mRNA_H-paniculata_contig8185.16204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8185.16204.1
Unique NamemRNA_H-paniculata_contig8185.16204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8185.16204.1 vs. uniprot
Match: D8LNA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.760e-29
Identity = 67/145 (46.21%), Postives = 86/145 (59.31%), Query Frame = 1 
Query:    1 GLLAGVTAGLGMRARPVGRWSWMALSSLAVALLGGGRLSVALGCALAISTLWMHGWWLFLQPEIAPLMFFVCGVTMDVALGFLLASLVQVHCKSSPGSGVPPTAANPLSQSCIPPGGXXXXXXSGVAGGRVWAAVTPPGLVSRGG 435
            GL AG+TAGLG+R+RPVG W +  LS L +ALLGGG+ S+  G +L +STLW HGWWL++QPE AP++F + G T DVALGFLL SL+Q+H   SP                           +  +   +W AVTPPGL    G
Sbjct:  140 GLAAGLTAGLGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIH--RSPSXXXXXXXXXXXXXXXXVSAAAAHDHHASGSQADMWNAVTPPGLAGLRG 282
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BLAST of mRNA_H-paniculata_contig8185.16204.1 vs. uniprot
Match: A0A6H5LJL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.420e-14
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   76 SSLAVALLGGGRLSVALGCALAISTLWMHGWWLFLQPEIAPLMFFVCGVTMDVALGFLLASLVQ 267
            S L +ALLGGG+ S+  G +L ++TLW HGWWL++QPE AP+ F + G T DVALGFLL SL+Q
Sbjct: 1216 SVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSLLQ 1279
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8185.16204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNA8_ECTSI2.760e-2946.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LJL3_9PHAE5.420e-1459.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8185contigH-paniculata_contig8185:788..5116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004540.1
Exons3
Model size1387
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8185.16204.1prot_H-paniculata_contig8185.16204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8185 821..4179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.3608644-UTR-H-paniculata_contig8185:787..8201622931025.3608644-UTR-H-paniculata_contig8185:787..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8185 788..820 +
1691481555.8862445-UTR-H-paniculata_contig8185:787..8201691481555.8862445-UTR-H-paniculata_contig8185:787..820Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8185 788..820 +
1622931025.4360943-UTR-H-paniculata_contig8185:4179..51161622931025.4360943-UTR-H-paniculata_contig8185:4179..5116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8185 4180..5116 +
