGCCCCAAACCCCAAGTTCCCGATCTCGATT
TTGAGACGTGGCCTCAAGATGACAACAGAACCACCCGCGGGCCTGCGGGC
AAACATGGCCACCTTATACAACCTTGTCAGCCCGGAACAATTCAGTCGAT
GCGGACAGACATTCCGCTACCGCAAGCTACTGTTTGCGCTGTCATGGTTC
CACGCCATTCTCTTGGAAAGACGGAAATTCAAGAGCCTTGGATTCAACGT
TCCATACGAGTTCAACGAGTCAGACTTCAGCATCTGCCATGATCTCGTCA
TTGTCTTCCTTGACGAGGAACAATTCAGTCGATGCGGACAGACATTCCGC
TACCGCAAGCTACTGTTTGCGCTGTCATGGTTCCACGCCATTCTCTTGGA
AAGACGGAAATTCAAGAGCCTTGGATTCAACGTTCCATACGAGTTCAACG
AGTCAGACTTCAGCATCTGCCATGATCTCGTCATTGTCTTCCTTGACGAG
TACCCGGAGAAGCCGCCGTTTGACGCCATGCGGTATCTCATTGCAGAGGC
TAATTACGGAGGTCGGGTCACAGACGAATGGGACAGGCGGTAATACCCGG
AGAAGCCGCCGTTTGACGCCATGCGGTATCTCATTGCAGAGGCTAATTAC
GGAGGTCGGGTCACAGACGAATGGGACAGGCGGTAA
back to top