prot_H-paniculata_contig8229.16249.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8229.16249.1
Unique Nameprot_H-paniculata_contig8229.16249.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length485
Homology
BLAST of mRNA_H-paniculata_contig8229.16249.1 vs. uniprot
Match: D7G5G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G6_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 3.810e-75
Identity = 197/556 (35.43%), Postives = 264/556 (47.48%), Query Frame = 0
Query:    1 ETTLDRWQWVQDGSSDGYYYNAATGEARWDDPREFAAETSQALVEQGYYDIQPHGEFMNGQQAEKSDLAGYYGDTSYMFTAEDGTLWRYDETVGDYVQHTDEPTGEVFNLDPAVASPWQRVESAQGPYYYNMLTQESSWYPPTDLGNTLSAESLHRENEDYEIGTPTTTSEHSTL----------DTDGFAGGHYYPHGTPATDETLQDVQYTQT-SVGRSLENGRN----IGGEVEPGVSTERSV-PDHPSAGGAGSGAG-----GCGWGYDSVLDCSSTDGLNTWSLEKLRELSKASPGKWFVSDFLLNRAIEDYDNLLELDEQQIAALKSKGTSRIIRSLIGPEDGEDNDEEEIPLSDGTDESVESENWSDK---------------------------------------SIPGDLAEALTVTEREERAATA--------RMRSSQESSVLMTGRATR--RKRSLLGLKIASIC-KAEGLGPWKSGFAVDGSIYFVHEDTGESTWSYPVRAWEVKAHQLGFLTPRNASGLGRGVCRLRETDDMRRKRIAYRY 485
            E T D WQWVQ+ S++GY+YN+ TGEARWDDP  F    S  LVE+GY D         G+      L  YYG   Y FTAEDGT+W YDE +GDYVQH D+                                QESSW PP +      AE  +     YE G P      + L          D     GG    H  P  +  L+ V      S   +   GR       G    G+ +ERS  P      G  + AG                       + WSL KLR +SK  PGKW VSDFL++RA EDYD +L L+  +I A K+KGTS+IIRSL+GPEDGED+D++++ LS  + E+ +     D+                                       S PGD  + +     +++AA +        + R    +   + G+  R  R+ SLLGL  A +  + +GLG WK GFA DGS+YF++++TGE  W++PVRAWEV+  QL  LTPR    +GRGVCRLRET +M++KR+A+R+
Sbjct:   90 EATPDEWQWVQNSSTEGYFYNSVTGEARWDDPAAFEEANSHELVERGYNDALATEGVPIGET-----LTEYYGQGRYTFTAEDGTVWSYDEALGDYVQHHDD--------------------------------QESSWEPPPEWQENPVAEDYYSST--YENGVPDNDGGVAELQQPGRPAITGDESNEEGGTL--HYAPPQETALEPVPTGGAGSASIAQPEGRKGYDENDGAASTGIRSERSSQPQENDTHGDMASAGPRSXXXXXXXXXXXXXXXXXXEFSQWSLAKLRGVSKMLPGKWPVSDFLVDRATEDYDMMLTLNASEIEAFKNKGTSQIIRSLVGPEDGEDDDQDDLSLSSDSCETADDPYQEDQLSASVTAGHVEYPTAQGFLGKSSGGITTAGTTSVTSFPGSSPGDAGDGVVANGGKKKAAASVTGSESVGKNREISPTRRPVEGKGLRPGRRGSLLGLDRAKVDNEGKGLGGWKPGFAEDGSLYFINQETGEVRWTFPVRAWEVRVRQLALLTPRAPLEVGRGVCRLRETSEMKKKRLAHRW 604          
BLAST of mRNA_H-paniculata_contig8229.16249.1 vs. uniprot
Match: A0A6H5KDY1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY1_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 9.410e-53
Identity = 139/355 (39.15%), Postives = 177/355 (49.86%), Query Frame = 0
Query:    1 ETTLDRWQWVQDGSSDGYYYNAATGEARWDDPREFAAETSQALVEQGYYDIQPHGEFMNGQQAEKSDLAGYYGDTSYMFTAEDGTLWRYDETVGDYVQHTDEPTGEVFNLDPAVASPWQRVESAQGPYYYNMLTQESSWYPPTDLGNTLSAESLHRENEDYEIGTPTTTSEHSTL----------DTDGFAGG--HYYPHGTPATDETLQDVQYTQTSV---GRSLENGRNIGGEVEPGVSTE-RSVPDHPSAGGAGSGAGGCGWGYDSVLDCSSTDGLNTWSLEKLRELSKASPGKWFVSDFLLNRAIEDYDNLLELDEQQIAALKSKGTSRIIRSLIGPEDGEDNDEEEIPLS 339
