prot_H-paniculata_contig8196.16216.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8196.16216.1
Unique Name	prot_H-paniculata_contig8196.16216.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	219

Homology

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BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 3.490e-131
Identity = 193/218 (88.53%), Postives = 205/218 (94.04%), Query Frame = 0

Query:    1 MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKSA MA+ACAA A  FVAPSAFNGAA+   AKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQNVRLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSE+TQESKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASY+FN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 376 bits (965), Expect = 6.790e-131
Identity = 194/218 (88.99%), Postives = 207/218 (94.95%), Query Frame = 0

Query:    1 MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKSA+MAVACAA A GF  PSAFNGAALT +AK+ SAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FG+SWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASY+FN
Sbjct:    1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 355 bits (910), Expect = 1.320e-122
Identity = 184/212 (86.79%), Postives = 194/212 (91.51%), Query Frame = 0

Query:    7 AVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            A+ACAA A G   PSAFNGAAL+  AKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDF +GGN F SSWD+MS +TQ SKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASY+FN
Sbjct:    1 AIACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 355 bits (910), Expect = 1.570e-122
Identity = 186/218 (85.32%), Postives = 199/218 (91.28%), Query Frame = 0

Query:    1 MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKSA+MAVA A  A G   PSAFNGAALT +AKSSSAMKMSFESEIGAQAPLGFWDPLGLL DADQ+ FERLRYVE+K GRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMS +TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct:    1 MKSAIMAVASA--APGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

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BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 4.410e-121
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 0

Query:   21 SAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            SAFNGAA+  +AKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPP GLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 5.310e-118
Identity = 175/197 (88.83%), Postives = 186/197 (94.42%), Query Frame = 0

Query:   22 AFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            AFNGAA+   AKSSSAMKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 334 bits (856), Expect = 8.020e-115
Identity = 165/182 (90.66%), Postives = 175/182 (96.15%), Query Frame = 0

Query:   37 AMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            AMKMSFE EIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMSE+TQESKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct:    1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 3.150e-114
Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 0

Query:   38 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLSNSA+LSFADMPNGVAALSKIPP GLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSE+TQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

[Close]

BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 313 bits (803), Expect = 2.700e-106
Identity = 164/213 (77.00%), Postives = 179/213 (84.04%), Query Frame = 0

Query:    6 MAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MA+ACAA A G      FNGAAL  +AKSSSAMKMSFESEIGAQ P+GFWDPLGL+ADADQERF+RLRYVEIKHGRIAMLAV GH+TQQN RLPGMLS   +L+FAD PNGVAA SKIPP+G  QI+  IG  EL V+K VEGSFPGD T GGN F S+WD MSE+TQ SKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:    1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

[Close]

BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 8.090e-95
Identity = 146/206 (70.87%), Postives = 162/206 (78.64%), Query Frame = 0

Query:   38 MKMSFESEIGAQAPLGFWDPLGLLADA-------------------------DQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 218
            MKMSFESE+GAQ PLGF+DPLGLL D                          DQERF+RLRYVE+KHGRI+MLAVAGHL  QN R PG LS  A L+FADMPNGVAA+SKIPP+GLAQIVAFIGFLEL VMKNVEGSFPGD T+GGN F + WDAMSE+T+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A Y+FN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8196.16216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	3.490e-131	88.53	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPB_MACPY	6.790e-131	88.99	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
FCPF_MACPY	1.320e-122	86.79	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPC_MACPY	1.570e-122	85.32	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
A0A6H5JHT6_9PHAE	4.410e-121	88.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNK6_ECTSI	5.310e-118	88.83	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPD_MACPY	8.020e-115	90.66	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
A0A6H5JDS8_9PHAE	3.150e-114	90.06	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPE_MACPY	2.700e-106	77.00	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
A0A6H5KBS3_9PHAE	8.090e-95	70.87	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 46..198 e-value: 8.0E-33 score: 114.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 42..214 e-value: 7.3E-26 score: 93.1
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 17..202
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..31
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..218
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..31
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 33..208
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 17..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8196	contig	H-paniculata_contig8196:5949..8882 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8196.16216.1	mRNA_H-paniculata_contig8196.16216.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8196 5852..9902 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8196.16216.1 ID=prot_H-paniculata_contig8196.16216.1|Name=mRNA_H-paniculata_contig8196.16216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MKSAMMAVACAAGAQGFVAPSAFNGAALTQAAKSSSAMKMSFESEIGAQA
PLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAVAGHLTQQNVRLPG
MLSNSADLSFADMPNGVAALSKIPPVGLAQIVAFIGFLELAVMKNVEGSF
PGDFTLGGNWFGSSWDAMSEDTQESKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLVGASYSFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln