mRNA_H-paniculata_contig8196.16216.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8196.16216.1
Unique NamemRNA_H-paniculata_contig8196.16216.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 9.760e-126
Identity = 193/218 (88.53%), Postives = 205/218 (94.04%), Query Frame = 2 
Query:   98 MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            MKSA MA+ACAA A  FVAPSAFNGAA+   AKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQNVRLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSE+TQESKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASY+FN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 376 bits (966), Expect = 2.670e-125
Identity = 194/218 (88.99%), Postives = 207/218 (94.95%), Query Frame = 2 
Query:   98 MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            MKSA+MAVACAA A GF  PSAFNGAALT +AK+ SAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FG+SWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASY+FN
Sbjct:    1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 355 bits (911), Expect = 4.240e-117
Identity = 184/212 (86.79%), Postives = 194/212 (91.51%), Query Frame = 2 
Query:  116 AVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            A+ACAA A G   PSAFNGAAL+  AKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDF +GGN F SSWD+MS +TQ SKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASY+FN
Sbjct:    1 AIACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 355 bits (910), Expect = 7.150e-117
Identity = 186/218 (85.32%), Postives = 199/218 (91.28%), Query Frame = 2 
Query:   98 MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            MKSA+MAVA AA   G   PSAFNGAALT +AKSSSAMKMSFESEIGAQAPLGFWDPLGLL DADQ+ FERLRYVE+K GRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMS +TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct:    1 MKSAIMAVASAA--PGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 2.730e-115
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 2 
Query:  158 SAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            SAFNGAA+  +AKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 3.230e-112
Identity = 175/197 (88.83%), Postives = 186/197 (94.42%), Query Frame = 2 
Query:  161 AFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            AFNGAA+   AKSSSAMKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 333 bits (855), Expect = 4.120e-109
Identity = 165/182 (90.66%), Postives = 175/182 (96.15%), Query Frame = 2 
Query:  206 AMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            AMKMSFE EIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMSE+TQESKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct:    1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 1.590e-108
Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 2 
Query:  209 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            MKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 314 bits (804), Expect = 5.400e-101
Identity = 164/213 (77.00%), Postives = 179/213 (84.04%), Query Frame = 2 
Query:  113 MAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            MA+ACAA A G      FNGAAL  +AKSSSAMKMSFESEIGAQ P+GFWDPLGL+ADADQERF+RLRYVEIKHGRIAMLAV GH+TQQN RLPGMLS   +L+FAD PNGVAA SKIPP+G  QI+  IG  EL V+K VEGSFPGD T GGN F S+WD MSE+TQ SKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:    1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