1691481555.9243674-UTR-H-paniculata_contig8185:4179..51161691481555.9243674-UTR-H-paniculata_contig8185:4179..5116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8185 4180..5116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.3794463-CDS-H-paniculata_contig8185:820..8621622931025.3794463-CDS-H-paniculata_contig8185:820..862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8185 821..862 +
1691481555.8970869-CDS-H-paniculata_contig8185:820..8621691481555.8970869-CDS-H-paniculata_contig8185:820..862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8185 821..862 +
1622931025.3949285-CDS-H-paniculata_contig8185:1792..19841622931025.3949285-CDS-H-paniculata_contig8185:1792..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8185 1793..1984 +
1691481555.9051685-CDS-H-paniculata_contig8185:1792..19841691481555.9051685-CDS-H-paniculata_contig8185:1792..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8185 1793..1984 +
1622931025.4132712-CDS-H-paniculata_contig8185:3996..41791622931025.4132712-CDS-H-paniculata_contig8185:3996..4179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8185 3997..4179 +
1691481555.9139903-CDS-H-paniculata_contig8185:3996..41791691481555.9139903-CDS-H-paniculata_contig8185:3996..4179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8185 3997..4179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8185.16204.1

>prot_H-paniculata_contig8185.16204.1 ID=prot_H-paniculata_contig8185.16204.1|Name=mRNA_H-paniculata_contig8185.16204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MRARPVGRWSWMALSSLAVALLGGGRLSVALGCALAISTLWMHGWWLFLQ
PEIAPLMFFVCGVTMDVALGFLLASLVQVHCKSSPGSGVPPTAANPLSQS
CIPPGGGDGGGGSGVAGGRVWAAVTPPGLVSRGGGSRN*
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mRNA from alignment at H-paniculata_contig8185:788..5116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8185.16204.1 ID=mRNA_H-paniculata_contig8185.16204.1|Name=mRNA_H-paniculata_contig8185.16204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4329bp|location=Sequence derived from alignment at H-paniculata_contig8185:788..5116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTGCTAGCGGGGGTGACTGCGGGGCTGGGGATGCGAGCTCGGCCTGT
TGGGAGATGGAGCTGGATGGCGCTGGTGAGAGAGGAGGTCGTTGGCTGTC
GGGGAGGGGGGCGGCGGGGGGGATTTTTCCTTGTCAGTAAGATTCATGTG
CAGCGATGGGTATGTAGTGGTCGTCTCGCACAGAGTACCAGTTATTTTCT
GGTGATCGGTTTTACCGTATCGTATGTTATTACAGACTACGTATCGCAAA
TATTATCTTCAATCATTGACTGCATTGCACGGCCGTAGCCATGTATTTTA
CTTCTGCTAGTACTCCGAGTGTGTATATACCTATGGTGGCATTCGGTGAG
TGTAGCGAACGAGCCGTTCTTCGTGGATCATGAGATGGAAATGTGGGTAC
AGCGACACCGTTGCGAGTGGTGAATTTGGTGTGTACGAGATTCGAATTAC
TGTAGAACCACAGCTTTCATTTGTTGCAACACTAGTGCAAATAAGAATCA
GTATAGTGCGTGTTCGTTTGTGATGTGTTTCGTTGTCAAGATGAGAACAC
