mRNA_H-paniculata_contig81642.16190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81642.16190.1
Unique NamemRNA_H-paniculata_contig81642.16190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig81642.16190.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.410e-6
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   37 FNTKDNPWGEPPAAVVGDRGNISAVRSYFVDLYRE--KRVVSQSLKVVLVGREDTGKT 204
            F   +NPW EPP AVV     ISAV+ YF DL+ E    V  + +KVVLVG+E  GKT
Sbjct:  243 FLVHENPWQEPPEAVVSK--GISAVQEYFTDLFAEGIAPVGRKMIKVVLVGQEGAGKT 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81642.16190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL98_ECTSI3.410e-651.72LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81642contigH-paniculata_contig81642:247..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size208
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.5760186-CDS-H-paniculata_contig81642:246..4501622931023.5760186-CDS-H-paniculata_contig81642:246..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81642 247..450 +
1691481555.3064818-CDS-H-paniculata_contig81642:246..4501691481555.3064818-CDS-H-paniculata_contig81642:246..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81642 247..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81642.16190.1prot_H-paniculata_contig81642.16190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81642 247..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81642.16190.1

>prot_H-paniculata_contig81642.16190.1 ID=prot_H-paniculata_contig81642.16190.1|Name=mRNA_H-paniculata_contig81642.16190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
DEFLVFLEGLDEFNTKDNPWGEPPAAVVGDRGNISAVRSYFVDLYREKRV
VSQSLKVVLVGREDTGKT
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mRNA from alignment at H-paniculata_contig81642:247..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81642.16190.1 ID=mRNA_H-paniculata_contig81642.16190.1|Name=mRNA_H-paniculata_contig81642.16190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=206bp|location=Sequence derived from alignment at H-paniculata_contig81642:247..452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGAATTCCTTGTGTTTCTGGAGGGACTTGATGAGTTCAACACTAAAGA
CAATCCATGGGGGGAGCCCCCAGCTGCTGTGGTTGGAGACCGGGGAAACA
TTTCCGCAGTGAGGTCTTATTTCGTGGATCTCTACCGAGAGAAGAGGGTA
GTTTCCCAGAGTCTCAAGGTTGTGCTCGTCGGAAGGGAAGACACAGGAAA
GACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig81642:247..452+

>mRNA_H-paniculata_contig81642.16190.1 ID=mRNA_H-paniculata_contig81642.16190.1|Name=mRNA_H-paniculata_contig81642.16190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig81642:247..452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGAATTCCTTGTGTTTCTGGAGGGACTTGATGAGTTCAACACTAAAGA
CAATCCATGGGGGGAGCCCCCAGCTGCTGTGGTTGGAGACCGGGGAAACA
TTTCCGCAGTGAGGTCTTATTTCGTGGATCTCTACCGAGAGAAGAGGGTA
GTTTCCCAGAGTCTCAAGGTTGTGCTCGTCGGAAGGGAAGACACAGGAAA
GACAGATGAATTCCTTGTGTTTCTGGAGGGACTTGATGAGTTCAACACTA
AAGACAATCCATGGGGGGAGCCCCCAGCTGCTGTGGTTGGAGACCGGGGA
AACATTTCCGCAGTGAGGTCTTATTTCGTGGATCTCTACCGAGAGAAGAG
GGTAGTTTCCCAGAGTCTCAAGGTTGTGCTCGTCGGAAGGGAAGACACAG
GAAAGACA
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