[Close]
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 2.120e-89
Identity = 146/206 (70.87%), Postives = 162/206 (78.64%), Query Frame = 2 
Query:  209 MKMSFESEIGAQAPLGFWDPLGLLADA-------------------------DQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 751
            MKMSFESE+GAQ PLGF+DPLGLL D                          DQERF+RLRYVE+KHGRI+MLAVAGHL  QN R PG LS  A L+FADMPNGVAA+SKIPP+GLAQIVAFIGFLEL VMKNVEGSFPGD T+GGN F + WDAMSE+T+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A Y+FN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE9.760e-12688.53LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
FCPB_MACPY2.670e-12588.99Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
FCPF_MACPY4.240e-11786.79Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
FCPC_MACPY7.150e-11785.32Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
A0A6H5JHT6_9PHAE2.730e-11588.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNK6_ECTSI3.230e-11288.83Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPD_MACPY4.120e-10990.66Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
A0A6H5JDS8_9PHAE1.590e-10890.06LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPE_MACPY5.400e-10177.00Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]
A0A6H5KBS3_9PHAE2.120e-8970.87LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8196contigH-paniculata_contig8196:5852..9902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue3.5e-104
Seed eggNOG ortholog2880.D7G1R7
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1774
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8196.16216.1prot_H-paniculata_contig8196.16216.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8196 5949..8882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.1224427-UTR-H-paniculata_contig8196:5851..59481622931027.1224427-UTR-H-paniculata_contig8196:5851..5948Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8196 5852..5948 +
1691481556.5972633-UTR-H-paniculata_contig8196:5851..59481691481556.5972633-UTR-H-paniculata_contig8196:5851..5948Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8196 5852..5948 +
1622931027.1811736-UTR-H-paniculata_contig8196:8882..99021622931027.1811736-UTR-H-paniculata_contig8196:8882..9902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8196 8883..9902 +
1691481556.6278393-UTR-H-paniculata_contig8196:8882..99021691481556.6278393-UTR-H-paniculata_contig8196:8882..9902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8196 8883..9902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.1437984-CDS-H-paniculata_contig8196:5948..60101622931027.1437984-CDS-H-paniculata_contig8196:5948..6010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8196 5949..6010 +
1691481556.608324-CDS-H-paniculata_contig8196:5948..60101691481556.608324-CDS-H-paniculata_contig8196:5948..6010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8196 5949..6010 +
1622931027.1605048-CDS-H-paniculata_contig8196:8287..88821622931027.1605048-CDS-H-paniculata_contig8196:8287..8882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8196 8288..8882 +
1691481556.6173418-CDS-H-paniculata_contig8196:8287..88821691481556.6173418-CDS-H-paniculata_contig8196:8287..8882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8196 8288..8882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8196.16216.1