TAGTAGTACATGTTAAAGTGTGAGAAGTACCAACATCGCCAAATTGGAAA
GAAGTTTACTACAATTTACCATTCTCCCCCCTATTCTAATCGATATCCCC
ACCCCACGTTTTCTAATGCTGCATCGCCACACCTTCCCCCCCTCCGCGCT
CCGTTCTCTCGAAAACGCCTGTTCAACGGTCTAGCGAGCTATATATCATG
CAAAACACCAACATGTCTACCCCTATTTTGGTCAAAGGATTCGATACCAG
CGACATGTTCAGTCAAATTCACACAAAAGAGTATCTTGCCACGATGGGTT
GTTCCTGAATAGCTCCCATACAAAGCGGAACTGGTAATGATCCCCCAAAT
CCTTCGACCCCGCCACCCTCCCGCCGTTGCTCTTCCTTTTGCTCTTTGCC
TTTTTTGATACTGTGAACAAAATGTCGCAACCTTGCTGCCTTGCCCCGAT
GACAGTCGTCGCTGGCCGTCGCGCTGCTGGGGGGTGGGCGCCTGAGCGTA
GCTCTAGGTTGCGCTCTCGCGATCTCTACCCTGTGGATGCATGGCTGGTG
GTTGTTCCTGCAGCCAGAAATAGCCCCGCTGATGTTCTTTGTTTGCGGAG
TGACTATGGACGTAGCCTTGGGCTTTTTGCTGGCGTCACTCGTTCAGGTG
CAGTATCCGTTAGTCTATGGGTGGGGAAATAATTAATTAAATTATTAAAG
AAATAAAGGTCTCCGCATCTTGGAAAAAAAAAAACACATTTTTTTTTGCG
CAAAACAAATCGTGCTGCAAATAAAAGGATCCTTTCGCATATTCCGTGTT
TTGTATTTTGTGATCGTTTTTTTGTCGAAAAATAGATTTCTTGTTTGATA
GAAACGTTTTTATTGCAACTATAATCTCCTTATGGTGAGAGCATCACTTT
TGGAACATGGCACTCTTCGGTGTGGTGGAAGAAATATCTTGGAATATATA
TATGTATATATAAGCACTCTGGTTGTGATTATAGCTTCTTGTTTCCATCT
GTGCGAAGAGCCGGTTAGCTGACTTTCGTGAAGAAGCATTTTTGAAATCA
CAACAGAGGGTGAGCTACCTACGTCTCGGAGCAACCTTAGTGCACAAAAA
GGGAATGGTTGTCGTTTCACTACTAAAAAAGAATCCATGTGTTAGATGGA
CTACCCTTAATCCTTTGCGATCTGTCCGGGAGAGGGTGGTGGAGCGCAGG
GTTACGGGTTAGATTGCGTCATGGCGTGTGTTTTTTATCGCTCCGCCTTC
TTCTCGTCCTTGGCAGCGTCGAATGTGATAGCAAGTGGTAATATTTTTTT
CTCAATGCACAGTTTGACTACCGCATCTACACCCGACAGAATACATCGCT
TATGCAATGATGATGACGGAGGTTTTCGAATAGTTGGAACTTGTTTCCGA
AATTTTCGTGAACATGAACGTGAACATGAACATTATCTAGTCGCAGTTTT
GTTGATATGTTTAAAGGGTAGAAGCTACCGCTTTGACCGCTTGGAGTCCA
TTCGGGATATGACCACCGATTGCAGGAGACAGCACCCAGTTGCGTGATGG
CGGAGATATGGCAGTTTCATCCTTTTTCTCCTGTGTTTCTATTGTCATAA
TCCACCTATCACGGCGAGACCCTGCGCTCTTTCTCTGCACGTGCAACGGC
ACTGAGTACACGGACATGTAGTTTATGGTCGGCTACAGCGAGTGGCTTCG
CTGCTGGCGAGCTCTTTGGCTCTTGCGGGTGATGGTGCTGGTGCCTCAAG
CGTAAGTTTGGTTTAATGGGAAAGATCTCTCCTCAGCGCGTTTTACTTTT
TTTGCCTCAACCGCAGTAATACAGCACAGTCGCTTGTTCTCTTGCTATAG
CCCTCCCCAACCGTACCACTTGTCCGCAACAGTGGTCTATCTGATATTTT
AGTGTCCTATTCCATAACTCAAAACCAGTGTGCAGTTCGGTCTGTATGTA
GAAACTCCACAGGAGCAAAGCACTCATGTATGCACAGCTCGTTCAGCGTG
GTGTACTCCAAGCTCGCACAATAAGGGTTGTTAGGCCCCAGGCTATGAAT
GGCGAGGCGCTCCAAAATGGGAGTACTTTGATTTTTGTAGTGATTTGTAC
ATTGATTTTTTTTAAATTCTCGATTTGTTTGTTGTCGAGTAGGCCACGCT
CCTAGTTAAGCTGAAATGGTTGTTCCTTAATTTCGTCTTTTCGGGTTCCC
TCCCCCAAGCTTCAACTACTAGCGGCTGCCGATTCCATTTGCAGCTGCTC
TTTGACGTACATACGTCGCTTCACTTGCGGAGAATCGAAAATAAAAATGA
ATCGCTTTCACCGTGAAACGTCCGTTTGAGCCCCCCCTTTTTATCCCTCC
TCCTCTCCCTTGCCCCCGGCTTACACACGGAACGGTTGGCATGTTTCTGT
CCCCAGTCCAGGCTCGCGGTTCGTGGGTCAAAGAGTTCAGAGGAATTTTT
AGTTGTTCTGCTTTCACAGCACACATTACTTCGTGGAAGTACTACAGTAG
