mRNA_H-paniculata_contig8229.16249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8229.16249.1 vs. uniprot
Match: D7G5G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G6_ECTSI) HSP 1 Score: 267 bits (683), Expect = 3.810e-75 Identity = 197/556 (35.43%), Postives = 264/556 (47.48%), Query Frame = 1
Query: 1 ETTLDRWQWVQDGSSDGYYYNAATGEARWDDPREFAAETSQALVEQGYYDIQPHGEFMNGQQAEKSDLAGYYGDTSYMFTAEDGTLWRYDETVGDYVQHTDEPTGEVFNLDPAVASPWQRVESAQGPYYYNMLTQESSWYPPTDLGNTLSAESLHRENEDYEIGTPTTTSEHSTL----------DTDGFAGGHYYPHGTPATDETLQDVQYTQT-SVGRSLENGRN----IGGEVEPGVSTERSV-PDHPSAGGAGSGAG-----GCGWGYDSVLDCSSTDGLNTWSLEKLRELSKASPGKWFVSDFLLNRAIEDYDNLLELDEQQIAALKSKGTSRIIRSLIGPEDGEDNDEEEIPLSDGTDESVESENWSDK---------------------------------------SIPGDLAEALTVTEREERAATA--------RMRSSQESSVLMTGRATR--RKRSLLGLKIASIC-KAEGLGPWKSGFAVDGSIYFVHEDTGESTWSYPVRAWEVKAHQLGFLTPRNASGLGRGVCRLRETDDMRRKRIAYRY 1455
E T D WQWVQ+ S++GY+YN+ TGEARWDDP F S LVE+GY D G+ L YYG Y FTAEDGT+W YDE +GDYVQH D+ QESSW PP + AE + YE G P + L D GG H P + L+ V S + GR G G+ +ERS P G + AG + WSL KLR +SK PGKW VSDFL++RA EDYD +L L+ +I A K+KGTS+IIRSL+GPEDGED+D++++ LS + E+ + D+ S PGD + + +++AA + + R + + G+ R R+ SLLGL A + + +GLG WK GFA DGS+YF++++TGE W++PVRAWEV+ QL LTPR +GRGVCRLRET +M++KR+A+R+
Sbjct: 90 EATPDEWQWVQNSSTEGYFYNSVTGEARWDDPAAFEEANSHELVERGYNDALATEGVPIGET-----LTEYYGQGRYTFTAEDGTVWSYDEALGDYVQHHDD--------------------------------QESSWEPPPEWQENPVAEDYYSST--YENGVPDNDGGVAELQQPGRPAITGDESNEEGGTL--HYAPPQETALEPVPTGGAGSASIAQPEGRKGYDENDGAASTGIRSERSSQPQENDTHGDMASAGPRSXXXXXXXXXXXXXXXXXXEFSQWSLAKLRGVSKMLPGKWPVSDFLVDRATEDYDMMLTLNASEIEAFKNKGTSQIIRSLVGPEDGEDDDQDDLSLSSDSCETADDPYQEDQLSASVTAGHVEYPTAQGFLGKSSGGITTAGTTSVTSFPGSSPGDAGDGVVANGGKKKAAASVTGSESVGKNREISPTRRPVEGKGLRPGRRGSLLGLDRAKVDNEGKGLGGWKPGFAEDGSLYFINQETGEVRWTFPVRAWEVRVRQLALLTPRAPLEVGRGVCRLRETSEMKKKRLAHRW 604
BLAST of mRNA_H-paniculata_contig8229.16249.1 vs. uniprot
Match: A0A6H5KDY1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY1_9PHAE) HSP 1 Score: 202 bits (514), Expect = 9.410e-53 Identity = 139/355 (39.15%), Postives = 177/355 (49.86%), Query Frame = 1
Query: 1 ETTLDRWQWVQDGSSDGYYYNAATGEARWDDPREFAAETSQALVEQGYYDIQPHGEFMNGQQAEKSDLAGYYGDTSYMFTAEDGTLWRYDETVGDYVQHTDEPTGEVFNLDPAVASPWQRVESAQGPYYYNMLTQESSWYPPTDLGNTLSAESLHRENEDYEIGTPTTTSEHSTL----------DTDGFAGG--HYYPHGTPATDETLQDVQYTQTSV---GRSLENGRNIGGEVEPGVSTE-RSVPDHPSAGGAGSGAGGCGWGYDSVLDCSSTDGLNTWSLEKLRELSKASPGKWFVSDFLLNRAIEDYDNLLELDEQQIAALKSKGTSRIIRSLIGPEDGEDNDEEEIPLS 1017
E D WQWVQ+ S++GY+YN TGEARWDDP F S ALVE+GY D + + L Y G SY FTA+DGT+W YDE +GDYVQH D+ QESSW PP + AE H Y+ G P L D GG HY P A + + + GR +G + G G+ +E S P G + AG G ++ LD +S D + WSLEKLR +SK PGKW VSDFL++RA EDYD +L L+ +I A+K+KGTS+IIRSL+GPEDGED+DE+E+ LS
Sbjct: 28 EVAPDEWQWVQNSSTEGYFYNPVTGEARWDDPAAFEEANSHALVERGYNDA-----LATEGVSIRETLTEYDGRGSYTFTADDGTVWSYDEALGDYVQHHDD--------------------------------QESSWEPPPEWQENPVAEDYHSST--YQNGVPNNDGGVEELQQPARSAITGDESNEEGGTLHYAPPQETALEPVPTGAAGSASIAQPEGRKGYDGND--GAASTGIRSEPSSQPQENDTHGDMASAGPRSSGDNNSLDQTSADVFSQWSLEKLRGVSKMLPGKWPVSDFLVDRATEDYDMMLSLNASEIEAIKNKGTSQIIRSLVGPEDGEDDDEDELSLS 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8229.16249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8229.16249.1 >prot_H-paniculata_contig8229.16249.1 ID=prot_H-paniculata_contig8229.16249.1|Name=mRNA_H-paniculata_contig8229.16249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=485bp ETTLDRWQWVQDGSSDGYYYNAATGEARWDDPREFAAETSQALVEQGYYDback to top mRNA from alignment at H-paniculata_contig8229:6164..10483+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8229.16249.1 ID=mRNA_H-paniculata_contig8229.16249.1|Name=mRNA_H-paniculata_contig8229.16249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4320bp|location=Sequence derived from alignment at H-paniculata_contig8229:6164..10483+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8229:6164..10483+ >mRNA_H-paniculata_contig8229.16249.1 ID=mRNA_H-paniculata_contig8229.16249.1|Name=mRNA_H-paniculata_contig8229.16249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2910bp|location=Sequence derived from alignment at H-paniculata_contig8229:6164..10483+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |