prot_H-paniculata_contig8185.16204.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8185.16204.1
Unique Nameprot_H-paniculata_contig8185.16204.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length139
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8185.16204.1 vs. uniprot
Match: D8LNA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.350e-27
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 0 
Query:    1 MRARPVGRWSWMALSSLAVALLGGGRLSVALGCALAISTLWMHGWWLFLQPEIAPLMFFVCGVTMDVALGFLLASLVQVHCKSSPGSGVPPTAANPLSQSCIPPGGGXXXXXSGVAGGRVWAAVTPPGLV 130
            +R+RPVG W +  LS L +ALLGGG+ S+  G +L +STLW HGWWL++QPE AP++F + G T DVALGFLL SL+Q+H   SP                           +  +   +W AVTPPGL 
Sbjct:  151 VRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIH--RSPSXXXXXXXXXXXXXXXXVSAAAAHDHHASGSQADMWNAVTPPGLA 278
[Close]
BLAST of mRNA_H-paniculata_contig8185.16204.1 vs. uniprot
Match: A0A6H5LJL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 8.470e-17
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0 
Query:   15 SSLAVALLGGGRLSVALGCALAISTLWMHGWWLFLQPEIAPLMFFVCGVTMDVALGFLLASLVQ 78
            S L +ALLGGG+ S+  G +L ++TLW HGWWL++QPE AP+ F + G T DVALGFLL SL+Q
Sbjct: 1216 SVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSLLQ 1279
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8185.16204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNA8_ECTSI7.350e-2743.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LJL3_9PHAE8.470e-1759.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..77
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..138
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availableTMHMMTMhelixcoord: 53..75
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8185contigH-paniculata_contig8185:821..4179 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8185.16204.1mRNA_H-paniculata_contig8185.16204.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8185 788..5116 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8185.16204.1 ID=prot_H-paniculata_contig8185.16204.1|Name=mRNA_H-paniculata_contig8185.16204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MRARPVGRWSWMALSSLAVALLGGGRLSVALGCALAISTLWMHGWWLFLQ
PEIAPLMFFVCGVTMDVALGFLLASLVQVHCKSSPGSGVPPTAANPLSQS
CIPPGGGDGGGGSGVAGGRVWAAVTPPGLVSRGGGSRN*
back to top