CATGCATAAGTAGAGTAAACAAGTCAATTTCATCCTTATTTTGCCATACT
TCATTACTGTTCAATATTATTAGTTATGAGTAAGTAGTACCATGTGGAAA
CCCGATGTCTTTTTTTACTTTCTAAGCGAATTTACGTCCCTGCCCATCAT
ACTGTCTAGGTACACTGCAAGTCGTCACCGGGATCAGGGGTACCTCCGAC
TGCGGCAAACCCTTTGTCTCAATCGTGTATTCCTCCGGGTGGTGGTGATG
GTGGTGGCGGCAGTGGCGTGGCTGGTGGGCGGGTGTGGGCAGCGGTTACT
CCACCCGGCCTCGTGTCACGAGGAGGCGGCTCCAGGAATTGATTTTTTTG
TTTGATTGTATAGTGACATTGGTGGGAGACCGAGGAATGTCTTATTGTTG
AAACACTAAATTGCTAGCTTGTAGTTTTCACCTTTTTGCTGCCCAGTTGT
TGAGTTTCAAGTTTCAGATATATATATCAAAAGTCACCAAGACAAGAAGA
AGAAGAACGACTTTATAAGACCGTATGTTCTCTTGTCGCAAGAAACCTGC
TCACCCATAACGCGTTTTTTCAAGAGTAAAAATTATTCGCCCGGAGGTAT
CTGTGTGAAAGGTCGAAGAGAGGGGGCATTATAGGTGAAAATTTGATGCT
GATATCTTTTCCAGCCAGTGAAAAAACATGTGACTGTTGACCATACTTCG
TTTGTTTTTTTTTGGGTTGGTATCTATATTTTCATTTCGAGCTGGTTAGG
TAGTCTTTGCACCGAGAGAAAAAGATACGGTGCTTCTTCGGTTATTGGAG
TCCCCCCCAAGTGTTTTCCGGCCCTCGTACGTACACACGGGGACGGTTTC
CAGCAAAAAACAAGCAGATATTTTAGAGCTCGTGAGGTTATTCGTCTGGG
TACCACCTCGCACAAAAGCCGTTAAATCTTCGAGAACGTAGTCAGCTGCC
ACGGAGGGTGCACTCATCCATGCAAAATAAATACTCCGGACTGAAGCCGA
AGAGAACCGTATTGTCTTTTTCTTATAAGAGAGTCGATACTTTGTTGGAG
GGCCGATGGTCGTAGCAGCGGATGAAGGCAACTTTTCAAGTTGCTGAAAA
CACAAGTCTTGAAGATTGGCGTATACATATCCTCTTGTTTCGAGGTTTGT
TCAATTTCATCGATAGCTAACCATGAAAGAGCAGTGCATTGATACCCCTA
GTTTATTTAGCGGCGGGGGCGACAGTTCAAACTTGGCCCATACCCTGGGG
GAGCCCAATCGAGTATAAACCGGTATATA
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Coding sequence (CDS) from alignment at H-paniculata_contig8185:788..5116+

>mRNA_H-paniculata_contig8185.16204.1 ID=mRNA_H-paniculata_contig8185.16204.1|Name=mRNA_H-paniculata_contig8185.16204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig8185:788..5116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGCTCGGCCTGTTGGGAGATGGAGCTGGATGGCGCTGATGCGAGC
TCGGCCTGTTGGGAGATGGAGCTGGATGGCGCTGTCGTCGCTGGCCGTCG
CGCTGCTGGGGGGTGGGCGCCTGAGCGTAGCTCTAGGTTGCGCTCTCGCG
ATCTCTACCCTGTGGATGCATGGCTGGTGGTTGTTCCTGCAGCCAGAAAT
AGCCCCGCTGATGTTCTTTGTTTGCGGAGTGACTATGGACGTAGCCTTGG
GCTTTTTGCTGGCGTCACTCGTTCAGTCGTCGCTGGCCGTCGCGCTGCTG
GGGGGTGGGCGCCTGAGCGTAGCTCTAGGTTGCGCTCTCGCGATCTCTAC
CCTGTGGATGCATGGCTGGTGGTTGTTCCTGCAGCCAGAAATAGCCCCGC
TGATGTTCTTTGTTTGCGGAGTGACTATGGACGTAGCCTTGGGCTTTTTG
CTGGCGTCACTCGTTCAGGTACACTGCAAGTCGTCACCGGGATCAGGGGT
ACCTCCGACTGCGGCAAACCCTTTGTCTCAATCGTGTATTCCTCCGGGTG
GTGGTGATGGTGGTGGCGGCAGTGGCGTGGCTGGTGGGCGGGTGTGGGCA
GCGGTTACTCCACCCGGCCTCGTGTCACGAGGAGGCGGCTCCAGGAATTG
AGTACACTGCAAGTCGTCACCGGGATCAGGGGTACCTCCGACTGCGGCAA
ACCCTTTGTCTCAATCGTGTATTCCTCCGGGTGGTGGTGATGGTGGTGGC
GGCAGTGGCGTGGCTGGTGGGCGGGTGTGGGCAGCGGTTACTCCACCCGG
CCTCGTGTCACGAGGAGGCGGCTCCAGGAATTGA
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