            E   D WQWVQ+ S++GY+YN  TGEARWDDP  F    S ALVE+GY D            + +  L  Y G  SY FTA+DGT+W YDE +GDYVQH D+                                QESSW PP +      AE  H     Y+ G P        L          D     GG  HY P    A +        + +     GR   +G +  G    G+ +E  S P      G  + AG    G ++ LD +S D  + WSLEKLR +SK  PGKW VSDFL++RA EDYD +L L+  +I A+K+KGTS+IIRSL+GPEDGED+DE+E+ LS
Sbjct:   28 EVAPDEWQWVQNSSTEGYFYNPVTGEARWDDPAAFEEANSHALVERGYNDA-----LATEGVSIRETLTEYDGRGSYTFTADDGTVWSYDEALGDYVQHHDD--------------------------------QESSWEPPPEWQENPVAEDYHSST--YQNGVPNNDGGVEELQQPARSAITGDESNEEGGTLHYAPPQETALEPVPTGAAGSASIAQPEGRKGYDGND--GAASTGIRSEPSSQPQENDTHGDMASAGPRSSGDNNSLDQTSADVFSQWSLEKLRGVSKMLPGKWPVSDFLVDRATEDYDMMLSLNASEIEAIKNKGTSQIIRSLVGPEDGEDDDEDELSLS 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8229.16249.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5G6_ECTSI3.810e-7535.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDY1_9PHAE9.410e-5339.15WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 293..313
NoneNo IPR availableGENE3D2.20.70.10coord: 103..161
e-value: 1.6E-6
score: 29.5
coord: 1..48
e-value: 3.6E-6
score: 28.4
NoneNo IPR availablePANTHERPTHR11864:SF0PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)coord: 6..198
IPR001202WW domainSMARTSM00456ww_5coord: 411..443
e-value: 0.28
score: 20.3
coord: 113..144
e-value: 1.3E-4
score: 31.3
coord: 2..34
e-value: 0.57
score: 18.6
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 416..441
IPR001202WW domainPROSITEPS01159WW_DOMAIN_1coord: 118..142
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 112..144
score: 12.157
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 415..443
score: 9.97
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 7..34
score: 10.541
IPR039726Pre-mRNA-processing factor Prp40PANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 6..198
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 112..144
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 5..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8229contigH-paniculata_contig8229:6164..10483 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8229.16249.1mRNA_H-paniculata_contig8229.16249.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8229 6164..10483 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8229.16249.1 ID=prot_H-paniculata_contig8229.16249.1|Name=mRNA_H-paniculata_contig8229.16249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=485bp
ETTLDRWQWVQDGSSDGYYYNAATGEARWDDPREFAAETSQALVEQGYYD
IQPHGEFMNGQQAEKSDLAGYYGDTSYMFTAEDGTLWRYDETVGDYVQHT
DEPTGEVFNLDPAVASPWQRVESAQGPYYYNMLTQESSWYPPTDLGNTLS
AESLHRENEDYEIGTPTTTSEHSTLDTDGFAGGHYYPHGTPATDETLQDV
QYTQTSVGRSLENGRNIGGEVEPGVSTERSVPDHPSAGGAGSGAGGCGWG
YDSVLDCSSTDGLNTWSLEKLRELSKASPGKWFVSDFLLNRAIEDYDNLL
ELDEQQIAALKSKGTSRIIRSLIGPEDGEDNDEEEIPLSDGTDESVESEN
WSDKSIPGDLAEALTVTEREERAATARMRSSQESSVLMTGRATRRKRSLL
GLKIASICKAEGLGPWKSGFAVDGSIYFVHEDTGESTWSYPVRAWEVKAH
QLGFLTPRNASGLGRGVCRLRETDDMRRKRIAYRY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR039726Prp40-like
IPR036020WW_dom_sf