>prot_H-paniculata_contig8196.16216.1 ID=prot_H-paniculata_contig8196.16216.1|Name=mRNA_H-paniculata_contig8196.16216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQA
PLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPG
MLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSF
PGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLVGASYSFN*
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mRNA from alignment at H-paniculata_contig8196:5852..9902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8196.16216.1 ID=mRNA_H-paniculata_contig8196.16216.1|Name=mRNA_H-paniculata_contig8196.16216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4051bp|location=Sequence derived from alignment at H-paniculata_contig8196:5852..9902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAATTGGAAGCTGCAACCACCAGCGGCCCACTCTCAGCCATTACCCCA
CATACACCTTAGCTTTCAATTTCAATCAACTCCAATCCGAAGAGAAGATG
AAGTCTGCTATGATGGCTGTCGCCTGCGCTGCTGGTGCCCAGGGCTTCGT
GGCTCCCAGGTGAGCGGCGTGATCCTGTGTGGCATTGGTACATGCTCGTC
ATGTGCATGCGTTTATGTCAGCAAGTTAGTTTCGTCGTCTCTTGAAGAGG
GCTGTTTTGTGCATGTGGACAAATCTAGTCACAGTGATGATCGAAGCCTC
ATGCAGTTAGCTTGGACAGGTGGACATGAGGACAGGTTCACCCCCAGAGA
GAAGGGAGGATCCTTCCCTACAAGGTAGTTCTTGTCATGGTGGTATGTAT
TGTCTTCCGTGTGCCTTTATGACGATTATATTTTCACACATCGTTTTGAG
GAAAGTTACTTTTTTGATCTTGAATTATTTCCCCAACCAACGTTGTCAAC
TCGATCATCCTCTTCCATCATCGTCCTAATACCCGAGTTCAGCTCTTGTA
GCTGTCTTCCCTCGGTACGAGTGTGCCTTATATCGCCCATATCGTTATGA
TATGGTGTCGCGTCGGGGTGGTGGATTAATTAAGCACAGATTCCTGGAGG
AAAAAGGCAGTAGTCTAGAGCATGATGTTTGGTTGAGCACAGTCATGGAG
ATCGTAGTGATCTGTATGAAAATAATCGATGTCTTCAGTAACGTGGCTGT
GCCCACACTCGTTGGTCGCTTCTCATAATCGACAAAACGAGTTGATGAAT
GAAAATAAGGAATGTATTTGTAATGTGCGTACGCTCATTAATTGCTTCCC
GTAGTCGAGAAAACGAGCCGATAAAATATCCACCAGCAGTCCTTACATAG
GTACGCCGTGTTGCCTCTCCATCGTTCTCATATCGAATCGACTGGAGTCA
GCAGGTGATCTGTTGCCAATTTTCCCACGATATGCTCCTAGGAAAAACAT
CCACACAGTTTCGAAACAAGAGGTACTCAGGTCCTGTCCTGAAAGTGCGG
CCCTCTGTAGTGAGTGCCTTCTCGTGGCAGCATGTTTTCCTGCAGGTGGT
GTTTATAAAGAGAATTTTACGAAGTAAGCATCAGTGAGCTCGAAGCCGTA
TACATAGTCATTGATGAGCATGGGGAGATCACGAACGGGTCCATGAGCCA
AGTTATACCCACAGTGTTTGATTCACGCAGGTATGCATGGCTATCTGGGT
TGTCTTGGAAATGTACAGTCCCCGATGTCGCGGATTGCAACACAACTGAG
GATCTCCTGGTCGGGATGTCCGGAGCAGGGATGTAACTCCTTTTCACTAG
CTTTTCAATAGCATGCGTTTTCCAATCTCACCTACATCACATGATATATT
ACTAAAAAGTGCGCAACCCACTCTGTGGTTAACGTGATGTGGCTCTGTTG
AACCAACGATATGGTCAAACTGTAGATAATGTAAAGAGCATGAACGTAAA
GGACGTGCGCTTAGTTCTGGAACACGGACCACACTAGGGTGGTGTCGATT
GCTTCCATTCTTGAGCCACTCTGAAAAGCTGAACTGCCAACAAGTATAAG
ACTTGAAATCGTGGATACAGTATATAAACGGTATTTTTCCAGCCTTTCAA
GATGCAGCGTTCGCATCTATATGAACAGGTATTGGTCCTGGTTCGACGCA
AGCCAAGTACGAAATACAAAGCTACTGTGGGGGTCATGTCTGAGCCGGGA
TGGCCTAGGAGATTATATGAGCTTTCAGTTTGATCTCTGTGAAAGCACGT
ACGTGAAATACGACTCCATTTCATATTCGATTGCGTTTTACTTTCAACTG
ATTCGATTTCAACCGTCGTTTACATTAATGCCATGGTGCCCCGTCTGGTC
TAACGAAACGTGAGGCAAGTACTTGACATTCTCATTATTTCCAAGGCTCA
AAAGGCCCCACATCGACCACATGGATATGTCTAATGTTTTCTGTGTATGA
TCCATGAATGCATGTCCTCGTCACATCTGCTGGTCTGTTGATGAAACTAC
ACTACAACGTCATTATGAAGTTTCGGGCGATTATCGTCAAGCGTGTGAAG
GAGAGGCAAAGCAATATGATCCGTGCCCTGTTGAATCAATATTCTTCAAT
TATAAGAACCAACGCAATCCAAATGACAGCCCGCCGAACGTTATAACGGT
TGAATCAAAGACATTCACTATGAGAAAAAGCTCTCGGAAATATCTGGGTT
AGTGAAAAAAAACTCTGACTAAGAGTATAGGCAAGACATTTGCAGTTTGA
CTCAAACGTCCTGGAAAAATCTTGATGGTCATGGGACTAACATGTGAAAT
GTAGATTAATTATTCCACCCACAAAATACCTTCCCCTCACCTTTGACCCC
GTGACACTTTCGACTACATGCTCATCTCTGCGACAGTGCTTTCAATGGTG
CGGCGCTGACCCAGGCCGCGAAGTCTTCGTCTGCTATGAAGATGTCCTTC
GAAAGTGAGATTGGTGCACAGGCCCCGCTTGGGTTCTGGGATCCGCTTGG
CTTGCTGGCAGACGCAGACCAGGAACGGTTCGAGCGCCTCCGGTACGTGG
AGATCAAGCATGGACGCATTGCGATGCTCGCCGTGGCCGGTCACCTAACC
CAGCAGAACGTGCGTTTGCCTGGCATGCTCTCCAACTCGGCGGACTTATC
TTTCGCAGACATGCCCAACGGTGTGGCTGCCCTGTCCAAGATTCCTCCCG
TCGGCCTCGCCCAGATCGTGGCGTTCATCGGTTTCCTCGAGCTGGCTGTG
ATGAAGAATGTTGAGGGCTCCTTCCCCGGAGACTTCACTCTGGGTGGTAA
CTGGTTCGGATCTTCGTGGGACGCGATGTCTGAGGATACCCAGGAATCCA
AGCGCGCGATCGAGCTCAACAACGGTCGGGCCGCGCAGATGGGTATTCTC
GCAATGATGGTCCACGAGGAGCTCTCCAACCAGCCCTACATCATCAATGA
CCTCGTCGGCGCGTCGTATTCTTTCAACTGAGTAATTACCGTCAACTCGG
GAGAGTAAACGGAATAGTTGAGTCGAGGGATTTGTTGTTCCGGGACCAAC
CCCCTGAACTTTCTCTTACGCACCTGTGCGACCTGGTAGTTTTCTATTTT
TGTAGAGCCATCTAGCTAGAAGATGTTCTTTTTTAGGGAGGGGCAGTGAA
GCGGGCACATGAGGAACACCAAATCTGATTTTATGGTGGACCCGCACCAG
CCAGTCTTTTTAGGTTGGAACTTCTTGATGCCTCGTGTACTTGGAGGTTT
TACACCTTGGCAGGGGGCAGAAATGGATTTTGATGCTTCCTTGCTTTTGT
GAGTTTAGTGTAACGTTTGTTTTTCTCCATTTTCTGGTGGGGAGGAATAC
TATCAGCTTCGAAACGTGTTTGCGTCAATGTCTTTACACCTCTGCACTGA
CCAACTGGGTCCTGGACGTGCTGCTTGTTTGTGGTCCAGTGCGGTCATTT
CCCGCGTTCTCGTCAGCACGTGAAGAATGTGATGAACCACCGTTGGCCCC
GTTTTTCGTTGAAGCCATGAAGTCAAAATTACACTACTCAAAACATTACC
TATTGATACTGTCAACTGTATACGCAGGAAAAATGGTACTAAAAGGGCAA
CGTGGAATCTCGCAATTTTACACAACCCTTTAAAGATTGTTGCGAGCATT
ATATGTTGGTAAAATGAAATATTATTTCAAAAATATGTACGTTCAGGGAA
TATTTTCGACTTGGTCCGAGAAATTAACTGTAGAACAGTACAAAGGTGGA
AAAGCTCATCTTGGGTGTTGTTTGTAGACCCAACAAGTGTCGATAAATTA
TTTTTAATTTGCTCCCATCGTAACGTTGGTAATGTATACATAGTAACATT
TTAGAGCACAAATCCGGAAATAAATATATAAACCCAATATTTTTTGCGAA
AATCATACTTGTATCCGAAGGATTATCGTTTCGTGGACAATGTTCCATTA
CTGTTTCGATACATAACCCAAACTCAAAATATACCTGGGTCAAACTAGAA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig8196:5852..9902+

>mRNA_H-paniculata_contig8196.16216.1 ID=mRNA_H-paniculata_contig8196.16216.1|Name=mRNA_H-paniculata_contig8196.16216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig8196:5852..9902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCTGCTATGATGGCTGTCGCCTGCGCTGCTGGTGCCCAGGGCTT
CGTGGCTCCCAGATGAAGTCTGCTATGATGGCTGTCGCCTGCGCTGCTGG
TGCCCAGGGCTTCGTGGCTCCCAGTGCTTTCAATGGTGCGGCGCTGACCC
AGGCCGCGAAGTCTTCGTCTGCTATGAAGATGTCCTTCGAAAGTGAGATT
GGTGCACAGGCCCCGCTTGGGTTCTGGGATCCGCTTGGCTTGCTGGCAGA
CGCAGACCAGGAACGGTTCGAGCGCCTCCGGTACGTGGAGATCAAGCATG
GACGCATTGCGATGCTCGCCGTGGCCGGTCACCTAACCCAGCAGAACGTG
CGTTTGCCTGGCATGCTCTCCAACTCGGCGGACTTATCTTTCGCAGACAT
GCCCAACGGTGTGGCTGCCCTGTCCAAGATTCCTCCCGTCGGCCTCGCCC
AGATCGTGGCGTTCATCGGTTTCCTCGAGCTGGCTGTGATGAAGAATGTT
GAGGGCTCCTTCCCCGGAGACTTCACTCTGGGTGGTAACTGGTTCGGATC
TTCGTGGGACGCGATGTCTGAGGATACCCAGGAATCCAAGCGCGCGATCG
AGCTCAACAACGGTCGGGCCGCGCAGATGGGTATTCTCGCAATGATGGTC
CACGAGGAGCTCTCCAACCAGCCCTACATCATCAATGACCTCGTCGGCGC
GTCGTATTCTTTCAACTGATGCTTTCAATGGTGCGGCGCTGACCCAGGCC
GCGAAGTCTTCGTCTGCTATGAAGATGTCCTTCGAAAGTGAGATTGGTGC
ACAGGCCCCGCTTGGGTTCTGGGATCCGCTTGGCTTGCTGGCAGACGCAG
ACCAGGAACGGTTCGAGCGCCTCCGGTACGTGGAGATCAAGCATGGACGC
ATTGCGATGCTCGCCGTGGCCGGTCACCTAACCCAGCAGAACGTGCGTTT
GCCTGGCATGCTCTCCAACTCGGCGGACTTATCTTTCGCAGACATGCCCA
ACGGTGTGGCTGCCCTGTCCAAGATTCCTCCCGTCGGCCTCGCCCAGATC
GTGGCGTTCATCGGTTTCCTCGAGCTGGCTGTGATGAAGAATGTTGAGGG
CTCCTTCCCCGGAGACTTCACTCTGGGTGGTAACTGGTTCGGATCTTCGT
GGGACGCGATGTCTGAGGATACCCAGGAATCCAAGCGCGCGATCGAGCTC
AACAACGGTCGGGCCGCGCAGATGGGTATTCTCGCAATGATGGTCCACGA
GGAGCTCTCCAACCAGCCCTACATCATCAATGACCTCGTCGGCGCGTCGT
ATTCTTTCAACTGA
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